Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19360 and IAI47_19365 are separated by 162 nucleotides IAI47_19365 and IAI47_19370 are separated by 415 nucleotides
IAI47_19360: IAI47_19360 - HAMP domain-containing protein, at 96,746 to 98,050
_19360
IAI47_19365: IAI47_19365 - DUF1471 domain-containing protein, at 98,213 to 98,470
_19365
IAI47_19370: IAI47_19370 - MFS transporter, at 98,886 to 100,136
_19370
Position (kb) 98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 97.384 kb on + strand, within IAI47_19360 at 97.385 kb on - strand, within IAI47_19360 at 97.412 kb on + strand, within IAI47_19360 at 97.412 kb on + strand, within IAI47_19360 at 97.412 kb on + strand, within IAI47_19360 at 97.413 kb on - strand, within IAI47_19360 at 97.577 kb on + strand, within IAI47_19360 at 97.577 kb on + strand, within IAI47_19360 at 97.578 kb on - strand, within IAI47_19360 at 97.620 kb on + strand, within IAI47_19360 at 97.620 kb on + strand, within IAI47_19360 at 97.636 kb on + strand, within IAI47_19360 at 97.636 kb on + strand, within IAI47_19360 at 97.636 kb on + strand, within IAI47_19360 at 97.636 kb on + strand, within IAI47_19360 at 97.637 kb on - strand, within IAI47_19360 at 97.638 kb on + strand, within IAI47_19360 at 97.638 kb on + strand, within IAI47_19360 at 97.639 kb on - strand, within IAI47_19360 at 97.680 kb on + strand, within IAI47_19360 at 97.681 kb on - strand, within IAI47_19360 at 97.712 kb on - strand, within IAI47_19360 at 97.712 kb on - strand, within IAI47_19360 at 97.712 kb on - strand, within IAI47_19360 at 97.714 kb on + strand, within IAI47_19360 at 97.715 kb on - strand, within IAI47_19360 at 97.715 kb on - strand, within IAI47_19360 at 97.747 kb on + strand, within IAI47_19360 at 97.748 kb on - strand, within IAI47_19360 at 97.759 kb on + strand, within IAI47_19360 at 97.760 kb on - strand, within IAI47_19360 at 97.822 kb on + strand, within IAI47_19360 at 97.822 kb on + strand, within IAI47_19360 at 97.822 kb on + strand, within IAI47_19360 at 97.824 kb on + strand, within IAI47_19360 at 97.824 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.868 kb on + strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.869 kb on - strand, within IAI47_19360 at 97.941 kb on + strand at 97.971 kb on + strand at 98.055 kb on + strand at 98.055 kb on + strand at 98.067 kb on + strand at 98.067 kb on + strand at 98.067 kb on + strand at 98.068 kb on - strand at 98.068 kb on - strand at 98.116 kb on + strand at 98.116 kb on + strand at 98.116 kb on + strand at 98.116 kb on + strand at 98.127 kb on + strand at 98.142 kb on + strand at 98.142 kb on + strand at 98.142 kb on + strand at 98.142 kb on + strand at 98.143 kb on - strand at 98.143 kb on - strand at 98.143 kb on - strand at 98.169 kb on + strand at 98.212 kb on + strand at 98.212 kb on + strand at 98.212 kb on + strand at 98.212 kb on + strand at 98.212 kb on + strand at 98.213 kb on - strand at 98.213 kb on - strand at 98.213 kb on - strand at 98.213 kb on - strand at 98.213 kb on - strand at 98.244 kb on + strand, within IAI47_19365 at 98.244 kb on + strand, within IAI47_19365 at 98.245 kb on - strand, within IAI47_19365 at 98.245 kb on - strand, within IAI47_19365 at 98.305 kb on + strand, within IAI47_19365 at 98.305 kb on + strand, within IAI47_19365 at 98.305 kb on + strand, within IAI47_19365 at 98.305 kb on + strand, within IAI47_19365 at 98.305 kb on + strand, within IAI47_19365 at 98.305 kb on + strand, within IAI47_19365 at 98.306 kb on - strand, within IAI47_19365 at 98.306 kb on - strand, within IAI47_19365 at 98.306 kb on - strand, within IAI47_19365 at 98.361 kb on + strand, within IAI47_19365 at 98.408 kb on + strand, within IAI47_19365 at 98.409 kb on - strand, within IAI47_19365 at 98.409 kb on - strand, within IAI47_19365 at 98.413 kb on + strand, within IAI47_19365 at 98.414 kb on - strand, within IAI47_19365 at 98.434 kb on + strand, within IAI47_19365 at 98.459 kb on - strand at 98.463 kb on - strand at 98.468 kb on + strand at 98.469 kb on - strand at 98.524 kb on + strand at 98.525 kb on - strand at 98.540 kb on + strand at 98.540 kb on + strand at 98.540 kb on + strand at 98.541 kb on - strand at 98.541 kb on - strand at 98.541 kb on - strand at 98.580 kb on + strand at 98.619 kb on + strand at 98.627 kb on + strand at 98.690 kb on - strand at 98.690 kb on - strand at 98.703 kb on - strand at 98.703 kb on - strand at 98.703 kb on - strand at 98.758 kb on + strand at 98.758 kb on + strand at 98.760 kb on + strand at 98.760 kb on + strand at 98.761 kb on - strand at 98.773 kb on + strand at 98.819 kb on + strand at 98.826 kb on - strand at 98.826 kb on - strand at 98.826 kb on - strand at 98.829 kb on - strand at 98.829 kb on - strand at 98.836 kb on + strand at 98.837 kb on - strand at 98.854 kb on + strand at 98.854 kb on + strand at 98.854 kb on + strand at 98.854 kb on + strand at 98.854 kb on + strand at 98.854 kb on + strand at 98.854 kb on + strand at 98.855 kb on - strand at 98.858 kb on - strand at 98.858 kb on - strand at 98.874 kb on + strand at 98.880 kb on + strand at 98.880 kb on + strand at 98.929 kb on + strand at 98.981 kb on + strand at 98.982 kb on - strand at 98.992 kb on + strand at 98.992 kb on + strand at 98.992 kb on + strand at 98.992 kb on + strand at 98.993 kb on - strand at 98.993 kb on - strand at 98.993 kb on - strand at 98.999 kb on + strand at 98.999 kb on + strand at 99.000 kb on - strand at 99.000 kb on - strand at 99.004 kb on - strand at 99.004 kb on - strand at 99.004 kb on - strand at 99.053 kb on + strand, within IAI47_19370 at 99.053 kb on + strand, within IAI47_19370 at 99.053 kb on + strand, within IAI47_19370 at 99.053 kb on + strand, within IAI47_19370 at 99.054 kb on - strand, within IAI47_19370 at 99.054 kb on - strand, within IAI47_19370 at 99.054 kb on - strand, within IAI47_19370 at 99.054 kb on - strand, within IAI47_19370 at 99.054 kb on - strand, within IAI47_19370 at 99.120 kb on + strand, within IAI47_19370 at 99.120 kb on + strand, within IAI47_19370 at 99.121 kb on - strand, within IAI47_19370 at 99.121 kb on - strand, within IAI47_19370 at 99.121 kb on - strand, within IAI47_19370 at 99.197 kb on + strand, within IAI47_19370 at 99.197 kb on + strand, within IAI47_19370 at 99.197 kb on + strand, within IAI47_19370 at 99.197 kb on + strand, within IAI47_19370 at 99.197 kb on + strand, within IAI47_19370 at 99.198 kb on - strand, within IAI47_19370 at 99.198 kb on - strand, within IAI47_19370 at 99.198 kb on - strand, within IAI47_19370 at 99.198 kb on - strand, within IAI47_19370 at 99.198 kb on - strand, within IAI47_19370 at 99.233 kb on + strand, within IAI47_19370 at 99.233 kb on + strand, within IAI47_19370 at 99.233 kb on + strand, within IAI47_19370 at 99.233 kb on + strand, within IAI47_19370 at 99.233 kb on + strand, within IAI47_19370 at 99.234 kb on - strand, within IAI47_19370 at 99.234 kb on - strand, within IAI47_19370 at 99.234 kb on - strand, within IAI47_19370 at 99.234 kb on - strand at 99.234 kb on - strand, within IAI47_19370 at 99.234 kb on - strand, within IAI47_19370 at 99.351 kb on + strand, within IAI47_19370 at 99.354 kb on + strand, within IAI47_19370 at 99.354 kb on + strand, within IAI47_19370 at 99.354 kb on + strand, within IAI47_19370 at 99.354 kb on + strand, within IAI47_19370 at 99.354 kb on + strand, within IAI47_19370 at 99.355 kb on - strand, within IAI47_19370 at 99.355 kb on - strand, within IAI47_19370 at 99.355 kb on - strand, within IAI47_19370 at 99.355 kb on - strand, within IAI47_19370 at 99.355 kb on - strand, within IAI47_19370 at 99.355 kb on - strand, within IAI47_19370 at 99.359 kb on + strand, within IAI47_19370 at 99.359 kb on + strand, within IAI47_19370 at 99.359 kb on + strand, within IAI47_19370 at 99.359 kb on + strand, within IAI47_19370 at 99.360 kb on - strand, within IAI47_19370 at 99.433 kb on + strand, within IAI47_19370 at 99.434 kb on - strand, within IAI47_19370 at 99.446 kb on + strand, within IAI47_19370 at 99.446 kb on + strand, within IAI47_19370 at 99.446 kb on + strand, within IAI47_19370 at 99.446 kb on + strand, within IAI47_19370 at 99.446 kb on + strand, within IAI47_19370 at 99.446 kb on + strand, within IAI47_19370 at 99.447 kb on - strand, within IAI47_19370 at 99.447 kb on - strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.450 kb on + strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.451 kb on - strand, within IAI47_19370 at 99.452 kb on + strand, within IAI47_19370 at 99.452 kb on + strand, within IAI47_19370 at 99.453 kb on - strand, within IAI47_19370 at 99.453 kb on - strand, within IAI47_19370 at 99.468 kb on + strand, within IAI47_19370
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 97,384 + IAI47_19360 0.49 -0.2 97,385 - IAI47_19360 0.49 +0.9 97,412 + IAI47_19360 0.51 +0.0 97,412 + IAI47_19360 0.51 +0.3 97,412 + IAI47_19360 0.51 -1.6 97,413 - IAI47_19360 0.51 +0.1 97,577 + IAI47_19360 0.64 +0.7 97,577 + IAI47_19360 0.64 -0.3 97,578 - IAI47_19360 0.64 -0.3 97,620 + IAI47_19360 0.67 +0.0 97,620 + IAI47_19360 0.67 -2.3 97,636 + IAI47_19360 0.68 -0.1 97,636 + IAI47_19360 0.68 -0.8 97,636 + IAI47_19360 0.68 +0.7 97,636 + IAI47_19360 0.68 +0.2 97,637 - IAI47_19360 0.68 +0.5 97,638 + IAI47_19360 0.68 -0.3 97,638 + IAI47_19360 0.68 -0.4 97,639 - IAI47_19360 0.68 +0.0 97,680 + IAI47_19360 0.72 +0.7 97,681 - IAI47_19360 0.72 +0.4 97,712 - IAI47_19360 0.74 -0.2 97,712 - IAI47_19360 0.74 +1.2 97,712 - IAI47_19360 0.74 +0.3 97,714 + IAI47_19360 0.74 -0.5 97,715 - IAI47_19360 0.74 -0.6 97,715 - IAI47_19360 0.74 +0.7 97,747 + IAI47_19360 0.77 +0.7 97,748 - IAI47_19360 0.77 +0.1 97,759 + IAI47_19360 0.78 -0.8 97,760 - IAI47_19360 0.78 -1.0 97,822 + IAI47_19360 0.82 +1.5 97,822 + IAI47_19360 0.82 -0.3 97,822 + IAI47_19360 0.82 +0.7 97,824 + IAI47_19360 0.83 +0.2 97,824 + IAI47_19360 0.83 +0.3 97,868 + IAI47_19360 0.86 -0.9 97,868 + IAI47_19360 0.86 +1.2 97,868 + IAI47_19360 0.86 -0.1 97,868 + IAI47_19360 0.86 +1.7 97,868 + IAI47_19360 0.86 +1.3 97,868 + IAI47_19360 0.86 -0.5 97,868 + IAI47_19360 0.86 +0.3 97,868 + IAI47_19360 0.86 -0.1 97,869 - IAI47_19360 0.86 -0.5 97,869 - IAI47_19360 0.86 -0.7 97,869 - IAI47_19360 0.86 +1.0 97,869 - IAI47_19360 0.86 -0.8 97,869 - IAI47_19360 0.86 -0.1 97,869 - IAI47_19360 0.86 +0.6 97,869 - IAI47_19360 0.86 +0.5 97,869 - IAI47_19360 0.86 -1.4 97,869 - IAI47_19360 0.86 -1.0 97,869 - IAI47_19360 0.86 +0.0 97,869 - IAI47_19360 0.86 +0.7 97,869 - IAI47_19360 0.86 +0.7 97,941 + -0.9 97,971 + -1.6 98,055 + +2.0 98,055 + +0.6 98,067 + -0.3 98,067 + -0.0 98,067 + -0.2 98,068 - +0.5 98,068 - +0.3 98,116 + +1.6 98,116 + +0.1 98,116 + +0.7 98,116 + +0.7 98,127 + +0.1 98,142 + -1.4 98,142 + -1.2 98,142 + -0.3 98,142 + +0.1 98,143 - -0.7 98,143 - -0.8 98,143 - +0.7 98,169 + -1.3 98,212 + +0.7 98,212 + +1.3 98,212 + +1.5 98,212 + -0.1 98,212 + +0.1 98,213 - +0.3 98,213 - +1.1 98,213 - +0.4 98,213 - -1.1 98,213 - +0.7 98,244 + IAI47_19365 0.12 -0.6 98,244 + IAI47_19365 0.12 +1.1 98,245 - IAI47_19365 0.12 -1.1 98,245 - IAI47_19365 0.12 -0.4 98,305 + IAI47_19365 0.36 +0.2 98,305 + IAI47_19365 0.36 -0.5 98,305 + IAI47_19365 0.36 +0.0 98,305 + IAI47_19365 0.36 +1.4 98,305 + IAI47_19365 0.36 +0.8 98,305 + IAI47_19365 0.36 -2.1 98,306 - IAI47_19365 0.36 -0.1 98,306 - IAI47_19365 0.36 -0.3 98,306 - IAI47_19365 0.36 -1.6 98,361 + IAI47_19365 0.57 +0.3 98,408 + IAI47_19365 0.76 +1.3 98,409 - IAI47_19365 0.76 +0.5 98,409 - IAI47_19365 0.76 -1.3 98,413 + IAI47_19365 0.78 -0.2 98,414 - IAI47_19365 0.78 -0.7 98,434 + IAI47_19365 0.86 -0.8 98,459 - +0.4 98,463 - +0.3 98,468 + -1.8 98,469 - -1.1 98,524 + +0.0 98,525 - -0.5 98,540 + -0.4 98,540 + -1.8 98,540 + -0.3 98,541 - -0.8 98,541 - +0.2 98,541 - -0.4 98,580 + -1.6 98,619 + +0.7 98,627 + +0.3 98,690 - -0.3 98,690 - +0.4 98,703 - -0.4 98,703 - +0.0 98,703 - -0.4 98,758 + +0.5 98,758 + -0.8 98,760 + -0.3 98,760 + +0.2 98,761 - -1.8 98,773 + +1.3 98,819 + +0.4 98,826 - -0.4 98,826 - +1.7 98,826 - +0.7 98,829 - +0.2 98,829 - +0.1 98,836 + +0.7 98,837 - -0.7 98,854 + +0.9 98,854 + -1.2 98,854 + -0.4 98,854 + +0.7 98,854 + -1.0 98,854 + -1.7 98,854 + -1.1 98,855 - +0.3 98,858 - +0.2 98,858 - -0.5 98,874 + +0.7 98,880 + -0.8 98,880 + +0.1 98,929 + +0.0 98,981 + +0.3 98,982 - +0.4 98,992 + +0.0 98,992 + +0.7 98,992 + -0.8 98,992 + +2.2 98,993 - +0.2 98,993 - -0.2 98,993 - -1.0 98,999 + +2.0 98,999 + -0.7 99,000 - -0.6 99,000 - +0.7 99,004 - -0.3 99,004 - -0.7 99,004 - +1.2 99,053 + IAI47_19370 0.13 +1.0 99,053 + IAI47_19370 0.13 +0.3 99,053 + IAI47_19370 0.13 -0.2 99,053 + IAI47_19370 0.13 +1.4 99,054 - IAI47_19370 0.13 +0.9 99,054 - IAI47_19370 0.13 -0.7 99,054 - IAI47_19370 0.13 +0.7 99,054 - IAI47_19370 0.13 +0.7 99,054 - IAI47_19370 0.13 -0.7 99,120 + IAI47_19370 0.19 -0.5 99,120 + IAI47_19370 0.19 -0.5 99,121 - IAI47_19370 0.19 +1.3 99,121 - IAI47_19370 0.19 -0.3 99,121 - IAI47_19370 0.19 +0.7 99,197 + IAI47_19370 0.25 +0.3 99,197 + IAI47_19370 0.25 -0.4 99,197 + IAI47_19370 0.25 +0.0 99,197 + IAI47_19370 0.25 -0.4 99,197 + IAI47_19370 0.25 -2.4 99,198 - IAI47_19370 0.25 -1.6 99,198 - IAI47_19370 0.25 -0.3 99,198 - IAI47_19370 0.25 +0.3 99,198 - IAI47_19370 0.25 +0.6 99,198 - IAI47_19370 0.25 -0.6 99,233 + IAI47_19370 0.28 -0.5 99,233 + IAI47_19370 0.28 -0.7 99,233 + IAI47_19370 0.28 -2.3 99,233 + IAI47_19370 0.28 -1.4 99,233 + IAI47_19370 0.28 +2.1 99,234 - IAI47_19370 0.28 +1.4 99,234 - IAI47_19370 0.28 -0.0 99,234 - IAI47_19370 0.28 -1.3 99,234 - +0.2 99,234 - IAI47_19370 0.28 -0.1 99,234 - IAI47_19370 0.28 +1.0 99,351 + IAI47_19370 0.37 -0.2 99,354 + IAI47_19370 0.37 +0.3 99,354 + IAI47_19370 0.37 +0.7 99,354 + IAI47_19370 0.37 +0.7 99,354 + IAI47_19370 0.37 -0.5 99,354 + IAI47_19370 0.37 +0.4 99,355 - IAI47_19370 0.37 -0.2 99,355 - IAI47_19370 0.37 +0.2 99,355 - IAI47_19370 0.37 -0.6 99,355 - IAI47_19370 0.37 -1.1 99,355 - IAI47_19370 0.37 -1.4 99,355 - IAI47_19370 0.37 -0.1 99,359 + IAI47_19370 0.38 +0.6 99,359 + IAI47_19370 0.38 +0.7 99,359 + IAI47_19370 0.38 +0.1 99,359 + IAI47_19370 0.38 +0.3 99,360 - IAI47_19370 0.38 -1.3 99,433 + IAI47_19370 0.44 +0.7 99,434 - IAI47_19370 0.44 +0.7 99,446 + IAI47_19370 0.45 +0.2 99,446 + IAI47_19370 0.45 +0.9 99,446 + IAI47_19370 0.45 +0.5 99,446 + IAI47_19370 0.45 +1.7 99,446 + IAI47_19370 0.45 +0.6 99,446 + IAI47_19370 0.45 +1.2 99,447 - IAI47_19370 0.45 -0.4 99,447 - IAI47_19370 0.45 +0.9 99,450 + IAI47_19370 0.45 -0.3 99,450 + IAI47_19370 0.45 +0.3 99,450 + IAI47_19370 0.45 +0.3 99,450 + IAI47_19370 0.45 -0.3 99,450 + IAI47_19370 0.45 +0.1 99,450 + IAI47_19370 0.45 -0.5 99,450 + IAI47_19370 0.45 +1.4 99,450 + IAI47_19370 0.45 +0.4 99,450 + IAI47_19370 0.45 -0.5 99,451 - IAI47_19370 0.45 -0.3 99,451 - IAI47_19370 0.45 -0.4 99,451 - IAI47_19370 0.45 -0.6 99,451 - IAI47_19370 0.45 -2.1 99,451 - IAI47_19370 0.45 -0.3 99,451 - IAI47_19370 0.45 +0.7 99,451 - IAI47_19370 0.45 -0.1 99,451 - IAI47_19370 0.45 -0.4 99,451 - IAI47_19370 0.45 +2.7 99,451 - IAI47_19370 0.45 +0.5 99,451 - IAI47_19370 0.45 +1.7 99,452 + IAI47_19370 0.45 -0.5 99,452 + IAI47_19370 0.45 -0.6 99,453 - IAI47_19370 0.45 -0.3 99,453 - IAI47_19370 0.45 -0.6 99,468 + IAI47_19370 0.47 +0.7
Or see this region's nucleotide sequence