Strain Fitness in Pantoea sp. MT58 around IAI47_05555

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
1,168,599	-		IAI47_05550	0.52	-0.4
1,168,610	+		IAI47_05550	0.52	-1.1
1,168,622	+		IAI47_05550	0.53	-0.4
1,168,623	-		IAI47_05550	0.53	-0.2
1,168,623	-		IAI47_05550	0.53	+0.3
1,168,623	-		IAI47_05550	0.53	+0.8
1,168,748	+		IAI47_05550	0.61	+0.8
1,168,749	+		IAI47_05550	0.61	+0.5
1,168,749	+		IAI47_05550	0.61	-1.0
1,168,749	+		IAI47_05550	0.61	-0.4
1,168,749	+		IAI47_05550	0.61	+0.1
1,168,749	+		IAI47_05550	0.61	+0.1
1,168,750	-		IAI47_05550	0.61	-0.9
1,168,750	-		IAI47_05550	0.61	-0.0
1,168,850	-		IAI47_05550	0.67	-0.7
1,168,922	-		IAI47_05550	0.71	-0.9
1,168,954	+		IAI47_05550	0.73	-0.7
1,168,955	-		IAI47_05550	0.73	-0.6
1,168,971	+		IAI47_05550	0.74	-1.4
1,168,973	+		IAI47_05550	0.74	-0.5
1,168,973	+		IAI47_05550	0.74	-0.2
1,168,973	+		IAI47_05550	0.74	+0.8
1,168,974	-		IAI47_05550	0.74	+0.3
1,168,974	-		IAI47_05550	0.74	-0.2
1,168,974	-		IAI47_05550	0.74	+0.1
1,168,974	-		IAI47_05550	0.74	+0.3
1,169,105	-		IAI47_05550	0.82	+0.1
1,169,120	+		IAI47_05550	0.83	+0.5
1,169,121	-		IAI47_05550	0.83	+0.1
1,169,121	-		IAI47_05550	0.83	+0.3
1,169,121	-		IAI47_05550	0.83	+0.4
1,169,130	+		IAI47_05550	0.84	-0.5
1,169,130	+		IAI47_05550	0.84	+0.5
1,169,130	+		IAI47_05550	0.84	-0.5
1,169,131	-		IAI47_05550	0.84	+0.5
1,169,132	+		IAI47_05550	0.84	+1.1
1,169,169	+		IAI47_05550	0.86	-1.5
1,169,169	+		IAI47_05550	0.86	+0.1
1,169,169	+		IAI47_05550	0.86	+0.7
1,169,170	-		IAI47_05550	0.86	-1.1
1,169,170	-		IAI47_05550	0.86	+0.5
1,169,170	-		IAI47_05550	0.86	+0.4
1,169,170	-		IAI47_05550	0.86	-1.1
1,169,170	-		IAI47_05550	0.86	+0.2
1,169,177	+		IAI47_05550	0.87	-0.6
1,169,177	+		IAI47_05550	0.87	-0.8
1,169,266	+				-0.2
1,169,267	-				-0.9
1,169,267	-				-0.6
1,169,324	+				+0.0
1,169,325	-				+0.6
1,169,325	-				-0.5
1,169,353	+				-0.6
1,169,354	-				-0.0
1,169,354	-				+0.8
1,169,405	+				+0.8
1,169,405	+				-0.5
1,169,405	+				-0.5
1,169,406	-				+0.8
1,169,406	-				-1.0
1,169,406	-				+1.5
1,169,430	-				-0.4
1,169,446	-				-1.2
1,169,446	-				+0.3
1,169,458	+				+0.9
1,169,458	+				+0.2
1,169,458	+				+0.2
1,169,458	+				+0.9
1,169,458	+				-0.4
1,169,497	+				+1.5
1,169,511	+				-0.1
1,169,513	+				+0.6
1,169,513	+				-0.1
1,169,514	-				-0.8
1,169,530	+				-1.0
1,169,530	+				+0.7
1,169,530	+				+0.7
1,169,530	+				-0.0
1,169,530	+				+0.1
1,169,531	-				+0.8
1,169,531	-				-0.3
1,169,531	-				-0.2
1,169,566	+				-0.5
1,169,566	+				+0.0
1,169,566	+				+1.1
1,169,566	+				+0.3
1,169,566	+				-2.0
1,169,566	+				+0.8
1,169,566	+				-1.3
1,169,566	+				-2.0
1,169,566	+				-0.8
1,169,566	+				+0.3
1,169,566	+				-0.1
1,169,567	-				-0.2
1,169,567	-				+1.0
1,169,567	-				+1.1
1,169,567	-				-2.0
1,169,567	-				-1.0
1,169,567	-				-0.4
1,169,567	-				-0.3
1,169,567	-				-0.3
1,169,567	-				+0.8
1,169,567	-				-0.3
1,169,567	-				+0.0
1,169,567	-				-0.3
1,169,567	-				-0.3
1,169,567	-				+0.0
1,169,596	-				-0.8
1,169,668	+		IAI47_05555	0.11	-0.5
1,169,669	-		IAI47_05555	0.12	+1.4
1,169,725	-		IAI47_05555	0.17	+1.2
1,169,736	+		IAI47_05555	0.19	+0.3
1,169,736	+		IAI47_05555	0.19	-1.2
1,169,736	+		IAI47_05555	0.19	-0.1
1,169,736	+		IAI47_05555	0.19	+1.4
1,169,736	+		IAI47_05555	0.19	+0.4
1,169,736	+		IAI47_05555	0.19	-0.8
1,169,736	+		IAI47_05555	0.19	-0.7
1,169,736	+		IAI47_05555	0.19	-0.1
1,169,736	+		IAI47_05555	0.19	+0.3
1,169,736	+		IAI47_05555	0.19	+1.8
1,169,736	+		IAI47_05555	0.19	-1.2
1,169,737	-		IAI47_05555	0.19	+0.0
1,169,737	-		IAI47_05555	0.19	-0.2
1,169,737	-		IAI47_05555	0.19	+0.8
1,169,737	-		IAI47_05555	0.19	+1.8
1,169,737	-		IAI47_05555	0.19	+1.3
1,169,737	-		IAI47_05555	0.19	-1.1
1,169,742	+		IAI47_05555	0.19	-0.9
1,169,802	+		IAI47_05555	0.25	-0.1
1,169,850	+		IAI47_05555	0.30	+0.1
1,169,868	-		IAI47_05555	0.32	-0.2
1,169,877	+		IAI47_05555	0.33	+0.2
1,169,877	+		IAI47_05555	0.33	-1.0
1,169,878	-		IAI47_05555	0.33	-0.2
1,169,878	-		IAI47_05555	0.33	-1.2
1,169,878	-		IAI47_05555	0.33	-0.2
1,169,937	+		IAI47_05555	0.39	-0.6
1,169,937	+		IAI47_05555	0.39	+0.4
1,169,938	-		IAI47_05555	0.39	+0.3
1,169,943	+		IAI47_05555	0.40	-1.5
1,169,943	+		IAI47_05555	0.40	+0.1
1,169,953	+		IAI47_05555	0.41	+1.3
1,169,953	+		IAI47_05555	0.41	-0.0
1,169,953	+		IAI47_05555	0.41	-1.1
1,169,953	+		IAI47_05555	0.41	-0.8
1,169,953	+		IAI47_05555	0.41	-0.2
1,169,953	+		IAI47_05555	0.41	+0.2
1,169,953	+		IAI47_05555	0.41	+1.3
1,169,954	-		IAI47_05555	0.41	-1.4
1,169,954	-		IAI47_05555	0.41	+1.4
1,169,954	-		IAI47_05555	0.41	-0.2
1,169,954	-		IAI47_05555	0.41	+0.6
1,169,954	-		IAI47_05555	0.41	-0.1
1,169,954	-		IAI47_05555	0.41	+0.0
1,169,954	-		IAI47_05555	0.41	+0.1
1,169,972	+		IAI47_05555	0.43	+0.8
1,169,972	+		IAI47_05555	0.43	+0.4
1,169,973	-		IAI47_05555	0.43	+0.2
1,170,145	-		IAI47_05555	0.61	-1.8
1,170,276	+		IAI47_05555	0.74	+0.1
1,170,276	+		IAI47_05555	0.74	+0.4
1,170,276	+		IAI47_05555	0.74	+0.4
1,170,277	-		IAI47_05555	0.75	-0.2
1,170,277	-		IAI47_05555	0.75	+1.1
1,170,277	-		IAI47_05555	0.75	-0.6
1,170,277	-		IAI47_05555	0.75	-0.1
1,170,331	+		IAI47_05555	0.80	+0.5
1,170,331	+		IAI47_05555	0.80	-0.8
1,170,331	+		IAI47_05555	0.80	+0.4
1,170,331	+		IAI47_05555	0.80	+0.1
1,170,332	-		IAI47_05555	0.80	+1.5
1,170,332	-		IAI47_05555	0.80	-0.5
1,170,332	-		IAI47_05555	0.80	+0.4
1,170,334	-		IAI47_05555	0.80	-0.5
1,170,405	+		IAI47_05555	0.88	+1.4
1,170,405	+		IAI47_05555	0.88	-0.9
1,170,405	+		IAI47_05555	0.88	+0.8
1,170,405	+		IAI47_05555	0.88	-2.0
1,170,406	-		IAI47_05555	0.88	-0.7
1,170,406	-		IAI47_05555	0.88	+0.8
1,170,406	-		IAI47_05555	0.88	-0.1
1,170,406	-		IAI47_05555	0.88	-0.3
1,170,424	+		IAI47_05555	0.90	+0.4
1,170,424	+		IAI47_05555	0.90	+0.8
1,170,425	-		IAI47_05555	0.90	+0.9
1,170,425	-		IAI47_05555	0.90	+0.2
1,170,425	-		IAI47_05555	0.90	+1.8
1,170,445	+				-0.2
1,170,445	+				-1.2
1,170,453	+				+0.5
1,170,453	+				-0.9
1,170,454	-				+0.0
1,170,454	-				+0.3
1,170,454	-				+0.5
1,170,532	-				+0.5
1,170,690	+				+0.8
1,170,691	-				+0.6
1,170,718	+				-0.3
1,170,719	-				+0.9
1,170,719	-				+1.1
1,170,719	-				-0.2
1,170,724	+				+0.4
1,170,725	-				+1.1
1,170,725	-				+0.6
1,170,725	-				+0.8
1,170,725	-				+0.5
1,170,766	+		IAI47_05560	0.11	+0.5
1,170,767	-		IAI47_05560	0.11	-0.8
1,170,774	+		IAI47_05560	0.12	-0.2
1,170,774	+		IAI47_05560	0.12	+0.1
1,170,774	+		IAI47_05560	0.12	+1.0
1,170,774	+		IAI47_05560	0.12	-0.5
1,170,774	+		IAI47_05560	0.12	+0.6
1,170,774	+		IAI47_05560	0.12	+1.3
1,170,775	-		IAI47_05560	0.12	+1.2
1,170,775	-		IAI47_05560	0.12	+3.6
1,170,775	-		IAI47_05560	0.12	+0.7
1,170,775	-		IAI47_05560	0.12	-0.8
1,170,784	+		IAI47_05560	0.13	-0.7
1,170,785	-		IAI47_05560	0.13	+1.4
1,170,828	+				-0.1
1,170,828	+		IAI47_05560	0.19	+0.1
1,170,829	-		IAI47_05560	0.19	+0.8
1,170,829	-		IAI47_05560	0.19	-0.4
1,170,829	-		IAI47_05560	0.19	+0.7
1,170,887	-		IAI47_05560	0.27	-1.5
1,170,887	-		IAI47_05560	0.27	-0.4
1,170,903	+		IAI47_05560	0.29	-0.2
1,170,903	+		IAI47_05560	0.29	-1.1
1,170,903	+		IAI47_05560	0.29	-0.1
1,170,903	+		IAI47_05560	0.29	+1.5
1,170,903	+		IAI47_05560	0.29	-0.1
1,170,904	-		IAI47_05560	0.29	-0.9
1,170,904	-		IAI47_05560	0.29	-2.7
1,170,920	-		IAI47_05560	0.32	+0.7
1,170,921	+		IAI47_05560	0.32	+0.2
1,170,921	+		IAI47_05560	0.32	-0.5
1,170,921	+		IAI47_05560	0.32	+0.6
1,170,955	-		IAI47_05560	0.36	+0.6
1,170,955	-		IAI47_05560	0.36	-1.8
1,170,955	-		IAI47_05560	0.36	+0.4
1,170,957	+		IAI47_05560	0.37	-0.5
1,170,957	+		IAI47_05560	0.37	-1.8
1,170,958	-		IAI47_05560	0.37	+3.1
1,170,958	-		IAI47_05560	0.37	+0.5
1,170,958	-		IAI47_05560	0.37	+0.2
1,170,958	-		IAI47_05560	0.37	+0.6
1,170,961	+		IAI47_05560	0.37	+0.0
1,170,961	+		IAI47_05560	0.37	+0.2
1,170,962	-		IAI47_05560	0.37	-0.3
1,170,962	-		IAI47_05560	0.37	-0.1
1,170,962	-		IAI47_05560	0.37	-0.4
1,170,998	-		IAI47_05560	0.42	+1.0
1,171,033	+		IAI47_05560	0.47	+0.8
1,171,033	+		IAI47_05560	0.47	-0.8
1,171,033	+		IAI47_05560	0.47	-1.5
1,171,034	-		IAI47_05560	0.47	+0.3
1,171,110	+		IAI47_05560	0.58	-0.0
1,171,110	+		IAI47_05560	0.58	+0.2
1,171,125	+		IAI47_05560	0.60	+0.5
1,171,125	+		IAI47_05560	0.60	+0.6
1,171,154	+		IAI47_05560	0.64	+0.3
1,171,154	+		IAI47_05560	0.64	-0.3
1,171,154	+		IAI47_05560	0.64	-0.3
1,171,154	+		IAI47_05560	0.64	+0.8
1,171,155	-		IAI47_05560	0.64	+0.3
1,171,155	-		IAI47_05560	0.64	+0.5
1,171,155	-		IAI47_05560	0.64	+0.8
1,171,155	-		IAI47_05560	0.64	+0.5
1,171,177	+		IAI47_05560	0.67	+1.2
1,171,178	-		IAI47_05560	0.67	-0.2
1,171,180	+		IAI47_05560	0.67	-0.9
1,171,217	-		IAI47_05560	0.72	-0.1
1,171,217	-		IAI47_05560	0.72	-0.6
1,171,234	+		IAI47_05560	0.75	-0.5
1,171,234	+		IAI47_05560	0.75	-0.8
1,171,234	+		IAI47_05560	0.75	-1.2
1,171,234	+		IAI47_05560	0.75	-0.3
1,171,234	+		IAI47_05560	0.75	+0.9
1,171,234	+		IAI47_05560	0.75	+0.2
1,171,234	+		IAI47_05560	0.75	+0.8
1,171,234	+		IAI47_05560	0.75	+0.8
1,171,235	-		IAI47_05560	0.75	+1.4
1,171,235	-		IAI47_05560	0.75	+0.4
1,171,235	-		IAI47_05560	0.75	-0.3
1,171,235	-		IAI47_05560	0.75	-0.5
1,171,235	-		IAI47_05560	0.75	+0.1
1,171,235	-		IAI47_05560	0.75	+1.9
1,171,252	+		IAI47_05560	0.77	-0.4
1,171,253	-		IAI47_05560	0.77	-0.1
1,171,253	-		IAI47_05560	0.77	+0.8
1,171,255	+		IAI47_05560	0.78	+0.4
1,171,255	+		IAI47_05560	0.78	+0.2
1,171,255	+		IAI47_05560	0.78	-2.0
1,171,255	+		IAI47_05560	0.78	-1.4
1,171,255	+		IAI47_05560	0.78	-0.6
1,171,255	+		IAI47_05560	0.78	+0.8
1,171,255	+		IAI47_05560	0.78	-0.3
1,171,256	-		IAI47_05560	0.78	+0.8
1,171,256	-		IAI47_05560	0.78	+0.8
1,171,256	-		IAI47_05560	0.78	-0.2
1,171,256	-		IAI47_05560	0.78	-0.2
1,171,256	-		IAI47_05560	0.78	-0.7
1,171,256	-		IAI47_05560	0.78	-1.0
1,171,256	-		IAI47_05560	0.78	-2.3
1,171,256	-		IAI47_05560	0.78	-0.2
1,171,296	+		IAI47_05560	0.83	-0.0
1,171,297	-		IAI47_05560	0.83	-0.6
1,171,304	+		IAI47_05560	0.84	+0.1
1,171,304	+		IAI47_05560	0.84	+0.3
1,171,304	+		IAI47_05560	0.84	-0.7
1,171,304	+		IAI47_05560	0.84	+0.6
1,171,305	-		IAI47_05560	0.84	+0.5
1,171,305	-		IAI47_05560	0.84	-0.3
1,171,305	-		IAI47_05560	0.84	+0.6
1,171,405	+				+1.3
1,171,405	+				+0.7
1,171,458	+				+1.8