Strain Fitness in Pantoea sp. MT58 around IAI47_12460

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
2,625,030	+		IAI47_12440	0.70	+0.1
2,625,031	-		IAI47_12440	0.70	-0.2
2,625,031	-		IAI47_12440	0.70	+0.1
2,625,036	+		IAI47_12440	0.71	-0.1
2,625,036	+		IAI47_12440	0.71	+0.2
2,625,036	+		IAI47_12440	0.71	+1.7
2,625,036	+		IAI47_12440	0.71	+1.1
2,625,037	-		IAI47_12440	0.71	-0.7
2,625,037	-		IAI47_12440	0.71	-0.3
2,625,052	+		IAI47_12440	0.73	+0.8
2,625,058	+		IAI47_12440	0.73	-1.1
2,625,058	+		IAI47_12440	0.73	-0.3
2,625,058	+		IAI47_12440	0.73	-2.1
2,625,058	+		IAI47_12440	0.73	+0.2
2,625,058	+		IAI47_12440	0.73	+0.5
2,625,059	-		IAI47_12440	0.74	+0.8
2,625,059	-		IAI47_12440	0.74	-0.8
2,625,059	-		IAI47_12440	0.74	-1.0
2,625,059	-		IAI47_12440	0.74	-0.7
2,625,059	-		IAI47_12440	0.74	-0.9
2,625,061	+		IAI47_12440	0.74	-0.2
2,625,062	-		IAI47_12440	0.74	-0.8
2,625,062	-		IAI47_12440	0.74	+0.1
2,625,144	+		IAI47_12440	0.84	+0.8
2,625,144	+		IAI47_12440	0.84	+1.0
2,625,145	-		IAI47_12440	0.84	-0.3
2,625,145	-		IAI47_12440	0.84	+0.9
2,625,159	+		IAI47_12440	0.85	+1.4
2,625,159	+		IAI47_12440	0.85	-0.4
2,625,159	+		IAI47_12440	0.85	-1.5
2,625,159	+		IAI47_12440	0.85	+0.0
2,625,159	+		IAI47_12440	0.85	+0.3
2,625,160	-		IAI47_12440	0.85	+0.5
2,625,160	-		IAI47_12440	0.85	-0.8
2,625,160	-		IAI47_12440	0.85	-0.7
2,625,160	-		IAI47_12440	0.85	+0.2
2,625,160	-		IAI47_12440	0.85	-0.9
2,625,160	-		IAI47_12440	0.85	-2.1
2,625,160	-		IAI47_12440	0.85	-1.5
2,625,197	+		IAI47_12440	0.90	-1.0
2,625,198	-				-0.1
2,625,225	+				-1.3
2,625,225	+				+0.1
2,625,232	-				-0.2
2,625,241	+				+0.4
2,625,242	-				-0.7
2,625,310	+				+0.3
2,625,311	-				-0.0
2,625,311	-				+0.3
2,625,311	-				-0.0
2,625,311	-				-1.0
2,625,313	+				-0.5
2,625,313	+				-0.0
2,625,313	+				-0.8
2,625,326	-				-0.1
2,625,354	-				+1.8
2,625,396	+				-0.7
2,625,396	+				-0.9
2,625,397	-				+0.8
2,625,432	-				+0.8
2,625,432	-				-0.2
2,625,442	+				-1.2
2,625,478	+				+0.8
2,625,478	+				+2.4
2,625,478	+				-0.8
2,625,478	+				+0.0
2,625,479	-				+0.8
2,625,557	-				+1.3
2,625,575	-				-0.2
2,625,583	-				+1.2
2,626,057	-				+0.1
2,626,057	-				-0.3
2,626,594	-				-2.0
2,626,594	-				-0.8
2,626,594	-				-0.3
2,626,605	-				-0.2
2,626,610	-				+0.4
2,626,610	-				+1.0
2,626,642	+				-0.4
2,626,642	+				+0.8
2,626,642	+				-0.5
2,626,657	+				-0.6
2,626,657	+				+0.9
2,626,657	+				+0.1
2,626,658	-				-1.0
2,626,658	-				-0.2
2,626,658	-				+3.8
2,626,658	-				+0.2
2,626,660	+				+0.6
2,626,663	-				-0.1
2,626,750	+				-0.2
2,626,750	+				+0.3
2,626,751	-				+2.5
2,626,751	-				+1.8
2,626,751	-				+1.2
2,626,751	-				-1.8
2,626,751	-				+0.6
2,626,754	+				+0.2
2,626,754	+				-0.2
2,626,754	+				-0.5
2,626,754	+				+0.6
2,626,754	+				+0.4
2,626,754	+				+0.8
2,626,754	+				+0.6
2,626,754	+				-0.2
2,626,754	+				+1.1
2,626,755	-				-0.0
2,626,755	-				-1.0
2,626,755	-				+0.1
2,626,755	-				+2.2
2,626,755	-				-1.2
2,626,755	-				+1.8
2,626,755	-				+0.3
2,626,755	-				+0.3
2,626,755	-				+1.0
2,626,755	-				+0.6
2,626,967	+		IAI47_12465	0.18	+0.4
2,626,967	+		IAI47_12465	0.18	+1.4
2,626,968	-		IAI47_12465	0.18	-1.2
2,626,983	-		IAI47_12465	0.19	-1.2
2,627,047	-		IAI47_12465	0.22	+0.9
2,627,102	+		IAI47_12465	0.25	-0.3
2,627,102	+		IAI47_12465	0.25	+0.5
2,627,102	+		IAI47_12465	0.25	-0.5
2,627,102	+		IAI47_12465	0.25	+0.1
2,627,102	+		IAI47_12465	0.25	-0.7
2,627,103	-		IAI47_12465	0.25	+1.9
2,627,103	-		IAI47_12465	0.25	-0.8
2,627,103	-		IAI47_12465	0.25	-0.3
2,627,103	-		IAI47_12465	0.25	+0.1
2,627,159	-		IAI47_12465	0.28	-0.6
2,627,174	+		IAI47_12465	0.29	-0.6
2,627,174	+		IAI47_12465	0.29	-0.2
2,627,175	-		IAI47_12465	0.29	-1.0
2,627,183	+		IAI47_12465	0.30	+0.6
2,627,191	+		IAI47_12465	0.30	+0.1
2,627,200	+		IAI47_12465	0.30	+1.0
2,627,201	-		IAI47_12465	0.31	-1.1
2,627,276	+		IAI47_12465	0.35	+0.3
2,627,276	+		IAI47_12465	0.35	+0.8
2,627,352	-		IAI47_12465	0.39	-0.2
2,627,352	-		IAI47_12465	0.39	+0.6
2,627,413	+		IAI47_12465	0.42	+1.1
2,627,467	-		IAI47_12465	0.45	-0.8
2,627,467	-		IAI47_12465	0.45	+1.1
2,627,475	+		IAI47_12465	0.45	+0.5
2,627,475	+		IAI47_12465	0.45	+0.1
2,627,475	+		IAI47_12465	0.45	-0.4
2,627,475	+		IAI47_12465	0.45	+0.6
2,627,475	+		IAI47_12465	0.45	+0.6
2,627,476	-		IAI47_12465	0.46	-1.0
2,627,476	-		IAI47_12465	0.46	-0.8
2,627,476	-		IAI47_12465	0.46	+2.1
2,627,510	+		IAI47_12465	0.47	+0.0
2,627,510	+		IAI47_12465	0.47	-0.6
2,627,510	+		IAI47_12465	0.47	-0.2
2,627,510	+		IAI47_12465	0.47	+0.4
2,627,511	-		IAI47_12465	0.47	-1.8
2,627,541	-		IAI47_12465	0.49	+0.2
2,627,541	-		IAI47_12465	0.49	-0.2
2,627,541	-		IAI47_12465	0.49	-0.0
2,627,563	+		IAI47_12465	0.50	-0.2
2,627,563	+		IAI47_12465	0.50	-0.2
2,627,564	-		IAI47_12465	0.50	+0.7