Strain Fitness in Pantoea sp. MT58 around IAI47_06120

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
1,244,012	-		IAI47_06115	0.52	-1.5
1,244,050	+		IAI47_06115	0.55	-2.5
1,244,079	+		IAI47_06115	0.57	-1.2
1,244,079	+		IAI47_06115	0.57	-2.4
1,244,080	-		IAI47_06115	0.57	-0.5
1,244,080	-		IAI47_06115	0.57	-1.5
1,244,131	+		IAI47_06115	0.61	-2.5
1,244,131	+		IAI47_06115	0.61	-2.5
1,244,131	+		IAI47_06115	0.61	-1.0
1,244,132	-		IAI47_06115	0.61	-3.8
1,244,151	+		IAI47_06115	0.63	-2.2
1,244,195	-		IAI47_06115	0.66	-3.5
1,244,195	-		IAI47_06115	0.66	-0.9
1,244,203	-		IAI47_06115	0.67	-0.8
1,244,217	+		IAI47_06115	0.68	-3.3
1,244,217	+		IAI47_06115	0.68	-2.0
1,244,218	-		IAI47_06115	0.68	+0.0
1,244,218	-		IAI47_06115	0.68	-2.0
1,244,225	-		IAI47_06115	0.69	-1.4
1,244,225	-		IAI47_06115	0.69	-3.9
1,244,227	+		IAI47_06115	0.69	-1.9
1,244,227	+		IAI47_06115	0.69	-3.1
1,244,227	+		IAI47_06115	0.69	-5.3
1,244,228	-		IAI47_06115	0.69	-1.5
1,244,228	-		IAI47_06115	0.69	-0.2
1,244,228	-		IAI47_06115	0.69	-3.1
1,244,228	-		IAI47_06115	0.69	-2.3
1,244,247	+		IAI47_06115	0.70	-2.4
1,244,288	-		IAI47_06115	0.74	-0.5
1,244,288	-		IAI47_06115	0.74	-1.3
1,244,290	+		IAI47_06115	0.74	-2.5
1,244,290	+		IAI47_06115	0.74	-2.2
1,244,290	+		IAI47_06115	0.74	-2.2
1,244,291	-		IAI47_06115	0.74	-3.1
1,244,291	-		IAI47_06115	0.74	-3.1
1,244,301	+		IAI47_06115	0.75	-3.0
1,244,302	-		IAI47_06115	0.75	-2.7
1,244,308	+		IAI47_06115	0.75	-2.5
1,244,309	-		IAI47_06115	0.75	-2.2
1,244,309	-		IAI47_06115	0.75	-2.4
1,244,335	+		IAI47_06115	0.77	-2.1
1,244,335	+		IAI47_06115	0.77	-2.5
1,244,335	+		IAI47_06115	0.77	-2.0
1,244,336	-		IAI47_06115	0.77	-0.8
1,244,336	-		IAI47_06115	0.77	-3.2
1,244,338	+		IAI47_06115	0.77	-2.4
1,244,338	+		IAI47_06115	0.77	-0.8
1,244,339	-		IAI47_06115	0.78	-1.2
1,244,339	-		IAI47_06115	0.78	-1.5
1,244,339	-		IAI47_06115	0.78	-0.2
1,244,339	-		IAI47_06115	0.78	-1.0
1,244,339	-		IAI47_06115	0.78	-2.7
1,244,339	-		IAI47_06115	0.78	-1.7
1,244,398	+		IAI47_06115	0.82	-1.5
1,244,398	+		IAI47_06115	0.82	-2.9
1,244,399	-		IAI47_06115	0.82	-0.8
1,244,399	-		IAI47_06115	0.82	-1.4
1,244,399	-		IAI47_06115	0.82	-1.5
1,244,399	-		IAI47_06115	0.82	-1.9
1,244,399	-		IAI47_06115	0.82	-2.7
1,244,400	+		IAI47_06115	0.82	-3.2
1,244,400	+		IAI47_06115	0.82	+0.2
1,244,400	+		IAI47_06115	0.82	-1.7
1,244,400	+		IAI47_06115	0.82	-2.2
1,244,400	+		IAI47_06115	0.82	-1.1
1,244,401	-		IAI47_06115	0.82	-2.7
1,244,401	-		IAI47_06115	0.82	-2.2
1,244,401	-		IAI47_06115	0.82	-0.6
1,244,401	-		IAI47_06115	0.82	-2.4
1,244,435	+		IAI47_06115	0.85	-0.8
1,244,513	+				-1.0
1,244,514	-				-1.2
1,244,524	+				+0.8
1,244,525	-				-2.8
1,244,525	-				-1.1
1,244,556	+				-2.4
1,244,557	-				+0.2
1,244,557	-				-2.0
1,244,557	-				-2.5
1,244,617	+				-2.7
1,244,617	+				-2.2
1,244,617	+				-2.7
1,244,617	+				-1.4
1,244,617	+				-2.0
1,244,617	+				-1.8
1,244,618	-				-2.2
1,244,647	+				+0.8
1,244,647	+				+0.2
1,244,648	-				-0.8
1,244,650	+				-2.2
1,244,651	-				-0.2
1,244,651	-				+2.2
1,244,654	+				-1.3
1,244,654	+				+0.8
1,244,654	+				-1.0
1,244,654	+				-2.6
1,244,654	+				-1.6
1,244,654	+				-2.5
1,244,654	+				-0.6
1,244,654	+				+0.8
1,244,655	-				-0.0
1,244,655	-				-0.4
1,244,655	-				-0.2
1,244,655	-				-0.3
1,244,660	+				-2.0
1,244,661	-				+2.4
1,244,661	-				+1.0
1,244,661	-				-0.2
1,244,661	-				+0.9
1,244,661	-				+1.2
1,244,672	+				-0.2
1,244,673	-				+1.1
1,244,673	-				+0.0
1,244,693	-				+0.9
1,244,704	+				-0.1
1,244,704	+				-0.4
1,244,705	-				+0.5
1,244,715	+				+0.0
1,244,715	+				-1.2
1,244,715	+				-0.6
1,244,715	+				-1.9
1,244,715	+				-2.2
1,244,716	-				+0.1
1,244,716	-				+1.6
1,244,716	-				-0.5
1,244,735	+				+0.9
1,244,736	-				-0.5
1,244,736	-				-0.2
1,244,736	-				+0.2
1,244,737	+				+0.1
1,244,737	+				-0.3
1,244,737	+				+0.0
1,244,737	+				-0.2
1,244,737	+				+0.2
1,244,737	+				+0.2
1,244,737	+				-1.4
1,244,737	+				-0.7
1,244,738	-				-0.5
1,244,738	-				-0.6
1,244,738	-				+0.6
1,244,738	-				+0.2
1,244,738	-				+0.2
1,244,738	-				-0.4
1,244,738	-				-1.0
1,244,738	-				-0.0
1,244,738	-				+0.4
1,244,738	-				+0.1
1,244,738	-				-1.2
1,244,738	-				+2.2
1,244,738	-				+0.4
1,244,738	-				-0.2
1,244,738	-				-0.4
1,244,738	-				-1.0
1,244,738	-				+0.5
1,244,765	-				+0.1
1,244,765	-				+0.5
1,244,827	+				+0.6
1,244,828	-				+1.4
1,244,828	-				+0.6
1,244,828	-				+0.9
1,244,842	+				+0.5
1,244,842	+				+0.8
1,244,881	+				+2.3
1,244,882	-				+0.0
1,244,892	+				-1.0
1,244,893	+				+0.2
1,244,900	+				-1.3
1,244,943	+				+0.6
1,244,944	-				-0.4
1,244,999	+				-0.1
1,245,063	-		IAI47_06120	0.26	-0.0
1,245,063	-		IAI47_06120	0.26	-0.6
1,245,137	+		IAI47_06120	0.51	+0.9
1,245,137	+		IAI47_06120	0.51	-0.1
1,245,138	-		IAI47_06120	0.52	+0.3
1,245,199	+		IAI47_06120	0.72	-0.4
1,245,200	-		IAI47_06120	0.72	-1.0
1,245,200	-		IAI47_06120	0.72	+0.2
1,245,279	+				-0.0
1,245,280	-				+0.5
1,245,298	+				+0.1
1,245,298	+				+0.2
1,245,298	+				-0.4
1,245,299	-				-0.2
1,245,299	-				-0.7
1,245,299	-				-1.1
1,245,299	-				+0.5
1,245,299	-				-0.4
1,245,352	-				+0.2
1,245,376	+				-0.7
1,245,438	+				+0.5
1,245,438	+				-0.6
1,245,438	+				+1.2
1,245,438	+				-1.2
1,245,438	+				+0.5
1,245,438	+				+0.8
1,245,439	-				-0.0
1,245,439	-				+0.8
1,245,439	-				+1.8
1,245,501	+				-0.6
1,245,565	+				+0.5
1,245,565	+				-1.5
1,245,565	+				-0.6
1,245,565	+				+0.8
1,245,565	+				+0.3
1,245,565	+				+0.8
1,245,565	+				+1.1
1,245,565	+				-0.3
1,245,565	+				-1.0
1,245,565	+				+0.5
1,245,565	+				-1.5
1,245,565	+				-0.1
1,245,565	+				-1.2
1,245,566	-				-1.4
1,245,566	-				+0.8
1,245,566	-				+1.0
1,245,566	-				+2.1
1,245,566	-				+1.0
1,245,566	-				+0.9
1,245,566	-				+1.2
1,245,566	-				-0.8
1,245,566	-				+2.2
1,245,566	-				-0.4
1,245,566	-				-0.7
1,245,566	-				+1.5
1,245,566	-				-0.7
1,245,566	-				+1.2
1,245,566	-				-0.2
1,245,566	-				+0.1
1,245,566	-				+0.8
1,245,582	+		IAI47_06125	0.11	+0.9
1,245,583	-		IAI47_06125	0.11	+1.4
1,245,615	+		IAI47_06125	0.13	-0.0
1,245,615	+		IAI47_06125	0.13	-0.7
1,245,615	+		IAI47_06125	0.13	-0.2
1,245,616	-		IAI47_06125	0.13	+1.4
1,245,616	-		IAI47_06125	0.13	-0.3
1,245,684	+		IAI47_06125	0.19	-0.0
1,245,684	+		IAI47_06125	0.19	+1.4
1,245,684	+		IAI47_06125	0.19	-0.2
1,245,685	-		IAI47_06125	0.19	+0.3
1,245,702	+		IAI47_06125	0.20	-0.4
1,245,702	+		IAI47_06125	0.20	+0.3
1,245,702	+		IAI47_06125	0.20	-0.1
1,245,702	+		IAI47_06125	0.20	-0.5
1,245,702	+		IAI47_06125	0.20	-0.7
1,245,702	+		IAI47_06125	0.20	-0.2
1,245,703	-		IAI47_06125	0.20	+0.5
1,245,703	-		IAI47_06125	0.20	-0.0
1,245,703	-		IAI47_06125	0.20	+0.2
1,245,703	-		IAI47_06125	0.20	-0.9
1,245,703	-		IAI47_06125	0.20	-1.2
1,245,703	-		IAI47_06125	0.20	+1.6
1,245,703	-		IAI47_06125	0.20	-0.5
1,245,703	-		IAI47_06125	0.20	+0.1
1,245,703	-		IAI47_06125	0.20	+0.2
1,245,703	-		IAI47_06125	0.20	-2.5
1,245,703	-		IAI47_06125	0.20	-0.5
1,245,706	+		IAI47_06125	0.20	-1.1
1,245,706	+		IAI47_06125	0.20	-0.3
1,245,706	+		IAI47_06125	0.20	-1.2
1,245,706	+		IAI47_06125	0.20	-0.1
1,245,707	-		IAI47_06125	0.20	+0.1
1,245,707	-		IAI47_06125	0.20	+0.0
1,245,707	-		IAI47_06125	0.20	+0.1
1,245,707	-		IAI47_06125	0.20	+1.3
1,245,707	-		IAI47_06125	0.20	-0.6
1,245,716	+		IAI47_06125	0.21	+1.5
1,245,716	+		IAI47_06125	0.21	+0.3
1,245,716	+		IAI47_06125	0.21	+1.6
1,245,716	+		IAI47_06125	0.21	+0.3
1,245,716	+		IAI47_06125	0.21	-0.5
1,245,716	+		IAI47_06125	0.21	+1.0
1,245,716	+		IAI47_06125	0.21	+0.0
1,245,716	+		IAI47_06125	0.21	-0.3
1,245,716	+		IAI47_06125	0.21	-0.8
1,245,716	+		IAI47_06125	0.21	-0.5
1,245,717	-		IAI47_06125	0.21	-0.4
1,245,850	+		IAI47_06125	0.31	-0.2
1,245,971	+		IAI47_06125	0.41	-1.2
1,246,015	+		IAI47_06125	0.44	+0.8
1,246,165	+		IAI47_06125	0.55	+0.6
1,246,165	+		IAI47_06125	0.55	+0.8
1,246,165	+		IAI47_06125	0.55	-0.9
1,246,165	+		IAI47_06125	0.55	-0.1
1,246,166	-		IAI47_06125	0.55	-1.5
1,246,174	+		IAI47_06125	0.56	+1.5
1,246,174	+		IAI47_06125	0.56	-1.6
1,246,175	-		IAI47_06125	0.56	-0.8
1,246,175	-		IAI47_06125	0.56	+0.1
1,246,197	-		IAI47_06125	0.58	-1.0
1,246,234	+		IAI47_06125	0.61	-1.4
1,246,234	+		IAI47_06125	0.61	+0.8
1,246,234	+		IAI47_06125	0.61	-0.5
1,246,235	-		IAI47_06125	0.61	+0.8
1,246,235	-		IAI47_06125	0.61	+0.2
1,246,240	+		IAI47_06125	0.61	-0.5
1,246,240	+		IAI47_06125	0.61	+0.9
1,246,240	+		IAI47_06125	0.61	+0.4
1,246,240	+		IAI47_06125	0.61	-0.1
1,246,241	-		IAI47_06125	0.61	+1.2
1,246,255	+		IAI47_06125	0.62	-0.2
1,246,256	-		IAI47_06125	0.62	-0.4
1,246,256	-		IAI47_06125	0.62	-1.4