Strain Fitness in Pantoea sp. MT58 around IAI47_14090

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
2,975,839	+		IAI47_14085	0.47	+1.4
2,975,839	+		IAI47_14085	0.47	+0.8
2,975,906	+		IAI47_14085	0.52	+0.7
2,975,906	+		IAI47_14085	0.52	-0.3
2,975,906	+		IAI47_14085	0.52	+0.8
2,975,906	+		IAI47_14085	0.52	+0.5
2,975,907	-		IAI47_14085	0.53	+1.2
2,975,907	-		IAI47_14085	0.53	+0.4
2,975,907	-		IAI47_14085	0.53	+0.3
2,975,907	-		IAI47_14085	0.53	+0.2
2,975,907	-		IAI47_14085	0.53	-0.5
2,975,928	+		IAI47_14085	0.54	-0.0
2,975,934	+		IAI47_14085	0.55	-0.4
2,975,986	-		IAI47_14085	0.59	+0.2
2,976,015	+		IAI47_14085	0.61	+0.4
2,976,015	+		IAI47_14085	0.61	-0.5
2,976,015	+		IAI47_14085	0.61	-0.7
2,976,015	+		IAI47_14085	0.61	+0.2
2,976,016	-		IAI47_14085	0.61	-0.5
2,976,016	-		IAI47_14085	0.61	-0.5
2,976,030	+		IAI47_14085	0.62	-0.5
2,976,119	+		IAI47_14085	0.69	+0.8
2,976,119	+		IAI47_14085	0.69	+0.5
2,976,119	+		IAI47_14085	0.69	-1.0
2,976,119	+		IAI47_14085	0.69	-1.6
2,976,119	+		IAI47_14085	0.69	+0.5
2,976,120	-		IAI47_14085	0.69	-0.4
2,976,120	-		IAI47_14085	0.69	-1.1
2,976,120	-		IAI47_14085	0.69	+1.5
2,976,120	-		IAI47_14085	0.69	+0.1
2,976,120	-		IAI47_14085	0.69	+0.8
2,976,157	+		IAI47_14085	0.72	-0.5
2,976,158	-		IAI47_14085	0.72	-0.2
2,976,175	+		IAI47_14085	0.73	-0.5
2,976,175	+		IAI47_14085	0.73	-0.0
2,976,176	-		IAI47_14085	0.73	+0.3
2,976,191	+		IAI47_14085	0.74	+0.0
2,976,191	+		IAI47_14085	0.74	-0.6
2,976,191	+		IAI47_14085	0.74	+0.4
2,976,191	+		IAI47_14085	0.74	-0.5
2,976,191	+		IAI47_14085	0.74	-1.3
2,976,191	+		IAI47_14085	0.74	-0.6
2,976,192	-		IAI47_14085	0.74	-0.5
2,976,192	-		IAI47_14085	0.74	-1.2
2,976,213	+		IAI47_14085	0.76	-0.1
2,976,213	+		IAI47_14085	0.76	-0.0
2,976,213	+		IAI47_14085	0.76	-0.8
2,976,214	-		IAI47_14085	0.76	+0.0
2,976,283	-		IAI47_14085	0.81	+0.8
2,976,370	+		IAI47_14085	0.88	-0.8
2,976,370	+		IAI47_14085	0.88	+0.4
2,976,371	-		IAI47_14085	0.88	+0.6
2,976,371	-		IAI47_14085	0.88	+0.5
2,976,390	+		IAI47_14085	0.89	-0.1
2,976,390	+		IAI47_14085	0.89	+0.8
2,976,390	+		IAI47_14085	0.89	-0.9
2,976,390	+		IAI47_14085	0.89	+0.1
2,976,391	-		IAI47_14085	0.89	-0.3
2,976,393	+		IAI47_14085	0.89	+0.1
2,976,393	+		IAI47_14085	0.89	+1.3
2,976,393	+		IAI47_14085	0.89	+0.1
2,976,393	-		IAI47_14085	0.89	+0.2
2,976,394	-		IAI47_14085	0.90	+1.6
2,976,394	-		IAI47_14085	0.90	-0.4
2,976,394	-		IAI47_14085	0.90	-1.8
2,976,399	+		IAI47_14085	0.90	+1.3
2,976,399	+		IAI47_14085	0.90	-0.1
2,976,400	-				-0.8
2,976,400	-				+0.4
2,976,457	-				-0.0
2,976,457	-				-0.3
2,976,472	-				+0.5
2,976,518	+				+1.1
2,976,518	+				+0.6
2,976,518	+				-2.1
2,976,518	+				+0.4
2,976,519	-				-1.5
2,976,519	-				-0.6
2,976,519	-				+1.2
2,976,519	-				+0.8
2,976,519	-				-0.3
2,976,519	-				-0.4
2,976,519	-				+0.5
2,976,519	-				+0.6
2,976,523	+				-0.2
2,976,523	+				-0.4
2,976,523	+				-0.2
2,976,524	-				+0.4
2,976,524	-				-0.8
2,976,524	-				-2.6
2,976,524	-				-0.2
2,976,531	+				+0.5
2,976,531	+				-2.6
2,976,532	-				+0.3
2,976,532	-				-0.6
2,976,532	-				+0.8
2,976,563	+				+1.4
2,976,563	+				-2.7
2,976,576	+				+0.2
2,976,576	+				-2.0
2,976,577	-				-0.2
2,976,577	-				+1.6
2,976,579	+				+0.4
2,976,617	+				-1.8
2,976,617	+				-0.3
2,976,617	+				-0.2
2,976,617	+				+1.8
2,976,618	-				-0.3
2,976,618	-				-0.6
2,976,618	-				+1.4
2,976,618	-				+0.5
2,976,626	+				+1.5
2,976,626	+				-0.5
2,976,626	+				-0.4
2,976,627	-				+0.7
2,976,627	-				-1.0
2,976,627	-				+0.3
2,976,627	-				+0.8
2,976,668	+				-0.8
2,976,747	-				-1.0
2,976,749	+				-0.8
2,976,750	-				-0.2
2,976,799	-				+0.2
2,976,808	+				-0.2
2,976,808	+				+0.8
2,976,809	-				+0.8
2,976,848	+				+1.5
2,976,848	+				-0.3
2,976,848	+				+0.8
2,976,848	+				+1.8
2,976,848	+				+0.0
2,976,848	+				+0.2
2,976,849	-				+0.0
2,976,849	-				-0.0
2,976,853	+				-0.2
2,976,854	-				+0.4
2,976,854	-				+1.1
2,976,854	-				-0.4
2,976,880	+				-2.1
2,976,889	+				-0.2
2,976,890	-				-1.2
2,976,890	-				+1.2
2,976,925	+				+1.2
2,976,926	-				+0.6
2,976,969	-		IAI47_14090	0.13	-0.4
2,977,003	+		IAI47_14090	0.16	-0.2
2,977,003	+		IAI47_14090	0.16	-1.5
2,977,003	+		IAI47_14090	0.16	+0.8
2,977,003	+		IAI47_14090	0.16	-0.5
2,977,003	+		IAI47_14090	0.16	-0.0
2,977,004	-		IAI47_14090	0.16	+1.2
2,977,004	-		IAI47_14090	0.16	+0.5
2,977,004	-		IAI47_14090	0.16	-0.2
2,977,004	-		IAI47_14090	0.16	+0.7
2,977,004	-		IAI47_14090	0.16	+1.6
2,977,090	-		IAI47_14090	0.23	-0.9
2,977,146	+		IAI47_14090	0.28	-0.8
2,977,146	+				-0.0
2,977,146	+		IAI47_14090	0.28	-0.4
2,977,146	+		IAI47_14090	0.28	+0.5
2,977,146	+		IAI47_14090	0.28	-0.2
2,977,147	-		IAI47_14090	0.28	-0.6
2,977,158	+		IAI47_14090	0.29	+0.0
2,977,158	+		IAI47_14090	0.29	+0.7
2,977,158	+		IAI47_14090	0.29	+1.0
2,977,159	-		IAI47_14090	0.29	-1.3
2,977,159	-		IAI47_14090	0.29	-1.3
2,977,159	-		IAI47_14090	0.29	+0.0
2,977,172	+		IAI47_14090	0.30	+0.2
2,977,237	+		IAI47_14090	0.36	-2.3
2,977,237	+		IAI47_14090	0.36	+0.8
2,977,278	+		IAI47_14090	0.40	+0.8
2,977,415	-		IAI47_14090	0.51	-0.3
2,977,433	+		IAI47_14090	0.53	-0.2
2,977,433	+		IAI47_14090	0.53	+0.8
2,977,433	+				-2.5
2,977,433	+		IAI47_14090	0.53	+0.2
2,977,434	-		IAI47_14090	0.53	+1.0
2,977,434	-		IAI47_14090	0.53	+0.1
2,977,434	-		IAI47_14090	0.53	+2.2
2,977,434	-		IAI47_14090	0.53	-2.0
2,977,434	-		IAI47_14090	0.53	-0.5
2,977,434	-		IAI47_14090	0.53	+0.6
2,977,434	-		IAI47_14090	0.53	-0.6
2,977,434	-		IAI47_14090	0.53	+1.2
2,977,434	-		IAI47_14090	0.53	-1.8
2,977,434	-		IAI47_14090	0.53	-1.4
2,977,495	+		IAI47_14090	0.58	+0.7
2,977,496	-		IAI47_14090	0.58	-0.4
2,977,621	+		IAI47_14090	0.69	-0.9
2,977,621	+		IAI47_14090	0.69	-1.9
2,977,621	+		IAI47_14090	0.69	+0.3
2,977,622	-		IAI47_14090	0.69	-0.3
2,977,644	+		IAI47_14090	0.71	+1.3
2,977,645	-		IAI47_14090	0.71	+1.4
2,977,645	-		IAI47_14090	0.71	+0.0
2,977,668	+		IAI47_14090	0.73	+0.4
2,977,668	+		IAI47_14090	0.73	+0.3
2,977,668	+		IAI47_14090	0.73	-1.2
2,977,668	+		IAI47_14090	0.73	+0.2
2,977,668	+		IAI47_14090	0.73	+0.0
2,977,669	-		IAI47_14090	0.74	-1.3
2,977,669	-		IAI47_14090	0.74	-0.5
2,977,669	-		IAI47_14090	0.74	-0.2
2,977,711	+		IAI47_14090	0.77	+1.1
2,977,749	+		IAI47_14090	0.81	-0.3
2,977,750	-		IAI47_14090	0.81	-0.4
2,977,750	-		IAI47_14090	0.81	+0.4
2,977,750	-		IAI47_14090	0.81	+0.5
2,977,750	-		IAI47_14090	0.81	+0.4
2,977,750	-		IAI47_14090	0.81	-0.2
2,977,916	+				-0.5
2,977,917	-				+0.2
2,977,945	+				-0.5
2,977,946	-				-0.4
2,978,082	+				-0.8
2,978,083	-				-0.5
2,978,098	+				+0.2
2,978,159	-				-0.6
2,978,159	-				-1.6
2,978,221	+		IAI47_14095	0.17	-1.0
2,978,222	-		IAI47_14095	0.17	-0.2
2,978,290	+		IAI47_14095	0.25	+0.7
2,978,290	+		IAI47_14095	0.25	+2.2
2,978,290	+		IAI47_14095	0.25	-0.6
2,978,291	-		IAI47_14095	0.25	+0.6
2,978,332	+		IAI47_14095	0.30	+1.4
2,978,332	+		IAI47_14095	0.30	-0.2
2,978,333	-		IAI47_14095	0.30	+0.3
2,978,333	-		IAI47_14095	0.30	+0.2
2,978,333	-		IAI47_14095	0.30	-0.7
2,978,432	+		IAI47_14095	0.42	+1.4
2,978,432	+		IAI47_14095	0.42	-0.8
2,978,432	+		IAI47_14095	0.42	-2.0
2,978,432	+		IAI47_14095	0.42	-0.6
2,978,432	+		IAI47_14095	0.42	+0.9
2,978,432	+		IAI47_14095	0.42	-1.1
2,978,432	+		IAI47_14095	0.42	-0.3
2,978,432	+		IAI47_14095	0.42	-1.4
2,978,433	-		IAI47_14095	0.42	+1.2
2,978,433	-		IAI47_14095	0.42	-1.8
2,978,433	-		IAI47_14095	0.42	-2.5
2,978,464	+		IAI47_14095	0.46	-0.2
2,978,465	-		IAI47_14095	0.46	-2.2
2,978,465	-		IAI47_14095	0.46	+1.1
2,978,465	-		IAI47_14095	0.46	-0.0
2,978,465	-		IAI47_14095	0.46	+0.1
2,978,523	+		IAI47_14095	0.53	-0.3
2,978,523	+		IAI47_14095	0.53	-0.8
2,978,524	-		IAI47_14095	0.53	+0.5
2,978,524	-		IAI47_14095	0.53	+0.0
2,978,524	-		IAI47_14095	0.53	-2.0
2,978,568	+		IAI47_14095	0.58	+0.4
2,978,568	+		IAI47_14095	0.58	+0.1
2,978,568	+		IAI47_14095	0.58	-0.4
2,978,569	-		IAI47_14095	0.58	-0.0
2,978,569	-		IAI47_14095	0.58	-0.5
2,978,571	+		IAI47_14095	0.59	+1.1
2,978,571	+		IAI47_14095	0.59	-0.5
2,978,613	+		IAI47_14095	0.64	-2.2
2,978,613	+		IAI47_14095	0.64	+0.5
2,978,613	+		IAI47_14095	0.64	-0.5
2,978,614	-		IAI47_14095	0.64	-0.3
2,978,614	-		IAI47_14095	0.64	+0.0
2,978,698	+		IAI47_14095	0.74	+0.4
2,978,698	+		IAI47_14095	0.74	-1.5
2,978,698	+		IAI47_14095	0.74	-0.8
2,978,698	+		IAI47_14095	0.74	-0.8
2,978,699	-		IAI47_14095	0.74	+0.7
2,978,699	-		IAI47_14095	0.74	-2.3
2,978,699	-		IAI47_14095	0.74	+0.2
2,978,699	-		IAI47_14095	0.74	-1.6
2,978,699	-		IAI47_14095	0.74	-0.3
2,978,769	+		IAI47_14095	0.82	+1.7
2,978,769	+		IAI47_14095	0.82	-0.2
2,978,769	+		IAI47_14095	0.82	-0.6
2,978,769	+		IAI47_14095	0.82	-0.4
2,978,770	-		IAI47_14095	0.82	-1.4
2,978,770	-		IAI47_14095	0.82	-0.5
2,978,773	-		IAI47_14095	0.83	-0.3
2,978,773	-		IAI47_14095	0.83	+0.8
2,978,773	-		IAI47_14095	0.83	+0.5
2,978,789	+		IAI47_14095	0.85	+0.4
2,978,851	+				-0.2
2,978,851	+				+0.8
2,978,851	+				+0.8
2,978,851	+				+0.5
2,978,851	+				+1.8
2,978,851	+				-0.9
2,978,852	-				-0.2
2,978,852	-				+2.1
2,978,852	-				+0.1
2,978,852	-				-0.8
2,978,852	-				-0.1
2,978,853	+				+0.4
2,978,853	+				+1.5
2,978,853	+				+0.8
2,978,853	+				+2.4
2,978,853	+				-0.2
2,978,853	+				-0.8
2,978,853	+				+0.2
2,978,854	-				+0.9
2,978,854	-				-1.5
2,978,854	-				+0.8
2,978,854	-				-0.9
2,978,854	-				+0.2
2,978,887	+				-0.2
2,978,887	+				+1.4
2,978,887	+				-1.5
2,978,887	+				-0.6
2,978,887	+				-0.2
2,978,887	+				+0.0
2,978,887	+				+0.5
2,978,887	+				-0.3
2,978,887	+				-0.3
2,978,887	+				-0.6
2,978,888	-				+0.2
2,978,888	-				-2.1
2,978,888	-				-1.0
2,978,888	-				-0.5
2,978,892	-				+1.8
2,978,892	-				+0.4
2,978,892	-				-0.9
2,978,905	+				+1.1
2,978,905	+				-0.2
2,978,906	-				-0.8
2,978,906	-				-0.5
2,978,906	-				+1.2
2,978,906	-				-1.2
2,978,928	+				+0.2
2,978,928	+				+0.6
2,978,928	+				-0.9
2,978,928	+				+0.2
2,978,928	+				+0.2
2,978,928	+				+0.8
2,978,929	-				-0.1
2,978,929	-				-1.2
2,978,929	-				-1.0