Strain Fitness in Pantoea sp. MT58 around IAI47_06275

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
1,274,845	+		IAI47_06265	0.81	-0.3
1,274,845	+		IAI47_06265	0.81	-0.8
1,274,845	+		IAI47_06265	0.81	+1.5
1,274,846	-		IAI47_06265	0.81	-0.3
1,274,846	-		IAI47_06265	0.81	-0.4
1,274,879	-		IAI47_06265	0.85	+1.9
1,274,888	+		IAI47_06265	0.87	-0.0
1,274,888	+		IAI47_06265	0.87	-0.6
1,274,888	+		IAI47_06265	0.87	+0.8
1,274,888	+		IAI47_06265	0.87	-0.5
1,274,889	-		IAI47_06265	0.87	+0.3
1,274,978	+				+0.8
1,274,978	+				+1.2
1,274,979	-				-0.2
1,275,015	-				-0.6
1,275,015	-				+0.3
1,275,020	+				+0.0
1,275,046	+				-0.2
1,275,070	-				+1.0
1,275,080	+				-0.5
1,275,152	+				+2.5
1,275,153	-				+0.4
1,275,201	+				-0.8
1,275,201	+				+0.0
1,275,201	+				-0.4
1,275,202	-				-2.4
1,275,202	-				-1.8
1,275,202	-				-2.0
1,275,273	+				-0.5
1,275,273	+				+0.6
1,275,273	+				-0.5
1,275,273	+				-0.2
1,275,273	+				-0.8
1,275,273	+				-1.8
1,275,273	+				+1.0
1,275,274	-				-1.5
1,275,274	-				-0.2
1,275,282	-				-3.2
1,275,289	+				-0.6
1,275,290	-				+0.0
1,275,290	-				-2.0
1,275,343	+		IAI47_06270	0.17	-0.2
1,275,344	-		IAI47_06270	0.18	-0.8
1,275,353	+		IAI47_06270	0.20	-0.9
1,275,354	-		IAI47_06270	0.20	-2.4
1,275,354	-		IAI47_06270	0.20	-0.8
1,275,354	-		IAI47_06270	0.20	-0.8
1,275,354	-		IAI47_06270	0.20	-2.3
1,275,387	+		IAI47_06270	0.27	+1.6
1,275,387	+		IAI47_06270	0.27	-2.4
1,275,387	+		IAI47_06270	0.27	-0.2
1,275,387	+		IAI47_06270	0.27	-0.2
1,275,387	+		IAI47_06270	0.27	+2.1
1,275,388	-		IAI47_06270	0.27	-2.7
1,275,388	-		IAI47_06270	0.27	-1.2
1,275,388	-		IAI47_06270	0.27	-2.8
1,275,390	+		IAI47_06270	0.27	-0.1
1,275,390	+		IAI47_06270	0.27	-0.0
1,275,391	-		IAI47_06270	0.27	-1.2
1,275,391	-		IAI47_06270	0.27	-4.1
1,275,391	-		IAI47_06270	0.27	-2.7
1,275,391	-		IAI47_06270	0.27	-1.1
1,275,396	+		IAI47_06270	0.28	-2.0
1,275,396	+		IAI47_06270	0.28	-0.3
1,275,397	-		IAI47_06270	0.29	-0.2
1,275,414	-		IAI47_06270	0.32	-1.5
1,275,414	-		IAI47_06270	0.32	-1.4
1,275,484	+		IAI47_06270	0.47	-2.1
1,275,484	+		IAI47_06270	0.47	+1.1
1,275,484	+		IAI47_06270	0.47	-0.7
1,275,485	-		IAI47_06270	0.47	-1.2
1,275,485	-		IAI47_06270	0.47	-2.7
1,275,485	-		IAI47_06270	0.47	-0.4
1,275,501	+		IAI47_06270	0.50	+0.1
1,275,501	+		IAI47_06270	0.50	+0.8
1,275,501	+		IAI47_06270	0.50	-2.2
1,275,501	+		IAI47_06270	0.50	+0.2
1,275,501	+		IAI47_06270	0.50	-0.4
1,275,501	+		IAI47_06270	0.50	-0.4
1,275,501	+		IAI47_06270	0.50	-1.1
1,275,501	+		IAI47_06270	0.50	-0.2
1,275,501	+		IAI47_06270	0.50	+1.4
1,275,501	+		IAI47_06270	0.50	-1.3
1,275,501	+		IAI47_06270	0.50	-0.9
1,275,501	+		IAI47_06270	0.50	+0.2
1,275,501	+		IAI47_06270	0.50	+1.4
1,275,501	+		IAI47_06270	0.50	-1.4
1,275,501	+		IAI47_06270	0.50	+0.0
1,275,501	+		IAI47_06270	0.50	-0.4
1,275,501	+		IAI47_06270	0.50	+0.5
1,275,501	+		IAI47_06270	0.50	+0.2
1,275,501	+		IAI47_06270	0.50	-0.9
1,275,501	+		IAI47_06270	0.50	-1.1
1,275,501	+		IAI47_06270	0.50	+0.8
1,275,501	+		IAI47_06270	0.50	-0.2
1,275,502	-		IAI47_06270	0.50	-2.4
1,275,502	-		IAI47_06270	0.50	-2.4
1,275,502	-		IAI47_06270	0.50	-2.3
1,275,502	-		IAI47_06270	0.50	-1.7
1,275,502	-		IAI47_06270	0.50	-1.2
1,275,502	-		IAI47_06270	0.50	-1.6
1,275,502	-		IAI47_06270	0.50	-2.0
1,275,502	-		IAI47_06270	0.50	-2.0
1,275,502	-		IAI47_06270	0.50	+0.2
1,275,502	-		IAI47_06270	0.50	-1.8
1,275,502	-		IAI47_06270	0.50	-2.2
1,275,502	-		IAI47_06270	0.50	-2.7
1,275,502	-		IAI47_06270	0.50	-2.7
1,275,502	-		IAI47_06270	0.50	-3.3
1,275,506	+		IAI47_06270	0.51	-0.0
1,275,620	+		IAI47_06270	0.74	-1.9
1,275,620	+		IAI47_06270	0.74	+0.4
1,275,620	+		IAI47_06270	0.74	-0.9
1,275,620	+		IAI47_06270	0.74	-0.5
1,275,620	+		IAI47_06270	0.74	+0.4
1,275,620	+		IAI47_06270	0.74	-2.0
1,275,621	-		IAI47_06270	0.75	-1.1
1,275,621	-		IAI47_06270	0.75	-2.0
1,275,621	-		IAI47_06270	0.75	-1.5
1,275,621	-		IAI47_06270	0.75	-3.3
1,275,639	-		IAI47_06270	0.78	-2.5
1,275,684	+		IAI47_06270	0.88	+0.6
1,275,684	+		IAI47_06270	0.88	+1.5
1,275,684	+		IAI47_06270	0.88	+0.8
1,275,684	+		IAI47_06270	0.88	-0.5
1,275,684	+		IAI47_06270	0.88	+1.2
1,275,684	+		IAI47_06270	0.88	-0.2
1,275,685	-		IAI47_06270	0.88	+1.0
1,275,685	-		IAI47_06270	0.88	+0.8
1,275,685	-		IAI47_06270	0.88	+0.5
1,275,686	+		IAI47_06270	0.88	+0.4
1,275,686	+		IAI47_06270	0.88	-0.8
1,275,686	+		IAI47_06270	0.88	+0.3
1,275,686	+		IAI47_06270	0.88	-0.2
1,275,686	+		IAI47_06270	0.88	+1.8
1,275,686	+		IAI47_06270	0.88	+1.5
1,275,686	+		IAI47_06270	0.88	+0.8
1,275,686	+		IAI47_06270	0.88	+1.8
1,275,687	-		IAI47_06270	0.88	-1.9
1,275,687	-		IAI47_06270	0.88	-2.0
1,275,687	-		IAI47_06270	0.88	-1.8
1,275,687	-		IAI47_06270	0.88	-0.6
1,275,687	-		IAI47_06270	0.88	-0.5
1,275,687	-		IAI47_06270	0.88	-2.4
1,275,687	-		IAI47_06270	0.88	-2.5
1,275,687	-		IAI47_06270	0.88	-2.8
1,275,687	-		IAI47_06270	0.88	-2.4
1,275,687	-		IAI47_06270	0.88	-1.1
1,275,832	+				-3.8
1,275,832	+				-2.5
1,275,832	+				-3.2
1,275,832	+				-2.4
1,275,832	+				-2.0
1,275,833	-				-3.5
1,275,833	-				-2.0
1,275,885	+				-3.2
1,275,885	+				-2.9
1,275,886	-				-3.1
1,275,981	+		IAI47_06275	0.13	-1.5
1,275,982	-		IAI47_06275	0.13	-2.4
1,275,982	-		IAI47_06275	0.13	-3.1
1,276,003	+		IAI47_06275	0.15	-2.7
1,276,048	+		IAI47_06275	0.18	-1.8
1,276,048	+		IAI47_06275	0.18	-2.9
1,276,048	+		IAI47_06275	0.18	-2.2
1,276,048	+		IAI47_06275	0.18	-3.2
1,276,048	+		IAI47_06275	0.18	-2.5
1,276,048	+		IAI47_06275	0.18	-4.0
1,276,049	-		IAI47_06275	0.18	-3.5
1,276,049	-		IAI47_06275	0.18	-2.8
1,276,049	-		IAI47_06275	0.18	-1.2
1,276,052	+		IAI47_06275	0.18	-4.3
1,276,052	+		IAI47_06275	0.18	-1.2
1,276,052	+		IAI47_06275	0.18	-2.2
1,276,052	+		IAI47_06275	0.18	-1.8
1,276,053	-		IAI47_06275	0.18	-3.3
1,276,053	-		IAI47_06275	0.18	-4.1
1,276,053	-		IAI47_06275	0.18	-3.9
1,276,053	-		IAI47_06275	0.18	-3.5
1,276,053	-		IAI47_06275	0.18	-3.3
1,276,053	-		IAI47_06275	0.18	-2.4
1,276,053	-		IAI47_06275	0.18	-3.3
1,276,053	-		IAI47_06275	0.18	-3.9
1,276,053	-		IAI47_06275	0.18	-2.5
1,276,063	+		IAI47_06275	0.19	-1.2
1,276,083	+		IAI47_06275	0.20	-3.4
1,276,083	+		IAI47_06275	0.20	-2.9
1,276,149	+		IAI47_06275	0.24	-4.6
1,276,149	+		IAI47_06275	0.24	-4.2
1,276,149	+		IAI47_06275	0.24	-1.5
1,276,150	-		IAI47_06275	0.24	-3.1
1,276,150	-		IAI47_06275	0.24	-1.5
1,276,150	-		IAI47_06275	0.24	-0.2
1,276,152	+		IAI47_06275	0.24	-3.1
1,276,152	+		IAI47_06275	0.24	-3.8
1,276,152	+		IAI47_06275	0.24	-2.7
1,276,152	+		IAI47_06275	0.24	-3.0
1,276,152	+		IAI47_06275	0.24	-2.0
1,276,152	+		IAI47_06275	0.24	-0.5
1,276,152	+		IAI47_06275	0.24	-3.4
1,276,153	-		IAI47_06275	0.25	-2.9
1,276,153	-		IAI47_06275	0.25	-2.9
1,276,153	-		IAI47_06275	0.25	-2.5
1,276,153	-		IAI47_06275	0.25	-2.7
1,276,153	-		IAI47_06275	0.25	-3.7
1,276,182	+		IAI47_06275	0.26	-3.7
1,276,182	+		IAI47_06275	0.26	-3.6
1,276,182	+		IAI47_06275	0.26	-2.4
1,276,183	-		IAI47_06275	0.26	-3.7
1,276,183	-		IAI47_06275	0.26	-2.7
1,276,183	-		IAI47_06275	0.26	-1.8
1,276,199	+		IAI47_06275	0.28	-3.3
1,276,259	+		IAI47_06275	0.31	-3.5
1,276,259	+		IAI47_06275	0.31	-0.8
1,276,259	+		IAI47_06275	0.31	-1.2
1,276,259	+		IAI47_06275	0.31	-0.4
1,276,259	+		IAI47_06275	0.31	-3.8
1,276,259	+		IAI47_06275	0.31	-1.5
1,276,260	-		IAI47_06275	0.32	-2.2
1,276,260	-		IAI47_06275	0.32	-2.7
1,276,260	-		IAI47_06275	0.32	-3.7
1,276,260	-		IAI47_06275	0.32	-0.2
1,276,303	-		IAI47_06275	0.34	-1.8
1,276,335	+		IAI47_06275	0.36	-3.9
1,276,335	+		IAI47_06275	0.36	-2.4
1,276,335	+		IAI47_06275	0.36	-1.7
1,276,336	-		IAI47_06275	0.37	-1.2
1,276,336	-		IAI47_06275	0.37	-1.2
1,276,336	-		IAI47_06275	0.37	-3.2
1,276,336	-		IAI47_06275	0.37	-2.4
1,276,393	+		IAI47_06275	0.40	-2.0
1,276,393	+		IAI47_06275	0.40	-2.5
1,276,393	+		IAI47_06275	0.40	-2.0
1,276,393	+		IAI47_06275	0.40	-3.7
1,276,393	+		IAI47_06275	0.40	-3.6
1,276,393	+		IAI47_06275	0.40	-2.8
1,276,393	+		IAI47_06275	0.40	-2.5
1,276,393	+		IAI47_06275	0.40	-0.2
1,276,393	+		IAI47_06275	0.40	-0.2
1,276,393	+		IAI47_06275	0.40	-1.2
1,276,394	-		IAI47_06275	0.40	-1.2
1,276,394	-		IAI47_06275	0.40	-2.5
1,276,474	+		IAI47_06275	0.46	-4.4
1,276,474	+		IAI47_06275	0.46	-3.2
1,276,474	+		IAI47_06275	0.46	-1.8
1,276,474	+		IAI47_06275	0.46	-3.0
1,276,475	-		IAI47_06275	0.46	-1.5
1,276,475	-		IAI47_06275	0.46	-1.2
1,276,475	-		IAI47_06275	0.46	-3.5
1,276,475	-		IAI47_06275	0.46	-2.2
1,276,500	+		IAI47_06275	0.47	-2.9
1,276,501	-		IAI47_06275	0.47	-2.7
1,276,549	+		IAI47_06275	0.51	-3.1
1,276,549	+		IAI47_06275	0.51	-2.0
1,276,549	+		IAI47_06275	0.51	-3.6
1,276,549	+		IAI47_06275	0.51	-1.5
1,276,549	+		IAI47_06275	0.51	-2.3
1,276,549	+		IAI47_06275	0.51	-1.8
1,276,550	-		IAI47_06275	0.51	-3.5
1,276,550	-		IAI47_06275	0.51	-3.8
1,276,550	-		IAI47_06275	0.51	-3.8
1,276,550	-		IAI47_06275	0.51	-2.9
1,276,550	-		IAI47_06275	0.51	-3.4
1,276,550	-		IAI47_06275	0.51	-5.6
1,276,550	-		IAI47_06275	0.51	-0.2
1,276,550	-		IAI47_06275	0.51	-1.5
1,276,550	-		IAI47_06275	0.51	-1.9
1,276,550	-		IAI47_06275	0.51	-2.3
1,276,550	-		IAI47_06275	0.51	-3.9
1,276,555	+		IAI47_06275	0.51	-3.4
1,276,556	-		IAI47_06275	0.51	-1.8
1,276,556	-		IAI47_06275	0.51	-2.0
1,276,556	-		IAI47_06275	0.51	-2.2
1,276,556	-		IAI47_06275	0.51	-3.3
1,276,556	-		IAI47_06275	0.51	-2.5
1,276,556	-		IAI47_06275	0.51	-1.5
1,276,584	+		IAI47_06275	0.53	-2.3
1,276,597	+		IAI47_06275	0.54	-3.5
1,276,683	+		IAI47_06275	0.59	-0.8
1,276,683	+		IAI47_06275	0.59	-0.8
1,276,683	+		IAI47_06275	0.59	-3.0
1,276,704	+		IAI47_06275	0.61	-1.7
1,276,726	-		IAI47_06275	0.62	-3.5
1,276,780	-		IAI47_06275	0.66	-3.7
1,276,785	+		IAI47_06275	0.66	-2.8
1,276,785	+		IAI47_06275	0.66	-3.9
1,276,785	+		IAI47_06275	0.66	-2.5
1,276,785	+		IAI47_06275	0.66	-3.2
1,276,786	-		IAI47_06275	0.66	-3.8
1,276,786	-		IAI47_06275	0.66	-3.0
1,276,786	-		IAI47_06275	0.66	-1.2
1,276,786	-		IAI47_06275	0.66	-3.7
1,276,805	+		IAI47_06275	0.67	-3.1
1,276,805	+		IAI47_06275	0.67	-3.3
1,276,806	-		IAI47_06275	0.68	-2.9
1,276,860	+		IAI47_06275	0.71	-1.8
1,276,887	+		IAI47_06275	0.73	-3.4
1,276,888	-		IAI47_06275	0.73	-3.7
1,276,888	-		IAI47_06275	0.73	-1.2
1,276,996	+		IAI47_06275	0.80	-2.2
1,276,996	+		IAI47_06275	0.80	-5.1
1,276,997	-		IAI47_06275	0.80	-2.0
1,277,007	+		IAI47_06275	0.81	-2.8
1,277,007	+		IAI47_06275	0.81	-4.1
1,277,007	+		IAI47_06275	0.81	-2.4
1,277,007	+		IAI47_06275	0.81	-1.2
1,277,008	-		IAI47_06275	0.81	-3.4
1,277,008	-		IAI47_06275	0.81	-3.7
1,277,008	-		IAI47_06275	0.81	-3.5
1,277,008	-		IAI47_06275	0.81	-2.8
1,277,071	-		IAI47_06275	0.85	-2.0
1,277,071	-		IAI47_06275	0.85	-3.1
1,277,172	+				-2.5
1,277,172	+				-2.7
1,277,172	+				-0.8
1,277,173	-				-2.0
1,277,176	+				-2.8
1,277,177	-				-1.8
1,277,177	-				-2.9
1,277,177	-				-1.9
1,277,177	-				-4.4
1,277,177	-				-2.0
1,277,177	-				-2.0
1,277,177	-				-2.7
1,277,177	-				-3.9
1,277,177	-				-1.8
1,277,203	+				-0.2
1,277,203	+				-1.0
1,277,203	+				-3.2
1,277,204	-				-1.8
1,277,213	-				-0.5
1,277,299	+				+0.0
1,277,299	+				-0.8
1,277,300	-				-1.2
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