Strain Fitness in Pantoea sp. MT58 around IAI47_11235

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
2,374,909	-		IAI47_11230	0.39	+0.9
2,374,909	-		IAI47_11230	0.39	-0.8
2,374,950	+		IAI47_11230	0.42	-0.4
2,374,950	+		IAI47_11230	0.42	-0.8
2,374,950	+		IAI47_11230	0.42	+0.7
2,374,950	+		IAI47_11230	0.42	-1.8
2,374,950	+		IAI47_11230	0.42	-1.6
2,374,951	-		IAI47_11230	0.42	+1.2
2,374,951	-		IAI47_11230	0.42	+0.2
2,374,979	-		IAI47_11230	0.44	+0.2
2,374,979	-		IAI47_11230	0.44	-0.5
2,375,019	+		IAI47_11230	0.47	-0.8
2,375,020	-		IAI47_11230	0.47	-0.3
2,375,020	-		IAI47_11230	0.47	+0.7
2,375,020	-		IAI47_11230	0.47	+0.2
2,375,023	+		IAI47_11230	0.47	-0.1
2,375,023	+		IAI47_11230	0.47	-1.1
2,375,023	+		IAI47_11230	0.47	-0.3
2,375,023	+		IAI47_11230	0.47	+0.7
2,375,023	+		IAI47_11230	0.47	+1.0
2,375,023	+		IAI47_11230	0.47	+0.0
2,375,023	+		IAI47_11230	0.47	-0.6
2,375,023	+		IAI47_11230	0.47	+0.3
2,375,024	-		IAI47_11230	0.47	+0.2
2,375,024	-		IAI47_11230	0.47	-0.5
2,375,024	-		IAI47_11230	0.47	-0.7
2,375,024	-		IAI47_11230	0.47	-0.3
2,375,046	+		IAI47_11230	0.49	-0.8
2,375,047	-		IAI47_11230	0.49	+1.3
2,375,100	+		IAI47_11230	0.53	+0.0
2,375,100	+		IAI47_11230	0.53	+0.4
2,375,100	+		IAI47_11230	0.53	+0.7
2,375,101	-		IAI47_11230	0.53	-0.5
2,375,104	+		IAI47_11230	0.53	+1.2
2,375,104	+		IAI47_11230	0.53	+0.3
2,375,137	+		IAI47_11230	0.55	+1.0
2,375,138	-		IAI47_11230	0.55	-2.7
2,375,376	+		IAI47_11230	0.72	-0.7
2,375,433	+		IAI47_11230	0.76	+0.9
2,375,433	+		IAI47_11230	0.76	+1.2
2,375,466	+		IAI47_11230	0.78	+1.1
2,375,467	-		IAI47_11230	0.78	+0.0
2,375,578	+		IAI47_11230	0.86	-0.6
2,375,578	+		IAI47_11230	0.86	+1.1
2,375,579	-		IAI47_11230	0.86	-1.3
2,375,579	-		IAI47_11230	0.86	-2.4
2,375,579	-		IAI47_11230	0.86	-0.8
2,375,579	-		IAI47_11230	0.86	+0.3
2,375,606	+		IAI47_11230	0.88	-0.3
2,375,606	+		IAI47_11230	0.88	-0.5
2,375,683	+				-0.3
2,375,690	+				+0.2
2,375,691	-				+0.5
2,375,739	+				+1.0
2,375,739	+				+0.5
2,375,739	+				-0.7
2,375,740	-				-0.5
2,375,740	-				+1.1
2,375,773	+				-1.4
2,375,774	-				+0.2
2,375,774	-				+0.7
2,375,774	-				+1.2
2,375,774	-				+1.1
2,375,774	-				+0.5
2,375,792	-				-0.3
2,375,792	-				-0.1
2,375,823	-				+1.0
2,375,823	-				+0.3
2,375,973	+		IAI47_11235	0.17	+0.1
2,375,973	+		IAI47_11235	0.17	-0.7
2,375,973	+		IAI47_11235	0.17	-2.8
2,375,973	+		IAI47_11235	0.17	-1.8
2,375,973	+		IAI47_11235	0.17	-1.3
2,375,974	-		IAI47_11235	0.17	-0.6
2,375,974	-		IAI47_11235	0.17	-0.0
2,375,974	-		IAI47_11235	0.17	-0.6
2,376,052	-		IAI47_11235	0.28	-0.8
2,376,052	-		IAI47_11235	0.28	-0.5
2,376,073	+		IAI47_11235	0.31	-0.3
2,376,074	-		IAI47_11235	0.32	-0.7
2,376,074	-		IAI47_11235	0.32	-1.8
2,376,074	-		IAI47_11235	0.32	+0.4
2,376,076	+		IAI47_11235	0.32	-0.7
2,376,076	+		IAI47_11235	0.32	+0.1
2,376,076	+		IAI47_11235	0.32	-0.4
2,376,076	+		IAI47_11235	0.32	+1.5
2,376,077	-		IAI47_11235	0.32	-1.4
2,376,077	-		IAI47_11235	0.32	-1.3
2,376,077	-		IAI47_11235	0.32	-1.5
2,376,077	-		IAI47_11235	0.32	-1.1
2,376,116	+		IAI47_11235	0.38	-0.9
2,376,116	+		IAI47_11235	0.38	+0.4
2,376,116	+		IAI47_11235	0.38	-0.7
2,376,116	+		IAI47_11235	0.38	+0.7
2,376,134	+		IAI47_11235	0.40	-0.8
2,376,134	+		IAI47_11235	0.40	+0.2
2,376,135	-		IAI47_11235	0.41	-3.0
2,376,135	-		IAI47_11235	0.41	-0.6
2,376,135	-		IAI47_11235	0.41	+1.7
2,376,138	+		IAI47_11235	0.41	-0.9
2,376,139	-		IAI47_11235	0.41	-0.4
2,376,139	-		IAI47_11235	0.41	+0.3
2,376,188	+		IAI47_11235	0.48	-0.8
2,376,188	+		IAI47_11235	0.48	+0.0
2,376,188	+		IAI47_11235	0.48	-1.3
2,376,188	+		IAI47_11235	0.48	+0.7
2,376,188	+		IAI47_11235	0.48	-1.2
2,376,188	+		IAI47_11235	0.48	+0.3
2,376,188	+		IAI47_11235	0.48	-1.4
2,376,189	-		IAI47_11235	0.49	+0.3
2,376,189	-		IAI47_11235	0.49	+0.7
2,376,189	-		IAI47_11235	0.49	-0.6
2,376,189	-		IAI47_11235	0.49	+1.7
2,376,189	-		IAI47_11235	0.49	+0.7
2,376,189	-		IAI47_11235	0.49	-0.6
2,376,467	+		IAI47_11235	0.90	-1.1
2,376,468	-				-1.4
2,376,499	+				-1.2
2,376,499	+				+1.2
2,376,499	+				-0.1
2,376,499	+				-1.3
2,376,500	-				-1.3
2,376,512	+				-1.8
2,376,581	-				+0.7
2,376,581	-				+0.9
2,376,581	-				-0.6
2,376,617	+				-0.8
2,376,628	+				-0.8
2,376,628	+				+0.0
2,376,628	+				+1.5
2,376,628	+				-1.1
2,376,629	-				-1.8
2,376,629	-				+0.4
2,376,633	+				-0.7
2,376,634	-				-0.8
2,376,634	-				+0.7
2,376,638	-				-1.0
2,376,689	-				+0.7
2,376,751	+				+1.9
2,376,751	+				+0.5
2,376,751	+				+0.5
2,376,751	+				-0.1
2,376,752	-				-0.1
2,376,752	-				-0.7
2,376,752	-				+0.4
2,376,752	-				+0.3
2,376,770	+				+0.3
2,376,770	+				+0.3
2,376,770	+				+1.3
2,376,771	-				+1.0
2,376,771	-				+0.3
2,376,782	+				+1.5
2,376,782	+				+0.1
2,376,783	-				-0.6
2,376,803	-		IAI47_11240	0.18	+0.1
2,376,833	+		IAI47_11240	0.31	-0.5
2,376,833	+		IAI47_11240	0.31	-1.8
2,376,833	+		IAI47_11240	0.31	+0.4
2,376,833	+		IAI47_11240	0.31	-0.1
2,376,834	-		IAI47_11240	0.31	-0.1
2,376,884	+		IAI47_11240	0.53	-2.3
2,376,884	+		IAI47_11240	0.53	+0.2
2,376,884	+		IAI47_11240	0.53	-0.3
2,376,884	+		IAI47_11240	0.53	+0.9
2,376,884	+		IAI47_11240	0.53	+1.2
2,376,884	+		IAI47_11240	0.53	-0.3
2,376,885	-		IAI47_11240	0.53	+0.9
2,376,886	+		IAI47_11240	0.54	-0.5
2,376,886	+		IAI47_11240	0.54	+0.5
2,376,886	+		IAI47_11240	0.54	+0.1
2,376,886	+		IAI47_11240	0.54	-0.4
2,376,886	+		IAI47_11240	0.54	-0.8
2,376,886	+		IAI47_11240	0.54	-0.3
2,376,887	-		IAI47_11240	0.54	+0.7
2,376,887	-		IAI47_11240	0.54	+0.5
2,376,905	+		IAI47_11240	0.62	+1.1
2,376,905	-		IAI47_11240	0.62	+0.1
2,376,906	-		IAI47_11240	0.62	+1.5
2,376,906	-		IAI47_11240	0.62	+1.2
2,376,906	-		IAI47_11240	0.62	+0.7
2,376,919	+		IAI47_11240	0.68	+1.3
2,376,919	+		IAI47_11240	0.68	-1.2
2,376,919	+		IAI47_11240	0.68	-0.3
2,376,919	+		IAI47_11240	0.68	-0.3
2,376,919	+		IAI47_11240	0.68	+0.1
2,376,919	+		IAI47_11240	0.68	+0.2
2,376,920	-		IAI47_11240	0.68	-0.3
2,376,923	+		IAI47_11240	0.70	-0.3
2,376,923	+		IAI47_11240	0.70	-0.0
2,376,924	-		IAI47_11240	0.70	-0.1
2,376,924	-		IAI47_11240	0.70	-1.3
2,376,924	-		IAI47_11240	0.70	-0.3
2,376,924	-		IAI47_11240	0.70	+0.4
2,376,924	-		IAI47_11240	0.70	-0.1
2,376,981	-				-0.7
2,376,985	+				-0.3
2,376,985	+				+0.3
2,376,985	+				-0.1
2,376,986	-				+0.5
2,376,992	+				+0.7
2,376,993	-				-0.2
2,377,022	-				+0.7
2,377,069	+				+1.7
2,377,074	-				-1.1
2,377,142	+				-0.8
2,377,142	+				-0.5
2,377,143	-				-0.1
2,377,143	-				+2.1
2,377,143	-				+0.0
2,377,143	-				-0.5
2,377,144	+				+0.0
2,377,145	-				-1.2
2,377,145	-				+0.4
2,377,155	+				+0.3
2,377,156	-				+0.3
2,377,163	+				+0.3
2,377,163	+				+0.3
2,377,163	+				-1.1
2,377,164	-				-0.4
2,377,164	-				+1.3
2,377,164	-				+0.7
2,377,191	+				-0.3
2,377,199	+				-0.1
2,377,223	-				+0.2
2,377,238	+				-0.3
2,377,247	+				+0.7
2,377,292	+				-0.3
2,377,293	-				+0.3
2,377,293	-				-1.3
2,377,309	+				+0.5
2,377,319	+				-0.1
2,377,321	+				+2.3
2,377,321	+				-0.3
2,377,321	+				+1.5
2,377,321	+				+1.2
2,377,322	-				+1.2
2,377,327	+				+0.2
2,377,423	-				+1.7
2,377,432	+				+0.1
2,377,432	+				-0.6
2,377,433	-				+0.3
2,377,433	-				-0.5
2,377,444	+				+0.6
2,377,444	+				+3.2
2,377,444	+				+1.3
2,377,445	-				+1.3
2,377,445	-				-0.8
2,377,445	-				-0.0
2,377,445	-				+0.2
2,377,445	-				-1.7
2,377,445	-				+0.2
2,377,446	+				+1.9
2,377,446	+				-0.1
2,377,446	+				-0.2
2,377,446	+				-0.7
2,377,446	+				-1.1
2,377,446	+				+0.2
2,377,446	+				-0.8
2,377,447	-				-0.2
2,377,447	-				+0.9
2,377,447	-				+1.7
2,377,447	-				-0.2
2,377,447	-				+0.7
2,377,447	-				+1.9
2,377,447	-				-0.6
2,377,465	+				-0.9
2,377,465	+				+0.0
2,377,466	-				+0.5
2,377,466	-				-0.4
2,377,466	-				-0.3
2,377,500	+		IAI47_11245	0.11	+0.9
2,377,500	+		IAI47_11245	0.11	-0.3
2,377,501	-		IAI47_11245	0.11	+0.4
2,377,501	-		IAI47_11245	0.11	-0.7
2,377,501	-		IAI47_11245	0.11	-0.3