Strain Fitness in Pantoea sp. MT58 around IAI47_15770

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
3,323,807	+		IAI47_15760	0.53	-0.0
3,323,807	+		IAI47_15760	0.53	+2.1
3,323,808	-		IAI47_15760	0.53	-1.5
3,323,844	+		IAI47_15760	0.58	+0.4
3,323,844	+		IAI47_15760	0.58	-0.5
3,323,844	+		IAI47_15760	0.58	+0.8
3,323,844	+		IAI47_15760	0.58	-0.3
3,323,845	-		IAI47_15760	0.59	+0.2
3,323,845	-		IAI47_15760	0.59	-0.9
3,323,845	-		IAI47_15760	0.59	+1.8
3,323,915	+		IAI47_15760	0.69	-1.0
3,323,916	-		IAI47_15760	0.69	-0.8
3,323,924	+		IAI47_15760	0.70	-1.2
3,323,925	-		IAI47_15760	0.71	+0.8
3,323,925	-		IAI47_15760	0.71	+0.8
3,323,925	-		IAI47_15760	0.71	+1.1
3,323,959	+		IAI47_15760	0.76	-1.2
3,323,959	+		IAI47_15760	0.76	-0.2
3,323,959	+		IAI47_15760	0.76	-1.5
3,323,959	+		IAI47_15760	0.76	+0.5
3,323,960	-		IAI47_15760	0.76	+0.1
3,323,960	-		IAI47_15760	0.76	+1.0
3,323,960	-		IAI47_15760	0.76	+0.8
3,323,960	-		IAI47_15760	0.76	-0.8
3,324,004	+		IAI47_15760	0.82	-0.8
3,324,012	+		IAI47_15760	0.83	+0.4
3,324,012	+		IAI47_15760	0.83	-0.2
3,324,012	+		IAI47_15760	0.83	-0.1
3,324,012	+		IAI47_15760	0.83	-0.7
3,324,012	+		IAI47_15760	0.83	+0.6
3,324,012	+		IAI47_15760	0.83	+0.8
3,324,013	-		IAI47_15760	0.84	+0.1
3,324,013	-		IAI47_15760	0.84	+0.2
3,324,013	-		IAI47_15760	0.84	+0.5
3,324,014	+		IAI47_15760	0.84	+2.4
3,324,014	+		IAI47_15760	0.84	-1.9
3,324,014	+		IAI47_15760	0.84	-0.6
3,324,014	+		IAI47_15760	0.84	-0.2
3,324,014	+		IAI47_15760	0.84	-0.5
3,324,015	-		IAI47_15760	0.84	-0.4
3,324,015	-		IAI47_15760	0.84	+0.8
3,324,015	-		IAI47_15760	0.84	-0.3
3,324,015	-		IAI47_15760	0.84	+0.5
3,324,015	-		IAI47_15760	0.84	+0.8
3,324,015	-		IAI47_15760	0.84	-0.0
3,324,157	+				-0.2
3,324,157	+				+1.0
3,324,158	-				+0.7
3,324,158	-				-0.8
3,324,165	+				-1.5
3,324,178	-				+0.0
3,324,186	-				+0.4
3,324,186	-				-0.2
3,324,190	+				+2.4
3,324,191	-				+0.2
3,324,191	-				+0.1
3,324,271	+		IAI47_15765	0.26	-0.4
3,324,272	-		IAI47_15765	0.27	-0.2
3,324,274	+		IAI47_15765	0.27	+0.1
3,324,274	+		IAI47_15765	0.27	+0.3
3,324,274	+		IAI47_15765	0.27	+0.4
3,324,275	-		IAI47_15765	0.28	-0.0
3,324,275	-		IAI47_15765	0.28	+1.4
3,324,275	-		IAI47_15765	0.28	-0.4
3,324,275	-		IAI47_15765	0.28	-0.4
3,324,275	-		IAI47_15765	0.28	-0.2
3,324,275	-		IAI47_15765	0.28	+0.8
3,324,275	-		IAI47_15765	0.28	+0.1
3,324,333	+		IAI47_15765	0.43	-1.5
3,324,333	+		IAI47_15765	0.43	+1.8
3,324,334	-		IAI47_15765	0.43	+0.1
3,324,334	-		IAI47_15765	0.43	-1.8
3,324,361	+		IAI47_15765	0.50	-0.2
3,324,500	+		IAI47_15765	0.87	+2.8
3,324,500	+		IAI47_15765	0.87	+0.0
3,324,501	-		IAI47_15765	0.87	+0.9
3,324,501	-		IAI47_15765	0.87	+0.3
3,324,501	-		IAI47_15765	0.87	-0.3
3,324,501	-		IAI47_15765	0.87	+0.6
3,324,501	-		IAI47_15765	0.87	+0.1
3,324,509	+		IAI47_15765	0.89	-0.1
3,324,509	+		IAI47_15765	0.89	-0.8
3,324,510	-		IAI47_15765	0.90	+0.4
3,324,510	-		IAI47_15765	0.90	+0.6
3,324,541	+				-2.6
3,324,541	+				+0.3
3,324,541	+				-1.0
3,324,542	-				+1.7
3,324,542	-				-0.3
3,324,545	-				+0.4
3,324,563	-				+0.5
3,324,579	+				-0.4
3,324,579	+				+0.5
3,324,579	+				-0.9
3,324,579	+				+0.4
3,324,580	-				+0.8
3,324,629	+				-0.2
3,324,629	+				-0.8
3,324,629	+				+0.1
3,324,629	+				+0.8
3,324,630	-				-0.2
3,324,630	-				+2.0
3,324,632	+				-0.2
3,324,633	-				+0.8
3,324,633	-				+0.1
3,324,721	+				+0.6
3,324,781	+				-1.5
3,324,781	+				+1.1
3,324,781	+				-0.2
3,324,782	-				-0.8
3,324,808	+				-1.0
3,324,814	+				-0.5
3,326,128	+				-0.8
3,327,357	-				-0.2
3,327,357	-				-1.0
3,327,357	-				+0.5
3,327,357	-				+0.6
3,327,357	-				-0.2
3,327,361	-				-1.3
3,327,388	-				+0.3
3,327,388	-				-0.8
3,327,388	-				-1.2
3,327,388	-				+1.0
3,327,388	-				-1.2
3,327,471	+				-0.4
3,327,496	-				+1.1
3,327,503	+				-0.0
3,327,522	+				+1.1
3,327,522	+				-1.8
3,327,522	+				+0.3
3,327,523	-				+0.1
3,327,523	-				+1.2
3,327,523	-				-0.6
3,327,523	-				-0.8
3,327,523	-				-0.7
3,327,523	-				+0.2
3,327,574	-				-0.8
3,327,574	-				-0.5
3,327,579	-				-0.1
3,327,602	+				+0.6
3,327,602	+				+0.5
3,327,602	+				-0.1
3,327,603	-				-0.1
3,327,646	+				+0.1
3,327,646	+				+0.2
3,327,646	+				+0.0
3,327,646	+				+1.3
3,327,647	-				+1.0
3,327,647	-				+0.8
3,327,663	+				-1.5
3,327,663	+				-1.8
3,327,663	+				-0.8
3,327,664	-				+1.6
3,327,664	-				+1.1
3,327,664	-				-0.5
3,327,686	+				+0.3
3,327,687	-				-0.1
3,327,687	-				+0.6
3,327,758	-				+0.0
3,327,758	-				-2.0
3,327,758	-				+0.1
3,327,758	-				+1.1
3,327,764	+				+0.0
3,327,764	+				+1.4
3,327,764	+				-0.0
3,327,765	-				-0.5
3,327,786	+				-0.2
3,327,786	+				+0.8
3,327,786	+				+0.7
3,327,786	+				-1.0
3,327,787	-				+0.2
3,327,787	-				+0.5
3,327,787	-				+0.4
3,327,857	+				-0.6
3,327,857	+				+0.4
3,327,857	+				+0.8
3,327,857	+				+0.2
3,327,858	-				-0.0
3,327,858	-				-0.5
3,327,858	-				-0.5
3,327,858	-				+1.7
3,327,893	-				-1.1
3,327,941	+				+0.4
3,327,941	+				-1.3
3,327,941	+				+1.4
3,327,941	+				+1.1
3,327,942	-				+0.3
3,327,995	+		IAI47_15775	0.13	+0.7
3,327,995	+		IAI47_15775	0.13	-0.5
3,328,043	+		IAI47_15775	0.23	-0.2
3,328,058	-		IAI47_15775	0.26	-0.8
3,328,238	+		IAI47_15775	0.61	+0.2
3,328,238	+		IAI47_15775	0.61	+0.8
3,328,238	+		IAI47_15775	0.61	-0.1
3,328,238	+		IAI47_15775	0.61	+0.7
3,328,238	+		IAI47_15775	0.61	+1.1
3,328,238	+		IAI47_15775	0.61	-0.2
3,328,238	+		IAI47_15775	0.61	+0.1
3,328,238	+		IAI47_15775	0.61	-0.2
3,328,238	+		IAI47_15775	0.61	-0.9
3,328,239	-		IAI47_15775	0.61	-0.8
3,328,239	-		IAI47_15775	0.61	-0.7
3,328,239	-		IAI47_15775	0.61	-1.0
3,328,239	-		IAI47_15775	0.61	+0.4
3,328,239	-		IAI47_15775	0.61	-0.1
3,328,239	-		IAI47_15775	0.61	-0.8
3,328,240	+		IAI47_15775	0.61	-0.3
3,328,240	+		IAI47_15775	0.61	+0.7
3,328,241	-		IAI47_15775	0.62	+0.8
3,328,241	-		IAI47_15775	0.62	-0.2
3,328,241	-		IAI47_15775	0.62	+0.6
3,328,267	+		IAI47_15775	0.67	+0.8
3,328,267	+		IAI47_15775	0.67	+0.5
3,328,267	+		IAI47_15775	0.67	+1.4
3,328,267	+		IAI47_15775	0.67	+0.6
3,328,267	+		IAI47_15775	0.67	-0.5
3,328,267	+		IAI47_15775	0.67	-0.3
3,328,267	+		IAI47_15775	0.67	-0.1
3,328,267	+		IAI47_15775	0.67	-0.9
3,328,267	+		IAI47_15775	0.67	+0.0
3,328,267	+		IAI47_15775	0.67	-0.9
3,328,267	+		IAI47_15775	0.67	-0.3
3,328,267	+		IAI47_15775	0.67	+0.3
3,328,268	-		IAI47_15775	0.67	+0.8
3,328,268	-		IAI47_15775	0.67	-1.8
3,328,268	-		IAI47_15775	0.67	-2.2
3,328,268	-		IAI47_15775	0.67	-1.5
3,328,268	-		IAI47_15775	0.67	-0.2
3,328,316	+		IAI47_15775	0.76	-1.1
3,328,316	+		IAI47_15775	0.76	-0.0
3,328,316	+		IAI47_15775	0.76	+1.0
3,328,317	-		IAI47_15775	0.76	+0.9