Strain Fitness in Pantoea sp. MT58 around IAI47_15740

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
3,317,708	-		IAI47_15735	0.36	-0.3
3,317,708	-		IAI47_15735	0.36	-0.3
3,317,708	-		IAI47_15735	0.36	+0.4
3,317,855	+		IAI47_15735	0.48	-0.9
3,317,856	-		IAI47_15735	0.48	-0.3
3,317,908	+		IAI47_15735	0.52	+0.5
3,317,945	+		IAI47_15735	0.55	+0.8
3,317,945	+		IAI47_15735	0.55	-1.2
3,317,946	-		IAI47_15735	0.55	+0.6
3,317,946	-		IAI47_15735	0.55	+1.1
3,317,946	-		IAI47_15735	0.55	-0.7
3,317,946	-		IAI47_15735	0.55	-1.4
3,317,946	-		IAI47_15735	0.55	-0.6
3,317,946	-		IAI47_15735	0.55	+0.7
3,317,946	-		IAI47_15735	0.55	+1.2
3,317,946	-		IAI47_15735	0.55	+3.4
3,317,946	-		IAI47_15735	0.55	-0.1
3,317,946	-		IAI47_15735	0.55	-0.3
3,317,946	-		IAI47_15735	0.55	-0.6
3,318,288	+		IAI47_15735	0.82	+1.3
3,318,289	-		IAI47_15735	0.82	-0.3
3,318,296	+		IAI47_15735	0.83	+0.3
3,318,296	+		IAI47_15735	0.83	+1.2
3,318,296	+		IAI47_15735	0.83	+0.5
3,318,296	+		IAI47_15735	0.83	-0.5
3,318,297	-		IAI47_15735	0.83	-1.8
3,318,352	+		IAI47_15735	0.87	+1.0
3,318,352	+		IAI47_15735	0.87	+0.4
3,318,359	+		IAI47_15735	0.87	-0.2
3,318,360	-		IAI47_15735	0.88	-1.5
3,318,416	+				+0.6
3,318,416	+				-0.5
3,318,416	+				+0.3
3,318,416	+				+0.8
3,318,416	+				+0.3
3,318,416	+				+0.5
3,318,416	+				-0.5
3,318,416	+				-1.6
3,318,416	+				-0.6
3,318,416	+				+1.1
3,318,416	+				+0.4
3,318,416	+				+1.0
3,318,417	-				+0.0
3,318,417	-				-0.1
3,318,417	-				-0.5
3,318,417	-				+2.1
3,318,417	-				-1.2
3,318,417	-				+1.0
3,318,445	+				+0.0
3,318,446	-				+0.6
3,318,446	-				-0.2
3,318,446	-				+0.7
3,318,446	-				-0.3
3,318,446	-				-0.3
3,318,457	+				-0.8
3,318,457	+				-2.2
3,318,457	+				-1.1
3,318,458	-				+0.7
3,318,503	+				-0.2
3,318,600	+				-1.0
3,318,608	+				+0.6
3,318,608	+				+0.8
3,318,609	-				+0.6
3,318,609	-				-0.7
3,318,609	-				-0.4
3,318,609	-				+0.6
3,318,609	-				-0.4
3,318,609	-				+0.1
3,318,615	+				-0.8
3,318,617	+				+0.4
3,318,618	-				-0.9
3,318,618	-				-0.5
3,318,618	-				+1.0
3,318,618	-				-0.2
3,318,618	-				+0.4
3,318,623	+				-0.2
3,318,710	+				+4.3
3,318,713	+				+0.9
3,318,713	+				-0.6
3,318,713	+				-1.4
3,318,713	+				+0.4
3,318,713	+				+0.3
3,318,714	-				-2.0
3,318,714	-				-0.5
3,318,736	-				+0.1
3,318,746	-				-0.2
3,318,759	+				+0.4
3,318,759	+				-1.9
3,318,760	-				-0.4
3,318,760	-				+0.1
3,318,775	+				+0.8
3,318,776	-				-0.8
3,318,787	+				-0.6
3,318,866	+		IAI47_15740	0.14	+0.3
3,318,924	-		IAI47_15740	0.19	-0.0
3,318,925	+		IAI47_15740	0.19	+0.4
3,318,926	-		IAI47_15740	0.19	+0.5
3,318,926	-		IAI47_15740	0.19	-1.6
3,318,926	-		IAI47_15740	0.19	+0.2
3,318,926	-		IAI47_15740	0.19	+0.4
3,319,172	+		IAI47_15740	0.41	+0.0
3,319,173	-		IAI47_15740	0.41	-0.8
3,319,173	-		IAI47_15740	0.41	+0.2
3,319,173	-		IAI47_15740	0.41	-0.2
3,319,173	-		IAI47_15740	0.41	-0.2
3,319,326	+		IAI47_15740	0.54	-0.4
3,319,326	+		IAI47_15740	0.54	+1.5
3,319,326	+		IAI47_15740	0.54	-0.9
3,319,326	+		IAI47_15740	0.54	+1.1
3,319,326	+		IAI47_15740	0.54	+0.4
3,319,326	+		IAI47_15740	0.54	+0.4
3,319,327	-		IAI47_15740	0.54	-0.2
3,319,327	-		IAI47_15740	0.54	-0.4
3,319,327	-		IAI47_15740	0.54	-0.6
3,319,327	-		IAI47_15740	0.54	-0.4
3,319,327	-		IAI47_15740	0.54	+1.1
3,319,327	-		IAI47_15740	0.54	-0.2
3,319,327	-		IAI47_15740	0.54	-0.2
3,319,425	+		IAI47_15740	0.63	+0.5
3,319,425	+		IAI47_15740	0.63	-0.7
3,319,425	+		IAI47_15740	0.63	-0.8
3,319,425	+		IAI47_15740	0.63	+0.7
3,319,425	+		IAI47_15740	0.63	+0.6
3,319,425	+		IAI47_15740	0.63	+0.2
3,319,426	-		IAI47_15740	0.63	-0.1
3,319,426	-		IAI47_15740	0.63	+0.2
3,319,426	-		IAI47_15740	0.63	+0.1
3,319,426	-		IAI47_15740	0.63	+1.3
3,319,426	-		IAI47_15740	0.63	-0.6
3,319,426	-		IAI47_15740	0.63	+0.1
3,319,426	-		IAI47_15740	0.63	+1.0
3,319,428	+		IAI47_15740	0.63	+0.0
3,319,429	-		IAI47_15740	0.63	-0.9
3,319,429	-		IAI47_15740	0.63	+0.5
3,319,429	-		IAI47_15740	0.63	+0.0
3,319,457	+		IAI47_15740	0.65	+1.8
3,319,468	+		IAI47_15740	0.66	-0.1
3,319,482	+		IAI47_15740	0.68	+1.1
3,319,501	-		IAI47_15740	0.69	-0.2
3,319,501	-		IAI47_15740	0.69	+0.0
3,319,501	-		IAI47_15740	0.69	-0.4
3,319,501	-		IAI47_15740	0.69	+1.0
3,319,501	-		IAI47_15740	0.69	-1.0
3,319,501	-		IAI47_15740	0.69	+0.4
3,319,501	-		IAI47_15740	0.69	+0.6
3,319,577	+		IAI47_15740	0.76	-1.3
3,319,593	+		IAI47_15740	0.77	-0.5
3,319,593	+		IAI47_15740	0.77	-0.9
3,319,594	-		IAI47_15740	0.77	+0.4
3,319,594	-		IAI47_15740	0.77	+1.6
3,319,594	-		IAI47_15740	0.77	-0.4
3,319,594	-		IAI47_15740	0.77	-1.0
3,319,594	-		IAI47_15740	0.77	+0.5
3,319,594	-		IAI47_15740	0.77	-1.3
3,319,651	+		IAI47_15740	0.82	+0.8
3,319,659	+		IAI47_15740	0.83	-0.2
3,319,660	-		IAI47_15740	0.83	+1.6
3,319,737	+		IAI47_15740	0.90	+0.5
3,319,737	+		IAI47_15740	0.90	+0.2
3,319,738	-		IAI47_15740	0.90	+0.6
3,319,738	-		IAI47_15740	0.90	+0.2
3,319,738	-		IAI47_15740	0.90	+0.2
3,319,738	-		IAI47_15740	0.90	-0.4
3,319,738	-		IAI47_15740	0.90	+0.2
3,319,738	-		IAI47_15740	0.90	+0.8
3,319,741	+				-1.1
3,319,741	+				+0.0
3,319,741	+				-0.8
3,319,742	-				-0.5
3,319,775	-				+0.0
3,319,821	+				-1.0
3,319,822	-				+0.6
3,319,822	-				+1.8
3,319,851	+				-0.4
3,319,852	-				+1.2
3,319,852	-				+1.4
3,319,870	+				-0.8
3,319,870	+				+0.6
3,319,870	+				+0.8
3,319,870	+				+1.6
3,319,870	+				-0.4
3,319,871	-				+0.3
3,319,879	-				-0.4
3,319,887	+				-0.3
3,320,002	+		IAI47_15745	0.15	+0.4
3,320,002	+		IAI47_15745	0.15	+0.6
3,320,002	+		IAI47_15745	0.15	-0.2
3,320,002	+		IAI47_15745	0.15	-0.2
3,320,003	-		IAI47_15745	0.16	-1.1
3,320,003	-		IAI47_15745	0.16	+0.5
3,320,088	+		IAI47_15745	0.25	+0.3
3,320,089	-		IAI47_15745	0.25	+1.8
3,320,098	+		IAI47_15745	0.26	-0.6
3,320,225	+		IAI47_15745	0.41	+1.4
3,320,226	-		IAI47_15745	0.41	+0.0
3,320,267	+		IAI47_15745	0.45	+1.2
3,320,267	+		IAI47_15745	0.45	-0.3
3,320,268	-		IAI47_15745	0.46	+0.5
3,320,268	-		IAI47_15745	0.46	+0.4
3,320,268	-		IAI47_15745	0.46	-0.8
3,320,269	+		IAI47_15745	0.46	+0.1
3,320,269	+		IAI47_15745	0.46	+1.0
3,320,269	+		IAI47_15745	0.46	-0.6
3,320,270	-		IAI47_15745	0.46	+0.2
3,320,270	-		IAI47_15745	0.46	+0.8
3,320,270	-		IAI47_15745	0.46	+0.7
3,320,270	-		IAI47_15745	0.46	-1.2
3,320,270	-		IAI47_15745	0.46	-0.4
3,320,293	+		IAI47_15745	0.48	+2.3
3,320,293	+		IAI47_15745	0.48	+0.8
3,320,294	-		IAI47_15745	0.48	-0.5
3,320,294	-		IAI47_15745	0.48	-0.2
3,320,294	-		IAI47_15745	0.48	+0.2
3,320,317	+		IAI47_15745	0.51	-0.0
3,320,318	-		IAI47_15745	0.51	-0.4
3,320,318	-		IAI47_15745	0.51	+1.2
3,320,369	+		IAI47_15745	0.57	-0.4
3,320,369	+		IAI47_15745	0.57	+0.4
3,320,369	+		IAI47_15745	0.57	-0.8
3,320,369	+		IAI47_15745	0.57	+0.7
3,320,369	+		IAI47_15745	0.57	-0.4
3,320,551	+		IAI47_15745	0.78	-0.6
3,320,606	+		IAI47_15745	0.84	-0.8
3,320,607	-		IAI47_15745	0.84	-0.4
3,320,607	-		IAI47_15745	0.84	+0.3
3,320,607	-		IAI47_15745	0.84	-0.4
3,320,738	+				-1.2
3,320,738	+				-0.5
3,320,739	-				+0.0
3,320,739	-				-0.4
3,320,739	-				+0.2
3,320,748	-				-1.2
3,320,748	-				+0.5
3,320,748	-				+0.2
3,320,765	+				+0.3
3,320,765	+				-0.6
3,320,766	-				-2.6
3,320,766	-				+0.2
3,320,766	-				+1.8
3,320,766	-				+0.8
3,320,771	-				+0.8