Strain Fitness in Pantoea sp. MT58 around IAI47_11820

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
2,506,754	+		IAI47_11815	0.18	-0.5
2,506,754	+		IAI47_11815	0.18	+0.1
2,506,786	+		IAI47_11815	0.22	+0.6
2,506,988	+		IAI47_11815	0.43	-1.1
2,506,988	+		IAI47_11815	0.43	-2.7
2,506,988	+		IAI47_11815	0.43	-0.5
2,506,989	-		IAI47_11815	0.43	-0.6
2,506,989	-		IAI47_11815	0.43	+0.6
2,506,989	-		IAI47_11815	0.43	-0.4
2,506,990	+		IAI47_11815	0.43	-1.0
2,506,990	+		IAI47_11815	0.43	-0.3
2,506,990	+		IAI47_11815	0.43	+0.4
2,506,991	-		IAI47_11815	0.44	-0.2
2,506,991	-		IAI47_11815	0.44	-0.9
2,506,991	-		IAI47_11815	0.44	-0.1
2,507,001	+		IAI47_11815	0.45	-0.9
2,507,001	+		IAI47_11815	0.45	+0.2
2,507,002	-		IAI47_11815	0.45	+0.7
2,507,002	-		IAI47_11815	0.45	-0.9
2,507,002	-		IAI47_11815	0.45	-0.4
2,507,039	+		IAI47_11815	0.49	+1.1
2,507,039	+		IAI47_11815	0.49	-1.4
2,507,040	-		IAI47_11815	0.49	+0.3
2,507,068	+		IAI47_11815	0.52	-1.9
2,507,068	-		IAI47_11815	0.52	+1.5
2,507,069	-		IAI47_11815	0.52	-0.9
2,507,069	-		IAI47_11815	0.52	+0.9
2,507,069	-		IAI47_11815	0.52	+0.5
2,507,069	-		IAI47_11815	0.52	+0.5
2,507,069	-		IAI47_11815	0.52	-0.5
2,507,128	+		IAI47_11815	0.58	-0.1
2,507,128	+		IAI47_11815	0.58	-0.3
2,507,129	-		IAI47_11815	0.58	+0.5
2,507,129	-		IAI47_11815	0.58	+0.1
2,507,132	+		IAI47_11815	0.58	-1.9
2,507,132	+		IAI47_11815	0.58	+0.5
2,507,132	+		IAI47_11815	0.58	+0.7
2,507,132	+		IAI47_11815	0.58	+1.4
2,507,132	+		IAI47_11815	0.58	-0.7
2,507,133	-		IAI47_11815	0.59	-0.4
2,507,133	-		IAI47_11815	0.59	+0.1
2,507,133	-		IAI47_11815	0.59	-0.4
2,507,133	-		IAI47_11815	0.59	+0.3
2,507,133	-		IAI47_11815	0.59	-1.3
2,507,171	+		IAI47_11815	0.63	+0.6
2,507,315	+		IAI47_11815	0.78	+0.5
2,507,318	+		IAI47_11815	0.78	+0.4
2,507,318	+		IAI47_11815	0.78	+1.1
2,507,318	+		IAI47_11815	0.78	+2.2
2,507,318	+		IAI47_11815	0.78	-2.4
2,507,318	+		IAI47_11815	0.78	-0.0
2,507,318	+		IAI47_11815	0.78	-0.9
2,507,319	-		IAI47_11815	0.78	+0.5
2,507,319	-		IAI47_11815	0.78	+0.1
2,507,319	-		IAI47_11815	0.78	-1.4
2,507,319	-		IAI47_11815	0.78	-0.3
2,507,319	-		IAI47_11815	0.78	+0.7
2,507,319	-		IAI47_11815	0.78	+1.3
2,507,353	+		IAI47_11815	0.82	+0.6
2,507,353	+		IAI47_11815	0.82	-0.0
2,507,354	-		IAI47_11815	0.82	-0.6
2,507,399	+		IAI47_11815	0.87	+1.5
2,507,400	-		IAI47_11815	0.87	-0.3
2,507,429	+				-0.5
2,507,429	+				-0.0
2,507,429	+				-0.6
2,507,430	-				+0.1
2,507,504	+				+1.5
2,507,523	+				-1.3
2,507,523	+				-0.1
2,507,524	-				-0.7
2,507,524	-				-0.1
2,507,527	-				+1.7
2,507,527	-				+1.1
2,507,527	-				+0.7
2,507,527	-				+0.4
2,507,541	+				+0.1
2,507,576	+				-0.8
2,507,577	-				-2.7
2,507,639	+				+0.0
2,507,676	+				-0.4
2,507,676	+				-0.4
2,507,676	+				-0.5
2,507,753	+				+0.7
2,507,753	+				+0.3
2,507,753	+				-0.8
2,507,753	+				-0.7
2,507,753	+				+0.2
2,507,753	+				-1.1
2,507,753	+				-1.3
2,507,754	-				-0.8
2,507,754	-				-0.6
2,507,754	-				+0.4
2,507,754	-				+1.3
2,507,754	-				-0.4
2,507,754	-				-0.4
2,507,754	-				+0.4
2,507,754	-				-1.3
2,507,754	-				-0.3
2,507,754	-				-0.0
2,507,756	+				-1.4
2,507,756	+				-0.4
2,507,756	+				-1.6
2,507,756	+				+0.4
2,507,756	+				-1.5
2,507,756	+				+0.6
2,507,757	-				+1.5
2,507,757	-				-0.3
2,507,757	-				-0.1
2,507,826	+		IAI47_11820	0.13	+0.1
2,507,827	-		IAI47_11820	0.13	+0.7
2,507,827	-		IAI47_11820	0.13	-0.5
2,507,827	-		IAI47_11820	0.13	-0.7
2,507,830	+		IAI47_11820	0.13	-0.3
2,507,831	-		IAI47_11820	0.13	-0.8
2,507,831	-		IAI47_11820	0.13	-2.3
2,507,831	-		IAI47_11820	0.13	-0.6
2,507,831	-		IAI47_11820	0.13	+0.4
2,507,831	-		IAI47_11820	0.13	-0.1
2,507,921	+		IAI47_11820	0.23	-1.3
2,507,921	+		IAI47_11820	0.23	+0.7
2,507,921	+		IAI47_11820	0.23	-1.1
2,507,922	-		IAI47_11820	0.23	+0.3
2,507,922	-		IAI47_11820	0.23	-0.0
2,507,922	-		IAI47_11820	0.23	-1.2
2,507,922	-		IAI47_11820	0.23	-0.6
2,507,922	-		IAI47_11820	0.23	+0.3
2,507,922	-		IAI47_11820	0.23	+0.0
2,507,922	-		IAI47_11820	0.23	+1.2
2,507,922	-		IAI47_11820	0.23	-0.5
2,507,922	-		IAI47_11820	0.23	-0.3
2,507,923	+		IAI47_11820	0.23	-0.0
2,508,011	+		IAI47_11820	0.32	+1.1
2,508,011	+		IAI47_11820	0.32	-0.3
2,508,032	-		IAI47_11820	0.34	-0.8
2,508,084	+		IAI47_11820	0.40	+0.3
2,508,084	+		IAI47_11820	0.40	+0.2
2,508,084	+		IAI47_11820	0.40	-2.1
2,508,084	+		IAI47_11820	0.40	-3.2
2,508,084	+		IAI47_11820	0.40	+1.1
2,508,085	-		IAI47_11820	0.40	+0.7
2,508,085	-		IAI47_11820	0.40	+0.5
2,508,104	-		IAI47_11820	0.42	-0.3
2,508,115	+		IAI47_11820	0.43	-0.4
2,508,162	+		IAI47_11820	0.48	-0.8
2,508,162	+		IAI47_11820	0.48	-1.6
2,508,162	+		IAI47_11820	0.48	-0.4
2,508,162	+		IAI47_11820	0.48	-0.8
2,508,162	+		IAI47_11820	0.48	-0.7
2,508,268	-		IAI47_11820	0.59	-0.8
2,508,268	-		IAI47_11820	0.59	+1.0
2,508,302	-		IAI47_11820	0.62	-0.0
2,508,316	-		IAI47_11820	0.64	+0.2
2,508,335	-		IAI47_11820	0.66	+0.5
2,508,380	+		IAI47_11820	0.71	+0.0
2,508,380	+		IAI47_11820	0.71	-0.1
2,508,383	+		IAI47_11820	0.71	-0.3
2,508,384	-		IAI47_11820	0.71	+0.8
2,508,384	-		IAI47_11820	0.71	-0.6
2,508,384	-		IAI47_11820	0.71	+0.0
2,508,384	-		IAI47_11820	0.71	+0.7
2,508,384	-		IAI47_11820	0.71	-1.4
2,508,384	-		IAI47_11820	0.71	-0.7
2,508,384	-		IAI47_11820	0.71	-0.5
2,508,426	+		IAI47_11820	0.75	-2.1
2,508,433	+		IAI47_11820	0.76	+0.7
2,508,446	+		IAI47_11820	0.77	-0.8
2,508,447	-		IAI47_11820	0.78	-0.8
2,508,447	-		IAI47_11820	0.78	-0.6
2,508,520	+		IAI47_11820	0.85	-0.4
2,508,599	+				+1.3
2,508,599	+				+1.3
2,508,599	+				+0.5
2,508,599	+				-1.7
2,508,600	-				-0.1
2,508,600	-				+0.7
2,508,600	-				+0.3
2,508,600	-				-0.1
2,508,604	+				-0.3
2,508,604	+				+0.1
2,508,604	+				+0.3
2,508,605	-				-2.0
2,508,623	+				+0.2
2,508,639	+				-0.1
2,508,639	+				-1.3
2,508,639	+				+1.5
2,508,640	-				-0.1
2,508,659	+				+1.3
2,508,660	-				+1.5
2,508,660	-				+0.1
2,508,680	+				-0.0
2,508,680	+				-1.7
2,508,680	+				+4.2
2,508,680	+				+0.4
2,508,681	-				+0.3
2,508,681	-				+0.2
2,508,681	-				+0.3
2,508,681	-				+0.7
2,508,685	+				-1.6
2,508,685	+				-0.6
2,508,685	+				+0.3
2,508,686	-				+1.4
2,508,710	-				-0.9
2,508,745	-		IAI47_11825	0.12	+0.7
2,508,754	+		IAI47_11825	0.13	-0.8
2,508,754	+		IAI47_11825	0.13	+0.7
2,508,775	+		IAI47_11825	0.16	-0.3
2,508,779	+		IAI47_11825	0.17	-2.1
2,508,779	+		IAI47_11825	0.17	+0.0
2,508,779	+		IAI47_11825	0.17	-1.0
2,508,779	+		IAI47_11825	0.17	-0.6
2,508,779	+		IAI47_11825	0.17	-1.6
2,508,779	+		IAI47_11825	0.17	-0.3
2,508,779	+		IAI47_11825	0.17	-0.7
2,508,779	+		IAI47_11825	0.17	-0.3
2,508,780	-		IAI47_11825	0.17	-2.1
2,508,780	-		IAI47_11825	0.17	+1.0
2,508,780	-		IAI47_11825	0.17	-0.4
2,508,780	-		IAI47_11825	0.17	+0.0
2,508,780	-		IAI47_11825	0.17	-0.4
2,508,780	-		IAI47_11825	0.17	-0.3
2,508,847	+		IAI47_11825	0.28	+2.1
2,508,848	-		IAI47_11825	0.28	+1.2
2,508,865	+		IAI47_11825	0.31	-0.3
2,508,866	-		IAI47_11825	0.31	+0.7
2,508,866	-		IAI47_11825	0.31	-1.1
2,508,917	+		IAI47_11825	0.39	+0.8
2,508,918	-		IAI47_11825	0.39	-1.3
2,508,918	-		IAI47_11825	0.39	+2.0
2,508,920	-		IAI47_11825	0.39	-0.7
2,508,926	-		IAI47_11825	0.40	+0.2
2,508,926	-		IAI47_11825	0.40	+0.7
2,508,926	-		IAI47_11825	0.40	-0.5
2,508,926	-		IAI47_11825	0.40	+0.2
2,508,926	-		IAI47_11825	0.40	-0.8
2,508,926	-		IAI47_11825	0.40	-2.1
2,508,926	-		IAI47_11825	0.40	-0.8
2,508,926	-		IAI47_11825	0.40	-0.3
2,508,926	-		IAI47_11825	0.40	-0.5
2,508,926	-		IAI47_11825	0.40	-0.2
2,508,944	+		IAI47_11825	0.43	+0.9
2,508,945	-		IAI47_11825	0.43	-1.8
2,509,006	+		IAI47_11825	0.53	-0.3
2,509,006	+		IAI47_11825	0.53	+0.2
2,509,034	+		IAI47_11825	0.57	-0.7
2,509,034	+		IAI47_11825	0.57	+0.7
2,509,035	-		IAI47_11825	0.58	+0.2
2,509,035	-		IAI47_11825	0.58	-0.1
2,509,058	+		IAI47_11825	0.61	-0.6
2,509,058	+		IAI47_11825	0.61	-0.3
2,509,059	-		IAI47_11825	0.61	+1.1
2,509,059	-		IAI47_11825	0.61	+1.1
2,509,103	+		IAI47_11825	0.68	-1.0
2,509,103	+		IAI47_11825	0.68	-0.3
2,509,103	+		IAI47_11825	0.68	-0.3
2,509,104	-		IAI47_11825	0.69	+2.3
2,509,104	-		IAI47_11825	0.69	+0.7
2,509,135	+		IAI47_11825	0.73	+0.1
2,509,136	-		IAI47_11825	0.74	-0.4
2,509,203	+		IAI47_11825	0.84	-0.0
2,509,204	-		IAI47_11825	0.84	-0.8
2,509,204	-		IAI47_11825	0.84	+0.7
2,509,204	-		IAI47_11825	0.84	+0.0
2,509,204	-		IAI47_11825	0.84	-0.8
2,509,223	+		IAI47_11825	0.87	+0.3
2,509,223	+		IAI47_11825	0.87	-0.4
2,509,267	-				+0.0
2,509,278	+				-0.7
2,509,278	+				-0.1
2,509,279	-				-0.5
2,509,279	-				-0.3
2,509,280	+				+1.1
2,509,280	+				+0.5
2,509,280	+				-0.3
2,509,280	+				+1.1
2,509,280	+				+0.2
2,509,280	+				+0.1
2,509,280	+				-2.3
2,509,281	-				-1.8
2,509,281	-				-0.3
2,509,281	-				+1.1
2,509,281	-				+2.0
2,509,281	-				+1.2
2,509,314	+				-0.3
2,509,314	+				+2.2
2,509,314	+				+0.7
2,509,314	+				+0.7
2,509,315	-				-0.4
2,509,333	+				-3.0
2,509,333	+				+0.6
2,509,333	+				-1.2
2,509,333	+				+0.5
2,509,334	-				+0.3
2,509,334	-				+0.8
2,509,334	-				+0.5
2,509,334	-				+0.3
2,509,334	-				-0.8
2,509,334	-				+0.6
2,509,334	-				+0.2
2,509,339	-				+2.1
2,509,339	-				-0.2
2,509,339	-				-0.1
2,509,339	-				-0.8
2,509,370	+				-2.0
2,509,370	+				+0.4
2,509,371	-				+0.4
2,509,371	-				+0.1
2,509,375	+				-1.8
2,509,375	+				-0.3
2,509,376	-				+0.3
2,509,384	+				-0.7
2,509,398	+				+0.2
2,509,398	+				-0.6
2,509,438	-				-0.7
2,509,462	+				+1.4
2,509,463	-				-0.6
2,509,463	-				-0.8
2,509,489	+				-1.6
2,509,489	+				-1.8
2,509,489	+				-2.6
2,509,490	-				-0.6
2,509,490	-				-1.7
2,509,490	-				+0.3
2,509,490	-				-1.8
2,509,490	-				+0.0
2,509,538	-				-0.5
2,509,570	-		IAI47_11830	0.11	-1.9
2,509,639	+		IAI47_11830	0.19	-0.6