Strain Fitness in Pantoea sp. MT58 around IAI47_11900

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
2,517,919	+		IAI47_11895	0.74	+0.3
2,517,919	+		IAI47_11895	0.74	-0.3
2,517,920	-		IAI47_11895	0.74	+0.4
2,517,960	+		IAI47_11895	0.78	+0.1
2,517,960	+		IAI47_11895	0.78	+0.3
2,517,961	-		IAI47_11895	0.78	+1.0
2,518,040	+		IAI47_11895	0.86	-0.6
2,518,041	-		IAI47_11895	0.86	-0.6
2,518,063	+		IAI47_11895	0.89	-0.7
2,518,064	-		IAI47_11895	0.89	+0.0
2,518,064	-		IAI47_11895	0.89	-0.2
2,518,064	-		IAI47_11895	0.89	+0.0
2,518,148	+				+1.6
2,518,149	-				+1.2
2,518,164	-				-0.8
2,518,178	+				-0.5
2,518,178	+				+0.7
2,518,179	-				-0.4
2,518,223	-				+0.3
2,518,227	+				-1.1
2,518,227	+				-2.3
2,518,227	+				-0.8
2,518,227	+				+0.6
2,518,227	+				+0.7
2,518,227	+				-2.2
2,518,228	-				+0.6
2,518,286	-				+0.2
2,518,313	+				+1.3
2,518,314	-				-0.2
2,518,323	-				-0.3
2,518,323	-				-0.3
2,518,399	-				+0.7
2,518,403	-				+0.7
2,518,465	+				-1.8
2,518,466	-				-0.3
2,518,472	+				+1.3
2,518,473	-				+0.2
2,518,484	+				-0.7
2,518,484	+				+0.7
2,518,484	+				-0.3
2,518,484	+				-0.3
2,518,484	+				+0.7
2,518,485	-				-0.1
2,518,485	-				-1.0
2,518,486	+				+0.3
2,518,538	-				+1.7
2,518,538	-				-2.4
2,518,541	+				+1.4
2,518,542	-				+0.7
2,518,577	-				+0.7
2,518,592	-				+0.9
2,518,646	-				-1.0
2,518,664	-				+0.3
2,518,665	+				-0.5
2,518,671	+				+1.6
2,518,671	+				-1.0
2,518,671	+				+0.2
2,518,671	+				+0.1
2,518,672	-				+0.7
2,518,672	-				-0.2
2,518,683	-				+0.0
2,518,683	-				-0.3
2,518,713	+				-1.5
2,518,714	-				+0.3
2,518,714	-				-0.3
2,518,752	+				+0.2
2,518,804	+				-0.5
2,518,804	+				-0.8
2,518,805	-				-1.7
2,518,880	-				-1.4
2,518,880	-				-0.2
2,518,880	-				+1.3
2,518,900	+				-1.8
2,518,900	+				-0.8
2,518,900	+				+0.2
2,518,901	-				-0.3
2,520,197	-				-0.7
2,520,200	-				-1.3
2,520,241	+				-2.1
2,520,241	+				+0.3
2,520,242	-				-1.4
2,520,242	-				+0.7
2,520,243	+				-0.8
2,520,243	+				+0.2
2,520,244	-				-0.1
2,520,244	-				+0.5
2,520,470	+		IAI47_11905	0.33	+0.0
2,520,470	+		IAI47_11905	0.33	+0.9
2,520,470	+		IAI47_11905	0.33	-0.6
2,520,470	+		IAI47_11905	0.33	-0.8
2,520,471	-		IAI47_11905	0.34	+0.3
2,520,471	-		IAI47_11905	0.34	-1.6
2,520,578	+		IAI47_11905	0.50	-1.6
2,520,578	+		IAI47_11905	0.50	-1.6
2,520,578	+		IAI47_11905	0.50	-1.4
2,520,578	+		IAI47_11905	0.50	+0.7
2,520,578	+		IAI47_11905	0.50	+0.4
2,520,578	+		IAI47_11905	0.50	+0.0
2,520,579	-		IAI47_11905	0.50	+0.4
2,520,579	-		IAI47_11905	0.50	+0.4
2,520,579	-		IAI47_11905	0.50	-1.3
2,520,579	-		IAI47_11905	0.50	-1.3
2,520,579	-		IAI47_11905	0.50	+0.5
2,520,579	-		IAI47_11905	0.50	-2.1
2,520,579	-		IAI47_11905	0.50	-1.4
2,520,579	-		IAI47_11905	0.50	+0.2
2,520,579	-		IAI47_11905	0.50	-1.4
2,520,581	+		IAI47_11905	0.50	+0.1
2,520,581	+		IAI47_11905	0.50	+1.7
2,520,581	+		IAI47_11905	0.50	+0.2
2,520,581	+		IAI47_11905	0.50	+0.7
2,520,581	+		IAI47_11905	0.50	+0.6
2,520,581	+		IAI47_11905	0.50	-1.4
2,520,581	+		IAI47_11905	0.50	+1.7
2,520,581	+		IAI47_11905	0.50	-0.3
2,520,581	+		IAI47_11905	0.50	-0.8
2,520,581	+		IAI47_11905	0.50	-1.5
2,520,582	-		IAI47_11905	0.50	-1.3
2,520,582	-		IAI47_11905	0.50	-0.7
2,520,582	-		IAI47_11905	0.50	+0.7
2,520,582	-		IAI47_11905	0.50	-1.5
2,520,582	-		IAI47_11905	0.50	+0.3
2,520,582	-		IAI47_11905	0.50	+0.5
2,520,582	-		IAI47_11905	0.50	+0.3
2,520,582	-		IAI47_11905	0.50	-0.1
2,520,582	-		IAI47_11905	0.50	+0.4
2,520,582	-		IAI47_11905	0.50	+0.2
2,520,582	-		IAI47_11905	0.50	-3.6
2,520,591	+		IAI47_11905	0.51	+0.5
2,520,591	+		IAI47_11905	0.51	-2.3
2,520,592	-		IAI47_11905	0.52	+0.7
2,520,592	-		IAI47_11905	0.52	+0.2
2,520,592	-		IAI47_11905	0.52	-1.0
2,520,592	-		IAI47_11905	0.52	+0.4
2,520,592	-		IAI47_11905	0.52	-1.4
2,520,592	-		IAI47_11905	0.52	-0.4
2,520,646	+		IAI47_11905	0.60	-1.9
2,520,647	-		IAI47_11905	0.60	+0.7
2,520,647	-		IAI47_11905	0.60	-1.8
2,520,675	+		IAI47_11905	0.64	-0.0
2,520,675	+		IAI47_11905	0.64	+0.6
2,520,734	-		IAI47_11905	0.73	-1.6
2,520,770	+		IAI47_11905	0.78	+0.7
2,520,770	+		IAI47_11905	0.78	+0.4
2,520,770	+		IAI47_11905	0.78	+0.3
2,520,770	+		IAI47_11905	0.78	+0.1
2,520,770	+		IAI47_11905	0.78	+0.3
2,520,771	-		IAI47_11905	0.78	-0.6
2,520,771	-		IAI47_11905	0.78	-0.9
2,520,771	-		IAI47_11905	0.78	-0.7
2,520,771	-		IAI47_11905	0.78	-0.1
2,520,771	-		IAI47_11905	0.78	+0.4
2,520,771	-		IAI47_11905	0.78	+1.2
2,520,771	-		IAI47_11905	0.78	-0.1
2,520,771	-		IAI47_11905	0.78	-1.8
2,520,771	-		IAI47_11905	0.78	+0.2
2,520,771	-		IAI47_11905	0.78	-2.7
2,520,771	-		IAI47_11905	0.78	-0.4
2,520,771	-		IAI47_11905	0.78	-0.3
2,520,771	-		IAI47_11905	0.78	+1.4
2,520,771	-		IAI47_11905	0.78	+0.2
2,520,793	-		IAI47_11905	0.82	-0.3
2,520,811	+		IAI47_11905	0.84	+1.0
2,520,828	+		IAI47_11905	0.87	-1.3
2,520,828	+		IAI47_11905	0.87	+0.6
2,520,829	-		IAI47_11905	0.87	-1.6
2,520,834	+		IAI47_11905	0.88	-0.3
2,520,835	-		IAI47_11905	0.88	-1.2
2,520,835	-		IAI47_11905	0.88	-0.3
2,520,857	+				-0.3
2,520,857	+				-2.6
2,520,857	+				-0.9
2,520,857	+				+0.2
2,520,858	-				-0.8
2,520,858	-				+0.7
2,520,858	-				-2.0
2,520,904	+				-0.0
2,520,905	-				+1.2
2,520,905	-				+0.1
2,520,905	-				+0.7
2,520,905	-				-1.3
2,520,929	+				+0.5
2,520,930	-				-0.5
2,520,966	+				+1.3
2,520,967	-				-0.1
2,520,978	+				-1.1
2,520,979	-				-2.6
2,520,979	-				-0.3
2,521,022	+		IAI47_11910	0.13	+0.1
2,521,022	+		IAI47_11910	0.13	-0.8
2,521,023	-		IAI47_11910	0.13	+0.3
2,521,023	-		IAI47_11910	0.13	-0.4
2,521,036	-		IAI47_11910	0.16	+0.5
2,521,117	+		IAI47_11910	0.33	-1.2
2,521,117	+		IAI47_11910	0.33	-1.2
2,521,117	+		IAI47_11910	0.33	+0.2
2,521,117	+		IAI47_11910	0.33	+0.3
2,521,118	-		IAI47_11910	0.33	-0.6
2,521,118	-		IAI47_11910	0.33	+0.3