Strain Fitness in Pantoea sp. MT58 around IAI47_13340

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
2,821,380	+		IAI47_13335	0.47	+1.9
2,821,380	+		IAI47_13335	0.47	+1.6
2,821,381	-		IAI47_13335	0.47	-0.6
2,821,409	+		IAI47_13335	0.49	+1.2
2,821,409	+		IAI47_13335	0.49	+0.2
2,821,409	+		IAI47_13335	0.49	+0.9
2,821,410	-		IAI47_13335	0.49	-0.1
2,821,410	-		IAI47_13335	0.49	+0.3
2,821,444	+		IAI47_13335	0.51	-0.4
2,821,444	+		IAI47_13335	0.51	-0.4
2,821,460	+		IAI47_13335	0.52	+1.0
2,821,461	-		IAI47_13335	0.52	-2.6
2,821,461	-		IAI47_13335	0.52	-2.0
2,821,461	-		IAI47_13335	0.52	+0.1
2,821,529	+		IAI47_13335	0.57	+1.0
2,821,529	+		IAI47_13335	0.57	+1.0
2,821,530	-		IAI47_13335	0.57	+0.7
2,821,530	-		IAI47_13335	0.57	+1.1
2,821,530	-		IAI47_13335	0.57	-0.5
2,821,530	-		IAI47_13335	0.57	+0.1
2,821,530	-		IAI47_13335	0.57	-0.4
2,821,533	+		IAI47_13335	0.57	-0.2
2,821,533	+		IAI47_13335	0.57	+1.6
2,821,533	+		IAI47_13335	0.57	+0.3
2,821,533	+		IAI47_13335	0.57	-0.8
2,821,533	+		IAI47_13335	0.57	+1.2
2,821,533	+		IAI47_13335	0.57	+0.6
2,821,533	+		IAI47_13335	0.57	+0.7
2,821,533	+		IAI47_13335	0.57	+0.0
2,821,533	+		IAI47_13335	0.57	+0.2
2,821,533	+		IAI47_13335	0.57	+1.2
2,821,534	-		IAI47_13335	0.57	+0.4
2,821,534	-		IAI47_13335	0.57	-0.9
2,821,534	-		IAI47_13335	0.57	+0.8
2,821,534	-		IAI47_13335	0.57	+1.8
2,821,534	-		IAI47_13335	0.57	-0.4
2,821,534	-		IAI47_13335	0.57	+1.6
2,821,534	-		IAI47_13335	0.57	-1.2
2,821,557	+		IAI47_13335	0.59	-0.5
2,821,558	-		IAI47_13335	0.59	-0.9
2,821,586	+		IAI47_13335	0.61	+0.0
2,821,586	+		IAI47_13335	0.61	-0.8
2,821,586	+		IAI47_13335	0.61	-0.1
2,821,586	+		IAI47_13335	0.61	+0.1
2,821,586	+		IAI47_13335	0.61	-1.3
2,821,586	+		IAI47_13335	0.61	-0.7
2,821,586	+		IAI47_13335	0.61	-0.5
2,821,586	+		IAI47_13335	0.61	-0.0
2,821,587	-		IAI47_13335	0.61	-0.6
2,821,587	-		IAI47_13335	0.61	+0.8
2,821,593	-		IAI47_13335	0.61	-2.0
2,821,611	+		IAI47_13335	0.62	-0.8
2,821,611	+		IAI47_13335	0.62	+0.8
2,821,612	-		IAI47_13335	0.62	-2.0
2,821,612	-		IAI47_13335	0.62	-0.2
2,821,613	+		IAI47_13335	0.62	+1.6
2,821,613	+		IAI47_13335	0.62	+0.6
2,821,614	-		IAI47_13335	0.62	+0.5
2,821,643	+		IAI47_13335	0.64	-0.1
2,821,643	+		IAI47_13335	0.64	+0.2
2,821,643	+		IAI47_13335	0.64	+0.1
2,821,644	-		IAI47_13335	0.64	-0.6
2,821,644	-		IAI47_13335	0.64	-0.8
2,821,644	-		IAI47_13335	0.64	-0.7
2,821,786	-		IAI47_13335	0.74	+1.8
2,821,863	-		IAI47_13335	0.79	-0.4
2,821,941	+		IAI47_13335	0.85	-1.8
2,822,130	+				-0.1
2,822,130	+				+1.5
2,822,131	-				-0.8
2,822,314	+				-0.2
2,822,314	+				-0.8
2,822,315	-				-0.6
2,822,315	-				+1.0
2,822,315	-				+0.8
2,822,315	-				+0.4
2,822,328	+				-0.3
2,822,364	+				-1.5
2,822,364	+				-0.5
2,822,386	+		IAI47_13340	0.11	-0.5
2,822,386	+				+0.3
2,822,386	+		IAI47_13340	0.11	+0.4
2,822,387	-		IAI47_13340	0.11	+0.7
2,822,387	-		IAI47_13340	0.11	-0.0
2,822,387	-		IAI47_13340	0.11	+0.4
2,822,387	-		IAI47_13340	0.11	+0.6
2,822,457	+		IAI47_13340	0.24	-1.6
2,822,485	+		IAI47_13340	0.29	-0.4
2,822,486	-		IAI47_13340	0.29	-0.6
2,822,529	+		IAI47_13340	0.37	-1.6
2,822,529	+		IAI47_13340	0.37	-0.9
2,822,529	+		IAI47_13340	0.37	+0.1
2,822,529	+		IAI47_13340	0.37	-0.1
2,822,529	+		IAI47_13340	0.37	-1.8
2,822,529	+		IAI47_13340	0.37	+1.3
2,822,529	+		IAI47_13340	0.37	-0.3
2,822,530	-		IAI47_13340	0.37	+0.8
2,822,530	-		IAI47_13340	0.37	+0.4
2,822,530	-		IAI47_13340	0.37	-0.1
2,822,530	-		IAI47_13340	0.37	+0.4
2,822,530	-		IAI47_13340	0.37	+0.8
2,822,530	-		IAI47_13340	0.37	+0.8
2,822,530	-		IAI47_13340	0.37	-1.3
2,822,530	-		IAI47_13340	0.37	+0.7
2,822,532	-		IAI47_13340	0.38	+0.4
2,822,567	-		IAI47_13340	0.44	-0.3
2,822,568	+		IAI47_13340	0.44	+0.6
2,822,568	+		IAI47_13340	0.44	+0.9
2,822,569	-		IAI47_13340	0.45	+1.3
2,822,569	-		IAI47_13340	0.45	-0.5
2,822,569	-		IAI47_13340	0.45	-0.2
2,822,569	-		IAI47_13340	0.45	+0.8
2,822,569	-		IAI47_13340	0.45	-2.7
2,822,569	-		IAI47_13340	0.45	+0.4
2,822,569	-		IAI47_13340	0.45	-0.5
2,822,605	+		IAI47_13340	0.51	-1.0
2,822,605	+		IAI47_13340	0.51	-1.8
2,822,606	-		IAI47_13340	0.51	+0.3
2,822,606	-		IAI47_13340	0.51	-1.1
2,822,606	-		IAI47_13340	0.51	-0.3
2,822,606	-		IAI47_13340	0.51	-1.1
2,822,606	-		IAI47_13340	0.51	+0.0
2,822,662	-		IAI47_13340	0.62	+2.1
2,822,662	-		IAI47_13340	0.62	-1.3
2,822,683	+		IAI47_13340	0.66	+0.2
2,822,683	+		IAI47_13340	0.66	+1.2
2,822,684	-		IAI47_13340	0.66	-0.8
2,822,684	-		IAI47_13340	0.66	+0.4
2,822,684	-		IAI47_13340	0.66	+0.3
2,822,684	-		IAI47_13340	0.66	+0.4
2,822,690	+		IAI47_13340	0.67	-1.8
2,822,691	-		IAI47_13340	0.67	+1.1
2,822,691	-		IAI47_13340	0.67	-1.6
2,822,706	+		IAI47_13340	0.70	-1.2
2,822,706	+		IAI47_13340	0.70	+0.4
2,822,706	+		IAI47_13340	0.70	-0.4
2,822,706	+		IAI47_13340	0.70	-0.7
2,822,706	+		IAI47_13340	0.70	+0.1
2,822,706	+		IAI47_13340	0.70	+0.1
2,822,706	+		IAI47_13340	0.70	+0.6
2,822,707	-		IAI47_13340	0.70	+1.8
2,822,707	-		IAI47_13340	0.70	-0.8
2,822,707	-		IAI47_13340	0.70	+0.1
2,822,707	-		IAI47_13340	0.70	-3.3
2,822,707	-		IAI47_13340	0.70	+1.6
2,822,707	-		IAI47_13340	0.70	+0.8
2,822,707	-		IAI47_13340	0.70	-0.3
2,822,707	-		IAI47_13340	0.70	+0.2
2,822,707	-		IAI47_13340	0.70	-0.7
2,822,707	-		IAI47_13340	0.70	+0.6
2,822,707	-		IAI47_13340	0.70	+1.3
2,822,707	-		IAI47_13340	0.70	-1.2
2,822,707	-		IAI47_13340	0.70	+0.0
2,822,707	-		IAI47_13340	0.70	-0.7
2,822,707	-		IAI47_13340	0.70	-1.1
2,822,710	+		IAI47_13340	0.71	-0.3
2,822,710	+		IAI47_13340	0.71	-1.2
2,822,710	+		IAI47_13340	0.71	+0.6
2,822,710	+		IAI47_13340	0.71	-0.0
2,822,710	+		IAI47_13340	0.71	-1.3
2,822,711	-		IAI47_13340	0.71	-0.5
2,822,711	-		IAI47_13340	0.71	-0.2
2,822,711	-		IAI47_13340	0.71	+1.1
2,822,711	-		IAI47_13340	0.71	+0.3
2,822,711	-		IAI47_13340	0.71	-0.8
2,822,732	+		IAI47_13340	0.75	-0.2
2,822,760	+		IAI47_13340	0.80	-0.2
2,822,760	+		IAI47_13340	0.80	-0.3
2,822,760	+		IAI47_13340	0.80	-0.8
2,822,761	-		IAI47_13340	0.80	+0.8
2,822,761	-		IAI47_13340	0.80	+0.1
2,822,761	-		IAI47_13340	0.80	-0.8
2,822,761	-		IAI47_13340	0.80	+2.1
2,822,851	+				-0.4
2,822,852	-				+0.5
2,822,860	+				+0.3
2,822,860	+				+0.1
2,822,860	+				-1.0
2,822,860	+				+0.8
2,822,861	-				-1.5
2,822,861	-				-0.9
2,822,887	-				+1.6
2,822,896	+				-2.2
2,822,896	+				+2.4
2,822,896	+				-0.5
2,822,896	+				-0.2
2,822,896	+				-0.5
2,822,897	-				+0.3
2,822,897	-				-0.8
2,822,897	-				-2.0
2,822,897	-				-0.0
2,822,897	-				-0.2
2,822,897	-				+0.6
2,822,897	-				+0.3
2,822,897	-				+0.2
2,822,944	-				+0.8
2,822,962	+				-0.8
2,822,962	+				+0.4
2,822,962	+				-1.3
2,822,963	-				-0.2
2,823,017	+				-2.0
2,823,017	+				+0.7
2,823,017	+				+1.1
2,823,017	+				+0.6
2,823,018	-				+0.8
2,823,018	-				-2.1
2,823,018	-				+0.7
2,823,018	-				-2.2
2,823,018	-				-0.3
2,823,018	-				-0.4
2,823,018	-				+0.4
2,823,054	+				-0.8
2,823,055	-				+1.9
2,823,138	+				+1.0
2,823,138	+				+0.6
2,823,282	+		IAI47_13345	0.14	-0.9
2,823,283	-		IAI47_13345	0.14	+1.7
2,823,319	-		IAI47_13345	0.16	-0.1
2,823,336	+		IAI47_13345	0.17	-0.2
2,823,357	+		IAI47_13345	0.18	+0.5
2,823,358	-		IAI47_13345	0.18	+0.4
2,823,441	+		IAI47_13345	0.22	+0.2
2,823,441	+		IAI47_13345	0.22	+0.4
2,823,469	+		IAI47_13345	0.24	+1.2
2,823,470	-		IAI47_13345	0.24	+0.8
2,823,480	+		IAI47_13345	0.24	+0.2
2,823,492	+		IAI47_13345	0.25	+0.6
2,823,493	-		IAI47_13345	0.25	+0.5
2,823,493	-		IAI47_13345	0.25	+0.4
2,823,591	+		IAI47_13345	0.30	-2.0
2,823,591	+		IAI47_13345	0.30	+0.2
2,823,592	-		IAI47_13345	0.30	+0.0
2,823,688	-		IAI47_13345	0.35	+0.3
2,823,786	-		IAI47_13345	0.41	-1.6
2,823,786	-		IAI47_13345	0.41	-0.4
2,823,786	-		IAI47_13345	0.41	+0.5
2,823,786	-		IAI47_13345	0.41	-1.5