Strain Fitness in Pantoea sp. MT58 around IAI47_13900

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
2,942,126	+		IAI47_13895	0.17	-1.6
2,942,126	+		IAI47_13895	0.17	+0.9
2,942,126	+		IAI47_13895	0.17	-2.2
2,942,126	+		IAI47_13895	0.17	-0.3
2,942,126	+		IAI47_13895	0.17	+1.8
2,942,126	+		IAI47_13895	0.17	-0.6
2,942,127	-		IAI47_13895	0.17	-0.8
2,942,127	-		IAI47_13895	0.17	-0.2
2,942,201	+		IAI47_13895	0.27	+0.1
2,942,201	+		IAI47_13895	0.27	+0.5
2,942,201	+		IAI47_13895	0.27	-0.1
2,942,201	+		IAI47_13895	0.27	-0.3
2,942,202	-		IAI47_13895	0.27	-0.7
2,942,202	-		IAI47_13895	0.27	+0.0
2,942,202	-		IAI47_13895	0.27	+1.8
2,942,202	-		IAI47_13895	0.27	-1.3
2,942,203	+		IAI47_13895	0.27	+0.5
2,942,204	-		IAI47_13895	0.27	+0.5
2,942,258	+		IAI47_13895	0.35	+1.1
2,942,258	+		IAI47_13895	0.35	+1.0
2,942,259	-		IAI47_13895	0.35	+0.8
2,942,259	-		IAI47_13895	0.35	+1.8
2,942,259	-		IAI47_13895	0.35	+0.4
2,942,259	-		IAI47_13895	0.35	+0.4
2,942,259	-		IAI47_13895	0.35	-0.5
2,942,259	-		IAI47_13895	0.35	+0.4
2,942,259	-		IAI47_13895	0.35	-0.8
2,942,259	-		IAI47_13895	0.35	+3.8
2,942,259	-		IAI47_13895	0.35	+0.6
2,942,294	+		IAI47_13895	0.39	+1.3
2,942,294	+		IAI47_13895	0.39	-0.5
2,942,295	-		IAI47_13895	0.40	+0.5
2,942,295	-		IAI47_13895	0.40	-0.9
2,942,295	-		IAI47_13895	0.40	-0.6
2,942,295	-		IAI47_13895	0.40	+1.4
2,942,295	-		IAI47_13895	0.40	+0.1
2,942,295	-		IAI47_13895	0.40	-0.3
2,942,308	+		IAI47_13895	0.41	+0.0
2,942,309	-		IAI47_13895	0.41	+0.7
2,942,314	+		IAI47_13895	0.42	-0.5
2,942,314	+		IAI47_13895	0.42	+0.3
2,942,314	+		IAI47_13895	0.42	+0.5
2,942,314	+		IAI47_13895	0.42	-0.2
2,942,315	-		IAI47_13895	0.42	+1.5
2,942,380	+		IAI47_13895	0.51	+0.8
2,942,380	+		IAI47_13895	0.51	+1.8
2,942,380	+		IAI47_13895	0.51	+0.0
2,942,380	+		IAI47_13895	0.51	+0.6
2,942,380	+		IAI47_13895	0.51	+0.1
2,942,380	+		IAI47_13895	0.51	-0.2
2,942,380	+		IAI47_13895	0.51	+0.0
2,942,381	-		IAI47_13895	0.51	-0.8
2,942,381	-		IAI47_13895	0.51	+1.1
2,942,381	-		IAI47_13895	0.51	-0.8
2,942,381	-		IAI47_13895	0.51	+1.8
2,942,381	-		IAI47_13895	0.51	+0.4
2,942,453	-		IAI47_13895	0.61	-0.4
2,942,453	-		IAI47_13895	0.61	-1.4
2,942,453	-		IAI47_13895	0.61	+0.6
2,942,453	-		IAI47_13895	0.61	+0.1
2,942,453	-		IAI47_13895	0.61	-1.3
2,942,453	-		IAI47_13895	0.61	+1.1
2,942,534	+		IAI47_13895	0.71	+0.5
2,942,535	-		IAI47_13895	0.71	-0.7
2,942,535	-		IAI47_13895	0.71	+0.2
2,942,615	-		IAI47_13895	0.82	+1.0
2,942,683	+				+1.0
2,942,684	-				+1.1
2,942,692	+				+0.6
2,942,692	+				+1.8
2,942,692	+				-0.2
2,942,692	+				-0.3
2,942,692	+				+1.3
2,942,692	+				+0.8
2,942,693	-				-0.8
2,942,693	-				+0.1
2,942,693	-				-1.0
2,942,693	-				-0.2
2,942,693	-				+0.1
2,942,693	-				-0.8
2,942,693	-				-0.2
2,942,693	-				+0.2
2,942,693	-				-0.3
2,942,718	-				+0.1
2,942,718	-				+0.1
2,942,718	-				-1.1
2,942,718	-				+1.6
2,942,734	+				+0.4
2,942,762	-				-0.6
2,942,776	+				+0.5
2,942,776	+				+0.2
2,942,965	+				+1.2
2,942,966	-				-3.4
2,942,970	-				-1.5
2,942,970	-				-0.8
2,942,982	+				+0.7
2,942,982	+				-0.7
2,942,982	+				+0.2
2,942,983	-				-2.5
2,942,983	-				-2.2
2,942,983	-				-4.2
2,942,986	+				-0.0
2,942,987	-				-2.0
2,943,017	+				+1.1
2,943,018	-				-2.2
2,943,018	-				-1.0
2,943,018	-				-4.1
2,943,018	-				-2.4
2,943,018	-				-2.3
2,943,024	+				-1.5
2,943,024	+				-0.3
2,943,025	-				-2.3
2,943,025	-				-2.6
2,943,025	-				-1.8
2,943,025	-				-5.4
2,943,035	+				-1.3
2,943,057	+				-3.8
2,943,057	+				-2.6
2,943,057	+				+0.8
2,943,057	+				-2.6
2,943,057	+				-0.8
2,943,058	-				-2.2
2,943,058	-				-2.0
2,943,058	-				-2.2
2,943,058	-				-0.8
2,943,058	-				-2.3
2,943,058	-				-3.4
2,943,058	-				-3.3
2,943,058	-				-0.2
2,943,058	-				-2.6
2,943,137	+				-0.8
2,943,137	+				-3.2
2,943,137	+				-4.2
2,943,137	+				-3.4
2,943,138	-				-0.2
2,943,138	-				-3.8
2,943,138	-				-4.1
2,943,138	-				-1.2
2,943,189	+				-4.3
2,943,189	+				-2.6
2,943,189	+				-2.3
2,943,190	-				-2.0
2,943,190	-				+0.8
2,943,225	+		IAI47_13900	0.10	-2.5
2,943,247	+		IAI47_13900	0.11	-3.3
2,943,270	-		IAI47_13900	0.13	-2.5
2,943,270	-		IAI47_13900	0.13	-1.2
2,943,270	-		IAI47_13900	0.13	-2.9
2,943,270	-		IAI47_13900	0.13	-1.5
2,943,292	+		IAI47_13900	0.14	-2.3
2,943,292	+		IAI47_13900	0.14	-2.0
2,943,293	-		IAI47_13900	0.14	-4.2
2,943,293	-		IAI47_13900	0.14	+0.8
2,943,376	+		IAI47_13900	0.19	-2.3
2,943,376	+		IAI47_13900	0.19	-2.2
2,943,376	+		IAI47_13900	0.19	-4.3
2,943,377	-		IAI47_13900	0.19	-1.2
2,943,430	-		IAI47_13900	0.22	-2.2
2,943,430	-		IAI47_13900	0.22	-2.2
2,943,430	-		IAI47_13900	0.22	-2.0
2,943,436	+		IAI47_13900	0.23	-2.7
2,943,436	+		IAI47_13900	0.23	-1.2
2,943,437	-		IAI47_13900	0.23	-3.5
2,943,496	+		IAI47_13900	0.26	-3.9
2,943,496	+		IAI47_13900	0.26	-1.5
2,943,496	+		IAI47_13900	0.26	-3.2
2,943,496	+		IAI47_13900	0.26	-0.2
2,943,496	+		IAI47_13900	0.26	+0.8
2,943,496	+		IAI47_13900	0.26	-2.2
2,943,496	+		IAI47_13900	0.26	-2.8
2,943,496	+		IAI47_13900	0.26	-2.6
2,943,496	+		IAI47_13900	0.26	-3.7
2,943,496	+		IAI47_13900	0.26	-1.8
2,943,496	+		IAI47_13900	0.26	-2.5
2,943,496	+		IAI47_13900	0.26	-3.8
2,943,497	-		IAI47_13900	0.26	-3.1
2,943,497	-		IAI47_13900	0.26	-1.5
2,943,497	-		IAI47_13900	0.26	-2.6
2,943,497	-		IAI47_13900	0.26	-3.5
2,943,497	-		IAI47_13900	0.26	-2.3
2,943,497	-		IAI47_13900	0.26	+0.8
2,943,497	-		IAI47_13900	0.26	-3.1
2,943,498	+		IAI47_13900	0.26	-3.9
2,943,498	+		IAI47_13900	0.26	-1.5
2,943,498	+		IAI47_13900	0.26	-2.2
2,943,499	-		IAI47_13900	0.26	-3.2
2,943,499	-		IAI47_13900	0.26	-2.2
2,943,595	+		IAI47_13900	0.32	-2.5
2,943,595	+		IAI47_13900	0.32	-1.5
2,943,595	+		IAI47_13900	0.32	-1.5
2,943,595	+		IAI47_13900	0.32	-2.0
2,943,595	+		IAI47_13900	0.32	-1.2
2,943,595	+		IAI47_13900	0.32	-2.8
2,943,595	+		IAI47_13900	0.32	-2.6
2,943,595	+		IAI47_13900	0.32	-2.6
2,943,595	+		IAI47_13900	0.32	-2.0
2,943,595	+		IAI47_13900	0.32	-2.5
2,943,596	-		IAI47_13900	0.32	-3.2
2,943,596	-		IAI47_13900	0.32	-2.4
2,943,596	-		IAI47_13900	0.32	-3.3
2,943,596	-		IAI47_13900	0.32	-2.8
2,943,652	+		IAI47_13900	0.36	-3.1
2,943,653	-		IAI47_13900	0.36	-4.8
2,943,740	+		IAI47_13900	0.41	-3.3
2,943,740	+		IAI47_13900	0.41	-2.0
2,943,740	+		IAI47_13900	0.41	-2.2
2,943,740	+		IAI47_13900	0.41	-3.3
2,943,740	+		IAI47_13900	0.41	-2.3
2,943,740	+		IAI47_13900	0.41	-3.1
2,943,740	+		IAI47_13900	0.41	-2.0
2,943,741	-		IAI47_13900	0.41	-1.8
2,943,741	-		IAI47_13900	0.41	-1.5
2,943,741	-		IAI47_13900	0.41	-2.1
2,943,741	-		IAI47_13900	0.41	-1.2
2,943,741	-		IAI47_13900	0.41	-2.3
2,943,741	-		IAI47_13900	0.41	-2.9
2,943,741	-		IAI47_13900	0.41	-3.1
2,943,741	-		IAI47_13900	0.41	-3.0
2,943,741	-		IAI47_13900	0.41	-3.0
2,943,741	-		IAI47_13900	0.41	-2.9
2,943,746	-		IAI47_13900	0.41	-3.2
2,943,746	-		IAI47_13900	0.41	-3.5
2,943,899	+		IAI47_13900	0.50	-3.0
2,943,997	+		IAI47_13900	0.56	-3.3
2,943,998	-		IAI47_13900	0.56	-2.6
2,944,012	+		IAI47_13900	0.57	-1.2
2,944,012	+		IAI47_13900	0.57	-0.8
2,944,013	-		IAI47_13900	0.57	-2.3
2,944,013	-		IAI47_13900	0.57	-2.8
2,944,026	+		IAI47_13900	0.58	-1.2
2,944,038	+		IAI47_13900	0.59	-2.6
2,944,048	+		IAI47_13900	0.59	-2.8
2,944,053	-		IAI47_13900	0.60	-3.1
2,944,083	+		IAI47_13900	0.61	-1.8
2,944,084	-		IAI47_13900	0.62	-1.2
2,944,130	-		IAI47_13900	0.64	-2.8
2,944,130	-		IAI47_13900	0.64	-4.3
2,944,135	+		IAI47_13900	0.65	-1.2
2,944,135	+		IAI47_13900	0.65	-2.6
2,944,136	-		IAI47_13900	0.65	-1.5
2,944,144	-		IAI47_13900	0.65	-2.8
2,944,144	-		IAI47_13900	0.65	-2.0
2,944,185	+		IAI47_13900	0.68	-0.2
2,944,203	+		IAI47_13900	0.69	-2.6
2,944,203	+		IAI47_13900	0.69	-2.8
2,944,203	+		IAI47_13900	0.69	-3.4
2,944,203	+		IAI47_13900	0.69	-4.2
2,944,203	+		IAI47_13900	0.69	-3.1
2,944,203	+		IAI47_13900	0.69	-2.5
2,944,203	+		IAI47_13900	0.69	-2.2
2,944,203	+		IAI47_13900	0.69	-1.2
2,944,204	-		IAI47_13900	0.69	-2.9
2,944,204	-		IAI47_13900	0.69	-0.8
2,944,204	-		IAI47_13900	0.69	-0.2
2,944,204	-		IAI47_13900	0.69	-2.0
2,944,204	-		IAI47_13900	0.69	-2.6
2,944,204	-		IAI47_13900	0.69	-2.2
2,944,204	-		IAI47_13900	0.69	-3.3
2,944,224	+		IAI47_13900	0.70	-0.8
2,944,224	+		IAI47_13900	0.70	-1.2
2,944,262	+		IAI47_13900	0.72	-5.0
2,944,262	+		IAI47_13900	0.72	-3.3
2,944,338	+		IAI47_13900	0.77	-3.3
2,944,378	+		IAI47_13900	0.79	-2.5
2,944,378	+		IAI47_13900	0.79	-2.3
2,944,379	-		IAI47_13900	0.79	-4.9
2,944,546	+		IAI47_13900	0.89	-3.1
2,944,546	+		IAI47_13900	0.89	-3.1
2,944,546	+		IAI47_13900	0.89	-3.3
2,944,546	+		IAI47_13900	0.89	-3.6
2,944,546	+		IAI47_13900	0.89	-1.3
2,944,547	-		IAI47_13900	0.89	-0.9
2,944,552	+		IAI47_13900	0.90	-2.6
2,944,552	+		IAI47_13900	0.90	-3.2
2,944,553	-		IAI47_13900	0.90	-4.5
2,944,553	-		IAI47_13900	0.90	-1.5
2,944,583	+				-2.9
2,944,665	+				-3.0
2,944,717	+				-1.2
2,944,717	+				-0.4
2,944,718	-				-1.2
2,944,718	-				+0.2
2,944,723	+				-0.2
2,944,723	+				+0.1
2,944,723	+				-1.2
2,944,723	+				+0.3
2,944,723	+				-0.8
2,944,723	+				-0.4
2,944,723	+				+1.8
2,944,723	+				-1.5
2,944,723	+				-0.2
2,944,724	-				-1.6
2,944,724	-				+0.4
2,944,778	+				+0.1
2,944,779	-				-0.2
2,944,786	+				+0.6
2,944,787	-				-1.0
2,944,787	-				+0.8
2,944,787	-				-1.9
2,944,787	-				+0.5
2,944,787	-				+0.4
2,944,787	-				+0.1
2,944,825	+				-1.8
2,944,825	+				-1.1
2,944,825	+				-0.8
2,944,826	-				+0.6
2,944,826	-				-0.4
2,944,826	-				+0.0
2,944,827	+				-1.0
2,944,827	+				-2.3
2,944,827	+				-0.8
2,944,827	+				-0.3
2,944,827	+				+0.8
2,944,827	+				-1.4
2,944,828	-				-0.0
2,944,828	-				-0.0
2,944,828	-				-0.4
2,944,847	+				+0.5
2,944,847	+				+0.4
2,944,848	-				+0.2
2,944,865	-				+1.2
2,945,155	+		IAI47_13915	0.24	-0.2
2,945,228	+				+0.8
2,945,228	+				-2.3
2,945,228	+				-0.2
2,945,414	+		IAI47_13925	0.88	-0.8
2,945,414	+		IAI47_13925	0.88	-0.8
2,945,414	+		IAI47_13925	0.88	+0.7
2,945,423	+				-0.1
2,945,423	+				-3.0
2,945,423	+				-1.0
2,945,425	+				-2.2
2,945,425	+				+2.4
2,945,425	+				-1.4
2,945,425	+				+1.7
2,945,425	+				-0.8
2,945,425	+				-0.8
2,945,425	+				+0.6
2,945,425	+				-1.2
2,945,425	+				+0.6
2,945,425	+				+0.4
2,945,425	+				-1.2
2,945,504	+				+0.3
2,945,504	+				-0.2
2,945,504	+				+1.1
2,945,504	+				+0.3
2,945,504	+				-0.1
2,945,504	+				-0.3
2,945,530	+				-0.0
2,945,569	+		IAI47_13935	0.48	+0.3
2,945,721	+				+1.1
2,945,721	+				-0.4
2,945,722	-				-0.0
2,945,722	-				-0.4
2,945,722	-				+1.6
2,945,723	+				-0.5
2,945,724	-				+0.5