Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04650 and IAI47_04655 are separated by 1 nucleotides IAI47_04655 and IAI47_04660 are separated by 12 nucleotides IAI47_04660 and IAI47_04665 are separated by 623 nucleotides
IAI47_04650: IAI47_04650 - sugar ABC transporter ATP-binding protein, at 978,858 to 980,363
_04650
IAI47_04655: IAI47_04655 - substrate-binding domain-containing protein, at 980,365 to 981,348
_04655
IAI47_04660: IAI47_04660 - DeoR/GlpR transcriptional regulator, at 981,361 to 982,191
_04660
IAI47_04665: IAI47_04665 - ABC transporter substrate-binding protein, at 982,815 to 983,966
_04665
Position (kb) 981
982
983 Strain fitness (log2 ratio) -2
-1
0
1
2 at 980.363 kb on + strand at 980.363 kb on + strand at 980.380 kb on + strand at 980.381 kb on - strand at 980.381 kb on - strand at 980.458 kb on + strand at 980.459 kb on - strand at 980.459 kb on - strand at 980.493 kb on + strand, within IAI47_04655 at 980.493 kb on + strand, within IAI47_04655 at 980.526 kb on + strand, within IAI47_04655 at 980.567 kb on + strand, within IAI47_04655 at 980.567 kb on + strand, within IAI47_04655 at 980.568 kb on - strand, within IAI47_04655 at 980.587 kb on - strand, within IAI47_04655 at 980.733 kb on + strand, within IAI47_04655 at 980.733 kb on + strand, within IAI47_04655 at 980.733 kb on + strand, within IAI47_04655 at 980.733 kb on + strand, within IAI47_04655 at 980.733 kb on + strand, within IAI47_04655 at 980.733 kb on + strand, within IAI47_04655 at 980.734 kb on - strand, within IAI47_04655 at 980.734 kb on - strand, within IAI47_04655 at 980.734 kb on - strand, within IAI47_04655 at 980.734 kb on - strand, within IAI47_04655 at 980.754 kb on + strand, within IAI47_04655 at 980.820 kb on - strand, within IAI47_04655 at 980.834 kb on + strand, within IAI47_04655 at 980.834 kb on + strand, within IAI47_04655 at 980.834 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.891 kb on + strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.892 kb on - strand, within IAI47_04655 at 980.900 kb on + strand, within IAI47_04655 at 980.900 kb on + strand, within IAI47_04655 at 980.901 kb on - strand, within IAI47_04655 at 980.901 kb on - strand, within IAI47_04655 at 980.901 kb on - strand, within IAI47_04655 at 980.940 kb on + strand, within IAI47_04655 at 980.940 kb on + strand, within IAI47_04655 at 980.940 kb on + strand, within IAI47_04655 at 980.941 kb on - strand, within IAI47_04655 at 980.941 kb on - strand, within IAI47_04655 at 980.941 kb on - strand, within IAI47_04655 at 980.941 kb on - strand, within IAI47_04655 at 980.941 kb on - strand, within IAI47_04655 at 980.941 kb on - strand, within IAI47_04655 at 980.969 kb on - strand, within IAI47_04655 at 981.100 kb on - strand, within IAI47_04655 at 981.162 kb on + strand, within IAI47_04655 at 981.162 kb on + strand, within IAI47_04655 at 981.186 kb on + strand, within IAI47_04655 at 981.210 kb on + strand, within IAI47_04655 at 981.210 kb on + strand, within IAI47_04655 at 981.211 kb on - strand, within IAI47_04655 at 981.211 kb on - strand, within IAI47_04655 at 981.264 kb on + strand at 981.264 kb on + strand at 981.265 kb on - strand at 981.265 kb on - strand at 981.271 kb on - strand at 981.279 kb on + strand at 981.320 kb on - strand at 981.320 kb on - strand at 981.320 kb on - strand at 981.333 kb on + strand at 981.374 kb on - strand at 981.374 kb on - strand at 981.374 kb on - strand at 981.388 kb on - strand at 981.390 kb on - strand at 981.457 kb on + strand, within IAI47_04660 at 981.457 kb on + strand, within IAI47_04660 at 981.468 kb on + strand, within IAI47_04660 at 981.468 kb on + strand, within IAI47_04660 at 981.468 kb on + strand, within IAI47_04660 at 981.499 kb on + strand, within IAI47_04660 at 981.499 kb on + strand, within IAI47_04660 at 981.499 kb on + strand, within IAI47_04660 at 981.499 kb on + strand, within IAI47_04660 at 981.500 kb on - strand, within IAI47_04660 at 981.528 kb on + strand, within IAI47_04660 at 981.528 kb on + strand, within IAI47_04660 at 981.594 kb on + strand, within IAI47_04660 at 981.594 kb on + strand, within IAI47_04660 at 981.595 kb on - strand, within IAI47_04660 at 981.614 kb on - strand, within IAI47_04660 at 981.614 kb on - strand, within IAI47_04660 at 981.617 kb on + strand, within IAI47_04660 at 981.617 kb on + strand, within IAI47_04660 at 981.639 kb on + strand, within IAI47_04660 at 981.640 kb on - strand, within IAI47_04660 at 981.657 kb on + strand, within IAI47_04660 at 981.725 kb on + strand, within IAI47_04660 at 981.744 kb on + strand, within IAI47_04660 at 981.745 kb on - strand, within IAI47_04660 at 981.745 kb on - strand, within IAI47_04660 at 981.778 kb on + strand, within IAI47_04660 at 981.800 kb on - strand, within IAI47_04660 at 981.800 kb on - strand, within IAI47_04660 at 981.802 kb on + strand, within IAI47_04660 at 981.803 kb on - strand, within IAI47_04660 at 981.803 kb on - strand, within IAI47_04660 at 981.839 kb on + strand, within IAI47_04660 at 981.840 kb on - strand, within IAI47_04660 at 981.852 kb on + strand, within IAI47_04660 at 981.853 kb on - strand, within IAI47_04660 at 981.858 kb on + strand, within IAI47_04660 at 981.859 kb on - strand, within IAI47_04660 at 981.859 kb on - strand, within IAI47_04660 at 981.859 kb on - strand, within IAI47_04660 at 981.859 kb on - strand, within IAI47_04660 at 981.859 kb on - strand, within IAI47_04660 at 981.865 kb on + strand, within IAI47_04660 at 981.866 kb on - strand, within IAI47_04660 at 981.888 kb on + strand, within IAI47_04660 at 981.888 kb on + strand, within IAI47_04660 at 981.889 kb on - strand, within IAI47_04660 at 981.889 kb on - strand, within IAI47_04660 at 981.912 kb on + strand, within IAI47_04660 at 981.912 kb on + strand, within IAI47_04660 at 981.939 kb on + strand, within IAI47_04660 at 981.940 kb on - strand, within IAI47_04660 at 981.985 kb on - strand, within IAI47_04660 at 982.045 kb on + strand, within IAI47_04660 at 982.046 kb on - strand, within IAI47_04660 at 982.049 kb on - strand, within IAI47_04660 at 982.073 kb on - strand, within IAI47_04660 at 982.144 kb on + strand at 982.145 kb on - strand at 982.146 kb on + strand at 982.147 kb on - strand at 982.150 kb on - strand at 982.191 kb on + strand at 982.191 kb on + strand at 982.191 kb on + strand at 982.192 kb on - strand at 982.192 kb on - strand at 982.192 kb on - strand at 982.192 kb on - strand at 982.192 kb on - strand at 982.195 kb on + strand at 982.195 kb on + strand at 982.195 kb on + strand at 982.196 kb on - strand at 982.209 kb on + strand at 982.209 kb on + strand at 982.211 kb on + strand at 982.212 kb on - strand at 982.212 kb on - strand at 982.212 kb on - strand at 982.212 kb on - strand at 982.212 kb on - strand at 982.212 kb on - strand at 982.216 kb on + strand at 982.216 kb on + strand at 982.217 kb on - strand at 982.266 kb on + strand at 982.285 kb on + strand at 982.305 kb on - strand at 982.361 kb on + strand at 982.368 kb on - strand at 982.369 kb on + strand at 982.369 kb on + strand at 982.369 kb on + strand at 982.370 kb on - strand at 982.370 kb on - strand at 982.370 kb on - strand at 982.378 kb on + strand at 982.378 kb on + strand at 982.379 kb on - strand at 982.400 kb on + strand at 982.400 kb on + strand at 982.401 kb on - strand at 982.405 kb on + strand at 982.405 kb on + strand at 982.405 kb on + strand at 982.406 kb on - strand at 982.407 kb on + strand at 982.408 kb on - strand at 982.408 kb on - strand at 982.409 kb on + strand at 982.409 kb on + strand at 982.409 kb on + strand at 982.409 kb on + strand at 982.466 kb on - strand at 982.498 kb on + strand at 982.498 kb on + strand at 982.499 kb on - strand at 982.610 kb on + strand at 982.629 kb on + strand at 982.629 kb on + strand at 982.705 kb on + strand at 982.705 kb on + strand at 982.706 kb on - strand at 982.821 kb on + strand at 982.821 kb on + strand at 982.821 kb on + strand at 982.821 kb on + strand at 982.821 kb on + strand at 982.822 kb on - strand at 982.822 kb on - strand at 982.835 kb on - strand at 982.838 kb on - strand at 982.838 kb on - strand at 982.838 kb on - strand at 982.861 kb on + strand at 982.861 kb on + strand at 982.861 kb on + strand at 982.861 kb on + strand at 982.861 kb on + strand at 982.861 kb on + strand at 982.861 kb on + strand at 982.862 kb on - strand at 982.862 kb on - strand at 982.862 kb on - strand at 982.862 kb on - strand at 982.862 kb on - strand at 982.899 kb on - strand at 982.903 kb on + strand at 982.904 kb on - strand at 982.978 kb on + strand, within IAI47_04665 at 982.979 kb on - strand, within IAI47_04665 at 982.979 kb on - strand, within IAI47_04665 at 983.088 kb on + strand, within IAI47_04665 at 983.089 kb on - strand, within IAI47_04665 at 983.089 kb on - strand, within IAI47_04665 at 983.089 kb on - strand, within IAI47_04665 at 983.089 kb on - strand, within IAI47_04665
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 980,363 + +0.7 980,363 + +0.5 980,380 + -0.4 980,381 - -0.2 980,381 - +0.6 980,458 + -0.8 980,459 - -0.0 980,459 - +0.0 980,493 + IAI47_04655 0.13 +2.5 980,493 + IAI47_04655 0.13 -1.2 980,526 + IAI47_04655 0.16 -1.4 980,567 + IAI47_04655 0.21 +0.7 980,567 + IAI47_04655 0.21 -0.3 980,568 - IAI47_04655 0.21 -0.2 980,587 - IAI47_04655 0.23 -0.6 980,733 + IAI47_04655 0.37 +0.8 980,733 + IAI47_04655 0.37 -0.2 980,733 + IAI47_04655 0.37 +0.9 980,733 + IAI47_04655 0.37 +0.4 980,733 + IAI47_04655 0.37 +0.6 980,733 + IAI47_04655 0.37 +1.4 980,734 - IAI47_04655 0.38 -0.6 980,734 - IAI47_04655 0.38 -1.0 980,734 - IAI47_04655 0.38 -2.3 980,734 - IAI47_04655 0.38 +0.0 980,754 + IAI47_04655 0.40 +1.6 980,820 - IAI47_04655 0.46 +0.1 980,834 + IAI47_04655 0.48 +1.2 980,834 + IAI47_04655 0.48 +0.4 980,834 + IAI47_04655 0.48 +0.4 980,891 + IAI47_04655 0.53 +0.3 980,891 + IAI47_04655 0.53 -1.0 980,891 + IAI47_04655 0.53 -0.8 980,891 + IAI47_04655 0.53 +0.4 980,891 + IAI47_04655 0.53 -0.4 980,891 + IAI47_04655 0.53 -0.5 980,891 + IAI47_04655 0.53 -0.7 980,891 + IAI47_04655 0.53 -0.8 980,891 + IAI47_04655 0.53 -0.5 980,891 + IAI47_04655 0.53 -0.3 980,891 + IAI47_04655 0.53 +0.7 980,891 + IAI47_04655 0.53 -1.4 980,891 + IAI47_04655 0.53 -0.4 980,891 + IAI47_04655 0.53 -1.8 980,891 + IAI47_04655 0.53 +0.5 980,891 + IAI47_04655 0.53 -0.3 980,891 + IAI47_04655 0.53 -0.5 980,891 + IAI47_04655 0.53 +0.6 980,891 + IAI47_04655 0.53 -1.2 980,891 + IAI47_04655 0.53 +0.4 980,891 + IAI47_04655 0.53 -0.5 980,891 + IAI47_04655 0.53 +0.4 980,891 + IAI47_04655 0.53 -0.4 980,892 - IAI47_04655 0.54 -0.1 980,892 - IAI47_04655 0.54 -0.6 980,892 - IAI47_04655 0.54 +1.0 980,892 - IAI47_04655 0.54 -0.2 980,892 - IAI47_04655 0.54 -2.4 980,892 - IAI47_04655 0.54 -1.4 980,892 - IAI47_04655 0.54 +0.0 980,892 - IAI47_04655 0.54 -1.1 980,892 - IAI47_04655 0.54 +0.4 980,892 - IAI47_04655 0.54 +0.5 980,892 - IAI47_04655 0.54 +1.1 980,892 - IAI47_04655 0.54 -0.2 980,892 - IAI47_04655 0.54 -0.2 980,892 - IAI47_04655 0.54 -0.5 980,892 - IAI47_04655 0.54 +0.1 980,892 - IAI47_04655 0.54 +0.0 980,892 - IAI47_04655 0.54 -1.3 980,892 - IAI47_04655 0.54 +0.1 980,892 - IAI47_04655 0.54 +2.0 980,892 - IAI47_04655 0.54 +1.7 980,892 - IAI47_04655 0.54 -0.8 980,892 - IAI47_04655 0.54 -0.4 980,900 + IAI47_04655 0.54 +0.8 980,900 + IAI47_04655 0.54 +0.6 980,901 - IAI47_04655 0.54 -1.4 980,901 - IAI47_04655 0.54 -1.2 980,901 - IAI47_04655 0.54 +0.3 980,940 + IAI47_04655 0.58 +0.0 980,940 + IAI47_04655 0.58 -2.4 980,940 + IAI47_04655 0.58 -0.3 980,941 - IAI47_04655 0.59 +0.6 980,941 - IAI47_04655 0.59 +0.0 980,941 - IAI47_04655 0.59 +1.8 980,941 - IAI47_04655 0.59 -0.2 980,941 - IAI47_04655 0.59 -0.5 980,941 - IAI47_04655 0.59 +0.5 980,969 - IAI47_04655 0.61 -0.6 981,100 - IAI47_04655 0.75 -1.2 981,162 + IAI47_04655 0.81 +0.6 981,162 + IAI47_04655 0.81 -0.1 981,186 + IAI47_04655 0.83 +0.3 981,210 + IAI47_04655 0.86 +0.1 981,210 + IAI47_04655 0.86 -1.0 981,211 - IAI47_04655 0.86 -0.4 981,211 - IAI47_04655 0.86 -0.9 981,264 + +1.1 981,264 + +1.4 981,265 - +0.8 981,265 - -1.2 981,271 - +0.1 981,279 + +2.0 981,320 - +0.7 981,320 - +0.2 981,320 - +2.0 981,333 + -0.6 981,374 - -0.6 981,374 - -0.6 981,374 - +0.8 981,388 - +0.4 981,390 - -0.3 981,457 + IAI47_04660 0.12 -1.6 981,457 + IAI47_04660 0.12 -1.2 981,468 + IAI47_04660 0.13 +0.0 981,468 + IAI47_04660 0.13 -0.1 981,468 + IAI47_04660 0.13 -0.4 981,499 + IAI47_04660 0.17 -2.0 981,499 + IAI47_04660 0.17 -0.6 981,499 + IAI47_04660 0.17 +0.7 981,499 + IAI47_04660 0.17 -1.2 981,500 - IAI47_04660 0.17 -0.5 981,528 + IAI47_04660 0.20 +0.4 981,528 + IAI47_04660 0.20 +1.1 981,594 + IAI47_04660 0.28 +0.6 981,594 + IAI47_04660 0.28 -0.5 981,595 - IAI47_04660 0.28 +0.3 981,614 - IAI47_04660 0.30 +0.5 981,614 - IAI47_04660 0.30 +0.9 981,617 + IAI47_04660 0.31 +2.1 981,617 + IAI47_04660 0.31 -2.6 981,639 + IAI47_04660 0.33 -0.1 981,640 - IAI47_04660 0.34 +0.4 981,657 + IAI47_04660 0.36 +0.0 981,725 + IAI47_04660 0.44 +1.5 981,744 + IAI47_04660 0.46 +0.2 981,745 - IAI47_04660 0.46 -0.4 981,745 - IAI47_04660 0.46 +0.3 981,778 + IAI47_04660 0.50 +0.6 981,800 - IAI47_04660 0.53 +0.8 981,800 - IAI47_04660 0.53 -0.8 981,802 + IAI47_04660 0.53 -0.0 981,803 - IAI47_04660 0.53 -1.1 981,803 - IAI47_04660 0.53 -0.2 981,839 + IAI47_04660 0.58 -0.1 981,840 - IAI47_04660 0.58 -0.2 981,852 + IAI47_04660 0.59 +1.2 981,853 - IAI47_04660 0.59 +0.1 981,858 + IAI47_04660 0.60 +0.8 981,859 - IAI47_04660 0.60 -0.3 981,859 - IAI47_04660 0.60 -0.0 981,859 - IAI47_04660 0.60 +0.8 981,859 - IAI47_04660 0.60 +0.2 981,859 - IAI47_04660 0.60 -0.3 981,865 + IAI47_04660 0.61 +0.8 981,866 - IAI47_04660 0.61 -0.2 981,888 + IAI47_04660 0.63 -1.6 981,888 + IAI47_04660 0.63 +0.6 981,889 - IAI47_04660 0.64 +0.1 981,889 - IAI47_04660 0.64 -1.6 981,912 + IAI47_04660 0.66 +0.8 981,912 + IAI47_04660 0.66 -0.9 981,939 + IAI47_04660 0.70 -0.2 981,940 - IAI47_04660 0.70 +0.4 981,985 - IAI47_04660 0.75 -0.5 982,045 + IAI47_04660 0.82 -0.3 982,046 - IAI47_04660 0.82 -0.2 982,049 - IAI47_04660 0.83 -0.9 982,073 - IAI47_04660 0.86 -0.1 982,144 + -1.5 982,145 - +0.7 982,146 + +0.1 982,147 - -0.0 982,150 - +1.1 982,191 + -0.4 982,191 + +0.6 982,191 + -0.5 982,192 - +0.2 982,192 - -0.4 982,192 - +0.2 982,192 - -0.4 982,192 - +0.6 982,195 + +0.2 982,195 + -0.4 982,195 + +0.1 982,196 - -0.9 982,209 + +0.8 982,209 + +0.5 982,211 + +1.5 982,212 - +1.6 982,212 - -0.4 982,212 - +1.0 982,212 - +2.0 982,212 - +2.6 982,212 - +0.8 982,216 + +0.4 982,216 + +0.1 982,217 - -0.4 982,266 + +0.5 982,285 + +1.0 982,305 - -0.2 982,361 + -0.5 982,368 - -1.0 982,369 + -0.4 982,369 + -0.4 982,369 + -0.6 982,370 - -0.6 982,370 - -0.1 982,370 - -0.8 982,378 + +0.7 982,378 + +0.6 982,379 - -0.1 982,400 + +0.5 982,400 + -0.9 982,401 - -0.7 982,405 + -0.6 982,405 + +0.7 982,405 + +1.8 982,406 - +0.8 982,407 + +0.5 982,408 - +0.8 982,408 - +1.0 982,409 + +0.7 982,409 + -1.2 982,409 + -0.9 982,409 + -0.4 982,466 - -0.9 982,498 + +0.2 982,498 + -0.9 982,499 - -1.0 982,610 + +0.3 982,629 + +0.2 982,629 + -0.5 982,705 + +0.8 982,705 + -0.3 982,706 - +0.8 982,821 + -1.2 982,821 + +0.3 982,821 + -2.4 982,821 + -1.1 982,821 + +0.6 982,822 - +0.3 982,822 - +0.3 982,835 - -1.8 982,838 - -0.4 982,838 - -0.7 982,838 - +0.8 982,861 + +0.6 982,861 + +0.7 982,861 + -0.3 982,861 + -0.2 982,861 + -0.9 982,861 + -0.7 982,861 + +1.8 982,862 - -1.2 982,862 - -1.5 982,862 - -1.8 982,862 - +0.0 982,862 - +0.3 982,899 - -1.3 982,903 + +0.7 982,904 - +0.8 982,978 + IAI47_04665 0.14 -1.1 982,979 - IAI47_04665 0.14 +0.7 982,979 - IAI47_04665 0.14 +0.8 983,088 + IAI47_04665 0.24 -1.2 983,089 - IAI47_04665 0.24 +1.1 983,089 - IAI47_04665 0.24 -0.8 983,089 - IAI47_04665 0.24 +0.1 983,089 - IAI47_04665 0.24 -0.1
Or see this region's nucleotide sequence