Strain Fitness in Pantoea sp. MT58 around IAI47_17820

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
3,784,893	+		IAI47_17815	0.74	-0.7
3,784,893	+		IAI47_17815	0.74	-0.0
3,784,894	-		IAI47_17815	0.74	-0.2
3,784,918	+		IAI47_17815	0.75	+0.7
3,784,918	+		IAI47_17815	0.75	-0.2
3,784,918	+		IAI47_17815	0.75	-0.7
3,784,918	+		IAI47_17815	0.75	-0.4
3,784,918	+		IAI47_17815	0.75	-0.5
3,784,919	-		IAI47_17815	0.75	-0.9
3,784,919	-		IAI47_17815	0.75	-1.0
3,784,919	-		IAI47_17815	0.75	-0.9
3,784,919	-		IAI47_17815	0.75	-0.6
3,784,919	-		IAI47_17815	0.75	-1.6
3,784,919	-		IAI47_17815	0.75	+1.3
3,784,919	-		IAI47_17815	0.75	+0.0
3,784,919	-		IAI47_17815	0.75	+0.3
3,784,920	+		IAI47_17815	0.75	-0.7
3,784,984	+		IAI47_17815	0.77	-1.7
3,784,984	+		IAI47_17815	0.77	+1.1
3,784,985	-		IAI47_17815	0.77	+0.1
3,784,985	-		IAI47_17815	0.77	-0.2
3,784,985	-		IAI47_17815	0.77	-0.3
3,784,986	+		IAI47_17815	0.77	-0.2
3,784,987	-		IAI47_17815	0.77	-1.4
3,784,987	-		IAI47_17815	0.77	-0.9
3,784,987	-		IAI47_17815	0.77	+0.1
3,784,987	-		IAI47_17815	0.77	-2.5
3,785,007	+		IAI47_17815	0.78	-0.7
3,785,008	-		IAI47_17815	0.78	+0.5
3,785,086	+		IAI47_17815	0.80	+0.3
3,785,086	+		IAI47_17815	0.80	+0.2
3,785,086	+		IAI47_17815	0.80	-0.7
3,785,086	+		IAI47_17815	0.80	-0.2
3,785,086	+		IAI47_17815	0.80	-0.6
3,785,086	+		IAI47_17815	0.80	+0.3
3,785,086	+		IAI47_17815	0.80	-0.9
3,785,086	+		IAI47_17815	0.80	-0.8
3,785,086	+		IAI47_17815	0.80	+1.3
3,785,086	+		IAI47_17815	0.80	-0.2
3,785,087	-		IAI47_17815	0.81	+1.4
3,785,087	-		IAI47_17815	0.81	-1.2
3,785,087	-		IAI47_17815	0.81	+0.5
3,785,087	-		IAI47_17815	0.81	-0.3
3,785,087	-		IAI47_17815	0.81	+2.1
3,785,087	-		IAI47_17815	0.81	+0.2
3,785,087	-		IAI47_17815	0.81	-0.0
3,785,087	-		IAI47_17815	0.81	+1.8
3,785,087	-		IAI47_17815	0.81	+0.8
3,785,119	+		IAI47_17815	0.82	-1.1
3,785,119	+		IAI47_17815	0.82	+0.3
3,785,119	+		IAI47_17815	0.82	-0.2
3,785,119	+		IAI47_17815	0.82	+0.3
3,785,119	+		IAI47_17815	0.82	-0.4
3,785,120	-		IAI47_17815	0.82	-0.5
3,785,120	-		IAI47_17815	0.82	-0.2
3,785,120	-		IAI47_17815	0.82	-0.7
3,785,120	-		IAI47_17815	0.82	-0.5
3,785,121	+		IAI47_17815	0.82	+0.2
3,785,122	-		IAI47_17815	0.82	+2.4
3,785,122	-		IAI47_17815	0.82	-0.2
3,785,147	-		IAI47_17815	0.83	-1.0
3,785,147	-		IAI47_17815	0.83	+0.2
3,785,147	-		IAI47_17815	0.83	+0.8
3,785,184	+		IAI47_17815	0.84	+0.7
3,785,232	+		IAI47_17815	0.86	-0.4
3,785,233	-		IAI47_17815	0.86	+0.4
3,785,233	-		IAI47_17815	0.86	-0.2
3,785,262	+		IAI47_17815	0.87	-1.7
3,785,262	+		IAI47_17815	0.87	-0.9
3,785,262	+		IAI47_17815	0.87	+0.1
3,785,262	+		IAI47_17815	0.87	-1.1
3,785,262	+		IAI47_17815	0.87	-0.2
3,785,263	-		IAI47_17815	0.87	-2.6
3,785,263	-		IAI47_17815	0.87	-0.7
3,785,263	-		IAI47_17815	0.87	+2.2
3,785,263	-		IAI47_17815	0.87	-0.2
3,785,263	-		IAI47_17815	0.87	+0.4
3,785,263	-		IAI47_17815	0.87	-2.6
3,785,263	-		IAI47_17815	0.87	+0.5
3,785,263	-		IAI47_17815	0.87	+0.7
3,785,266	+		IAI47_17815	0.87	-0.2
3,785,266	+		IAI47_17815	0.87	+1.6
3,785,266	+		IAI47_17815	0.87	+0.4
3,785,266	+		IAI47_17815	0.87	+0.5
3,785,266	+		IAI47_17815	0.87	+0.3
3,785,266	+		IAI47_17815	0.87	+0.5
3,785,266	+		IAI47_17815	0.87	-0.7
3,785,266	+		IAI47_17815	0.87	-0.2
3,785,266	+		IAI47_17815	0.87	+1.2
3,785,266	+		IAI47_17815	0.87	-0.7
3,785,266	+		IAI47_17815	0.87	+0.5
3,785,267	-		IAI47_17815	0.87	-1.3
3,785,267	-		IAI47_17815	0.87	+1.0
3,785,267	-		IAI47_17815	0.87	+0.1
3,785,267	-		IAI47_17815	0.87	-0.2
3,785,267	-		IAI47_17815	0.87	+0.8
3,785,267	-		IAI47_17815	0.87	-0.4
3,785,267	-		IAI47_17815	0.87	-0.7
3,785,267	-		IAI47_17815	0.87	-0.9
3,785,267	-		IAI47_17815	0.87	+0.4
3,785,267	-		IAI47_17815	0.87	+0.8
3,785,267	-		IAI47_17815	0.87	-0.7
3,785,268	+		IAI47_17815	0.87	-0.2
3,785,268	+		IAI47_17815	0.87	+1.2
3,785,269	-		IAI47_17815	0.87	-0.6
3,785,292	+		IAI47_17815	0.88	+0.0
3,785,293	-		IAI47_17815	0.88	-1.2
3,785,368	+				+0.8
3,785,368	+				-0.4
3,785,368	+				-0.6
3,785,368	+				+1.3
3,785,368	+				-1.3
3,785,368	+				+1.4
3,785,368	+				-0.7
3,785,368	+				-1.5
3,785,368	+				-0.2
3,785,368	+				-1.2
3,785,369	-				-1.4
3,785,369	-				-0.2
3,785,369	-				-1.5
3,785,369	-				+0.0
3,785,369	-				+0.0
3,785,369	-				-0.2
3,785,369	-				-3.2
3,785,369	-				-0.2
3,785,369	-				+0.7
3,785,369	-				+0.8
3,785,369	-				-0.3
3,785,369	-				+0.2
3,785,370	+				-0.2
3,785,370	+				-0.6
3,785,371	-				-0.3
3,785,371	-				-0.4
3,785,601	+				-0.6
3,785,601	+				-0.6
3,785,627	+				+0.4
3,785,628	-				+1.1
3,785,635	+				+1.0
3,785,635	+				+0.4
3,785,635	+				-0.2
3,785,635	+				-1.2
3,785,635	+				-0.4
3,785,636	-				-0.0
3,785,636	-				-2.9
3,785,636	-				-0.7
3,785,725	+				-0.7
3,785,725	+				+1.0
3,785,725	+				-0.5
3,785,725	+				-0.2
3,785,725	+				-0.0
3,785,725	+				+1.4
3,785,725	+				+0.7
3,785,725	+				+0.8
3,785,725	+				+0.8
3,785,725	+				-0.6
3,785,725	+				-2.6
3,785,725	+				-0.7
3,785,725	+				+0.4
3,785,725	+				-0.6
3,785,725	+				+0.1
3,785,725	+				-1.6
3,785,725	+				+0.3
3,785,725	+				-1.2
3,785,725	+				+0.1
3,785,725	+				+1.5
3,785,725	+				+0.8
3,785,725	+				-0.6
3,785,725	+				+1.2
3,785,725	+				-0.4
3,785,725	+				+0.4
3,785,725	+				+0.6
3,785,725	+				+1.6
3,785,726	-				+1.7
3,785,726	-				-0.2
3,785,726	-				+0.8
3,785,726	-				+0.8
3,785,726	-				+0.8
3,785,726	-				+0.0
3,785,726	-				+0.0
3,785,726	-				-1.0
3,785,726	-				-0.6
3,785,726	-				+0.7
3,785,726	-				+0.4
3,785,726	-				+0.1
3,785,726	-				-0.0
3,785,726	-				+0.2
3,785,726	-				+0.6
3,785,726	-				-0.3
3,785,726	-				+0.3
3,785,726	-				-0.4
3,785,726	-				-1.2
3,785,726	-				-0.0
3,785,726	-				+0.2
3,785,726	-				+0.2
3,785,726	-				-0.5
3,785,726	-				-0.7
3,785,726	-				-0.7
3,785,726	-				-2.6
3,785,726	-				-0.6
3,785,726	-				+1.3
3,785,726	-				+0.5
3,785,726	-				+0.8
3,785,726	-				+1.1
3,785,726	-				-3.1
3,785,726	-				-1.7
3,785,726	-				-0.6
3,785,726	-				-1.0
3,785,726	-				+0.6
3,785,726	-				-1.6
3,785,726	-				+1.3
3,785,727	+				+0.8
3,785,727	+				+0.0
3,785,727	+				-0.3
3,785,727	+				-2.7
3,785,727	+				-0.2
3,785,727	+				-0.8
3,785,727	+				+0.3
3,785,727	+				-0.6
3,785,728	-				-0.0
3,785,728	-				-0.4
3,785,733	+				-0.0
3,785,733	+				+0.8
3,785,733	+				-0.2
3,785,733	+				-0.6
3,785,734	-				-0.7
3,785,734	-				+0.8
3,785,734	-				+0.3
3,785,734	-				-0.8
3,785,735	+				-1.2
3,785,735	+				-0.4
3,785,735	+				-1.3
3,785,735	+				+0.3
3,785,735	+				+1.2
3,785,735	+				+0.1
3,785,735	+				-1.0
3,785,736	+				-1.1
3,785,736	-				+0.1
3,785,736	-				+0.8
3,785,736	-				-0.2
3,785,736	-				+0.3
3,785,756	+				+0.6
3,785,757	-				-0.3
3,785,757	-				-0.4
3,785,762	+				+0.3
3,785,762	+				+1.8
3,785,762	+				-0.2
3,785,763	-				-0.1
3,785,763	-				-0.3
3,785,763	-				-1.1
3,785,816	-				-0.6
3,785,816	-				-1.2
3,785,838	+				-1.0
3,785,839	-				-0.2
3,785,839	-				-2.9
3,785,876	+				-1.0
3,785,876	+				+0.4
3,785,876	+				-1.6
3,785,876	+				-1.3
3,785,877	-				+0.8
3,785,877	-				-1.0
3,785,877	-				+0.8
3,785,877	-				+0.6
3,785,877	-				+0.6
3,785,879	+				-0.3
3,785,879	+				+0.4
3,785,879	+				-1.0
3,785,880	-				-2.2
3,785,882	-				+0.8
3,785,889	+				-0.7
3,785,889	+				-0.2
3,785,889	+				+0.5
3,785,889	+				-1.5
3,785,889	+				+0.8
3,785,889	+				+2.0
3,785,889	+				-1.3
3,785,889	+				-1.9
3,785,889	+				+1.1
3,785,889	+				+1.3
3,785,890	-				+0.8
3,785,890	-				-0.1
3,785,890	-				+1.3
3,785,890	-				+0.4
3,785,890	-				-1.2
3,785,890	-				-2.2
3,785,890	-				-0.0
3,785,890	-				-0.6
3,785,933	+				+2.5
3,786,017	+		IAI47_17820	0.14	+0.8
3,786,105	+		IAI47_17820	0.22	+0.8
3,786,105	+		IAI47_17820	0.22	-0.3
3,786,106	-		IAI47_17820	0.22	+0.7
3,786,137	+		IAI47_17820	0.25	+0.1
3,786,137	+		IAI47_17820	0.25	+1.2
3,786,138	-		IAI47_17820	0.25	-0.2
3,786,138	-		IAI47_17820	0.25	-1.7
3,786,138	-		IAI47_17820	0.25	-1.6
3,786,138	-		IAI47_17820	0.25	+0.8
3,786,138	-		IAI47_17820	0.25	-0.3
3,786,138	-		IAI47_17820	0.25	+0.6
3,786,189	+		IAI47_17820	0.30	-0.7
3,786,190	-		IAI47_17820	0.30	+1.1
3,786,216	+		IAI47_17820	0.32	+0.8
3,786,216	+		IAI47_17820	0.32	-0.0
3,786,216	+		IAI47_17820	0.32	+0.8
3,786,216	+		IAI47_17820	0.32	-0.2
3,786,216	+		IAI47_17820	0.32	-1.2
3,786,216	+		IAI47_17820	0.32	+0.3
3,786,216	+		IAI47_17820	0.32	+0.8
3,786,216	+		IAI47_17820	0.32	+1.4
3,786,216	+		IAI47_17820	0.32	+0.0
3,786,217	-		IAI47_17820	0.32	-0.5
3,786,217	-		IAI47_17820	0.32	+0.8
3,786,217	-		IAI47_17820	0.32	+1.0
3,786,217	-		IAI47_17820	0.32	-3.2
3,786,217	-		IAI47_17820	0.32	+1.3
3,786,217	-		IAI47_17820	0.32	-1.0
3,786,217	-		IAI47_17820	0.32	+1.8
3,786,217	-		IAI47_17820	0.32	-0.2
3,786,248	+		IAI47_17820	0.35	+0.0
3,786,248	+		IAI47_17820	0.35	-0.7
3,786,249	-		IAI47_17820	0.35	+0.2
3,786,252	+		IAI47_17820	0.36	+0.4
3,786,253	-		IAI47_17820	0.36	-0.7
3,786,363	+		IAI47_17820	0.46	-0.5
3,786,363	+		IAI47_17820	0.46	-1.2
3,786,363	+		IAI47_17820	0.46	-1.7
3,786,364	-		IAI47_17820	0.46	-0.8
3,786,364	-		IAI47_17820	0.46	+3.8
3,786,364	-		IAI47_17820	0.46	-0.1
3,786,364	-		IAI47_17820	0.46	-0.6
3,786,411	-		IAI47_17820	0.51	-1.7
3,786,437	+		IAI47_17820	0.53	-0.1
3,786,437	+		IAI47_17820	0.53	+0.4
3,786,437	+		IAI47_17820	0.53	+1.4
3,786,437	+		IAI47_17820	0.53	+1.3
3,786,438	-		IAI47_17820	0.53	-0.5
3,786,438	-		IAI47_17820	0.53	+0.4
3,786,438	-		IAI47_17820	0.53	+0.3
3,786,548	+		IAI47_17820	0.64	+1.5
3,786,714	-		IAI47_17820	0.79	-0.2
3,786,714	-		IAI47_17820	0.79	+0.8
3,786,809	+		IAI47_17820	0.88	-0.2
3,786,809	+		IAI47_17820	0.88	+0.2
3,786,809	+		IAI47_17820	0.88	-1.2
3,786,809	+		IAI47_17820	0.88	+0.2
3,786,809	+		IAI47_17820	0.88	-0.4
3,786,809	+		IAI47_17820	0.88	-0.3
3,786,810	-		IAI47_17820	0.88	+0.4
3,786,810	-		IAI47_17820	0.88	-0.5
3,786,810	-		IAI47_17820	0.88	+0.5
3,786,810	-		IAI47_17820	0.88	+0.3
3,786,810	-		IAI47_17820	0.88	-0.0
3,786,810	-		IAI47_17820	0.88	+0.8
3,786,810	-		IAI47_17820	0.88	+0.8
3,786,856	-				+0.8
3,786,856	-				-0.5
3,786,856	-				+0.5
3,786,856	-				-0.3
3,786,856	-				-1.1
3,786,856	-				-0.4
3,786,896	+				-0.9
3,786,908	+				+0.8
3,786,908	+				-0.7
3,786,909	-				-0.4
3,786,909	-				-0.7
3,786,981	-				+0.3
3,786,981	-				+1.4
3,787,032	+		IAI47_17825	0.13	-2.6
3,787,032	+		IAI47_17825	0.13	+0.8
3,787,032	+		IAI47_17825	0.13	-0.2
3,787,032	+		IAI47_17825	0.13	+0.7
3,787,033	-		IAI47_17825	0.14	-1.0
3,787,033	-		IAI47_17825	0.14	+0.7
3,787,035	+		IAI47_17825	0.14	-1.2
3,787,035	+		IAI47_17825	0.14	-0.2
3,787,035	+		IAI47_17825	0.14	+0.1
3,787,035	+		IAI47_17825	0.14	+0.7
3,787,036	-		IAI47_17825	0.15	+0.4
3,787,036	-		IAI47_17825	0.15	-2.0
3,787,036	-		IAI47_17825	0.15	+0.5
3,787,036	-		IAI47_17825	0.15	+0.7
3,787,036	-		IAI47_17825	0.15	+0.4
3,787,036	-		IAI47_17825	0.15	-1.3
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