Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04565 and IAI47_04570 are separated by 85 nucleotides IAI47_04570 and IAI47_04575 are separated by 0 nucleotides IAI47_04575 and IAI47_04580 are separated by 255 nucleotides IAI47_04580 and IAI47_04585 overlap by 8 nucleotides
IAI47_04565: IAI47_04565 - homocysteine S-methyltransferase, at 961,149 to 962,084
_04565
IAI47_04570: IAI47_04570 - hypothetical protein, at 962,170 to 962,589
_04570
IAI47_04575: IAI47_04575 - spermidine N1-acetyltransferase, at 962,590 to 963,135
_04575
IAI47_04580: IAI47_04580 - ABC transporter ATP-binding protein, at 963,391 to 964,068
_04580
IAI47_04585: IAI47_04585 - ABC transporter ATP-binding protein, at 964,061 to 964,891
_04585
Position (kb) 962
963
964 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 961.730 kb on + strand, within IAI47_04565 at 961.730 kb on + strand, within IAI47_04565 at 961.751 kb on + strand, within IAI47_04565 at 961.751 kb on + strand, within IAI47_04565 at 961.751 kb on + strand, within IAI47_04565 at 961.752 kb on - strand, within IAI47_04565 at 961.923 kb on + strand, within IAI47_04565 at 961.923 kb on + strand, within IAI47_04565 at 961.923 kb on + strand, within IAI47_04565 at 961.923 kb on + strand, within IAI47_04565 at 961.923 kb on + strand, within IAI47_04565 at 961.923 kb on + strand, within IAI47_04565 at 961.923 kb on + strand, within IAI47_04565 at 961.923 kb on + strand, within IAI47_04565 at 961.923 kb on + strand, within IAI47_04565 at 961.924 kb on - strand, within IAI47_04565 at 961.924 kb on - strand, within IAI47_04565 at 962.082 kb on + strand at 962.082 kb on + strand at 962.083 kb on - strand at 962.083 kb on - strand at 962.083 kb on - strand at 962.083 kb on - strand at 962.083 kb on - strand at 962.106 kb on + strand at 962.106 kb on + strand at 962.106 kb on + strand at 962.107 kb on - strand at 962.135 kb on - strand at 962.135 kb on - strand at 962.212 kb on - strand, within IAI47_04570 at 962.212 kb on - strand, within IAI47_04570 at 962.308 kb on + strand, within IAI47_04570 at 962.368 kb on + strand, within IAI47_04570 at 962.369 kb on - strand, within IAI47_04570 at 962.369 kb on - strand, within IAI47_04570 at 962.386 kb on + strand, within IAI47_04570 at 962.387 kb on - strand, within IAI47_04570 at 962.387 kb on - strand, within IAI47_04570 at 962.413 kb on + strand, within IAI47_04570 at 962.414 kb on - strand, within IAI47_04570 at 962.424 kb on + strand, within IAI47_04570 at 962.433 kb on + strand, within IAI47_04570 at 962.434 kb on - strand, within IAI47_04570 at 962.458 kb on + strand, within IAI47_04570 at 962.459 kb on - strand, within IAI47_04570 at 962.472 kb on + strand, within IAI47_04570 at 962.472 kb on + strand, within IAI47_04570 at 962.480 kb on + strand, within IAI47_04570 at 962.480 kb on + strand, within IAI47_04570 at 962.480 kb on + strand, within IAI47_04570 at 962.481 kb on - strand, within IAI47_04570 at 962.481 kb on - strand, within IAI47_04570 at 962.519 kb on - strand, within IAI47_04570 at 962.530 kb on + strand, within IAI47_04570 at 962.530 kb on + strand, within IAI47_04570 at 962.530 kb on + strand, within IAI47_04570 at 962.531 kb on - strand, within IAI47_04570 at 962.531 kb on - strand, within IAI47_04570 at 962.531 kb on - strand, within IAI47_04570 at 962.531 kb on - strand, within IAI47_04570 at 962.531 kb on - strand, within IAI47_04570 at 962.629 kb on - strand at 962.629 kb on - strand at 962.642 kb on + strand at 962.642 kb on + strand at 962.642 kb on + strand at 962.642 kb on + strand at 962.642 kb on + strand at 962.643 kb on - strand at 962.643 kb on - strand at 962.643 kb on - strand at 962.643 kb on - strand at 962.643 kb on - strand at 962.681 kb on + strand, within IAI47_04575 at 962.682 kb on - strand, within IAI47_04575 at 962.692 kb on - strand, within IAI47_04575 at 962.709 kb on + strand, within IAI47_04575 at 962.709 kb on + strand, within IAI47_04575 at 962.709 kb on + strand, within IAI47_04575 at 962.710 kb on - strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.744 kb on + strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.745 kb on - strand, within IAI47_04575 at 962.748 kb on + strand, within IAI47_04575 at 962.748 kb on + strand, within IAI47_04575 at 962.748 kb on + strand, within IAI47_04575 at 962.748 kb on + strand, within IAI47_04575 at 962.748 kb on + strand, within IAI47_04575 at 962.748 kb on + strand, within IAI47_04575 at 962.748 kb on + strand, within IAI47_04575 at 962.748 kb on + strand, within IAI47_04575 at 962.748 kb on + strand, within IAI47_04575 at 962.748 kb on + strand, within IAI47_04575 at 962.748 kb on + strand, within IAI47_04575 at 962.748 kb on + strand, within IAI47_04575 at 962.749 kb on - strand, within IAI47_04575 at 962.749 kb on - strand, within IAI47_04575 at 962.749 kb on - strand, within IAI47_04575 at 962.749 kb on - strand, within IAI47_04575 at 962.749 kb on - strand, within IAI47_04575 at 962.749 kb on - strand, within IAI47_04575 at 962.749 kb on - strand, within IAI47_04575 at 962.749 kb on - strand, within IAI47_04575 at 962.749 kb on - strand, within IAI47_04575 at 962.749 kb on - strand, within IAI47_04575 at 962.749 kb on - strand, within IAI47_04575 at 962.786 kb on + strand, within IAI47_04575 at 962.786 kb on + strand, within IAI47_04575 at 962.787 kb on - strand, within IAI47_04575 at 962.787 kb on - strand, within IAI47_04575 at 962.787 kb on - strand, within IAI47_04575 at 962.787 kb on - strand, within IAI47_04575 at 962.787 kb on - strand, within IAI47_04575 at 962.793 kb on + strand, within IAI47_04575 at 962.793 kb on + strand, within IAI47_04575 at 962.793 kb on + strand, within IAI47_04575 at 962.793 kb on + strand, within IAI47_04575 at 962.793 kb on + strand, within IAI47_04575 at 962.794 kb on - strand, within IAI47_04575 at 962.794 kb on - strand, within IAI47_04575 at 962.794 kb on - strand, within IAI47_04575 at 962.795 kb on + strand, within IAI47_04575 at 962.795 kb on + strand, within IAI47_04575 at 962.795 kb on + strand, within IAI47_04575 at 962.795 kb on + strand, within IAI47_04575 at 962.795 kb on + strand, within IAI47_04575 at 962.796 kb on - strand, within IAI47_04575 at 962.796 kb on - strand, within IAI47_04575 at 962.796 kb on - strand, within IAI47_04575 at 962.796 kb on - strand, within IAI47_04575 at 962.796 kb on - strand, within IAI47_04575 at 962.917 kb on - strand, within IAI47_04575 at 962.917 kb on - strand, within IAI47_04575 at 962.955 kb on + strand, within IAI47_04575 at 962.955 kb on + strand, within IAI47_04575 at 962.955 kb on + strand, within IAI47_04575 at 962.956 kb on - strand, within IAI47_04575 at 962.956 kb on - strand, within IAI47_04575 at 963.005 kb on + strand, within IAI47_04575 at 963.005 kb on + strand, within IAI47_04575 at 963.035 kb on + strand, within IAI47_04575 at 963.036 kb on - strand, within IAI47_04575 at 963.075 kb on + strand, within IAI47_04575 at 963.128 kb on - strand at 963.128 kb on - strand at 963.156 kb on + strand at 963.156 kb on + strand at 963.156 kb on + strand at 963.156 kb on + strand at 963.157 kb on - strand at 963.157 kb on - strand at 963.157 kb on - strand at 963.171 kb on + strand at 963.172 kb on - strand at 963.207 kb on + strand at 963.207 kb on + strand at 963.207 kb on + strand at 963.208 kb on - strand at 963.209 kb on + strand at 963.209 kb on + strand at 963.209 kb on + strand at 963.210 kb on - strand at 963.210 kb on - strand at 963.224 kb on - strand at 963.224 kb on - strand at 963.228 kb on + strand at 963.228 kb on + strand at 963.228 kb on + strand at 963.228 kb on + strand at 963.229 kb on - strand at 963.240 kb on + strand at 963.241 kb on - strand at 963.246 kb on - strand at 963.308 kb on + strand at 963.309 kb on - strand at 963.309 kb on - strand at 963.319 kb on - strand at 963.319 kb on - strand at 963.319 kb on - strand at 963.450 kb on + strand at 963.450 kb on + strand at 963.450 kb on + strand at 963.451 kb on - strand at 963.451 kb on - strand at 963.451 kb on - strand at 963.451 kb on - strand at 963.451 kb on - strand at 963.459 kb on + strand, within IAI47_04580 at 963.552 kb on + strand, within IAI47_04580 at 963.552 kb on + strand, within IAI47_04580 at 963.553 kb on - strand, within IAI47_04580 at 963.553 kb on - strand, within IAI47_04580 at 963.553 kb on - strand, within IAI47_04580 at 963.712 kb on - strand, within IAI47_04580 at 963.712 kb on - strand, within IAI47_04580 at 963.723 kb on + strand, within IAI47_04580 at 963.724 kb on - strand, within IAI47_04580 at 963.724 kb on - strand, within IAI47_04580 at 963.724 kb on - strand, within IAI47_04580 at 963.724 kb on - strand, within IAI47_04580 at 963.797 kb on + strand, within IAI47_04580 at 963.797 kb on + strand, within IAI47_04580 at 963.797 kb on + strand, within IAI47_04580 at 963.798 kb on - strand, within IAI47_04580 at 963.798 kb on - strand, within IAI47_04580 at 963.798 kb on - strand, within IAI47_04580 at 963.867 kb on + strand, within IAI47_04580 at 963.868 kb on - strand, within IAI47_04580 at 963.868 kb on - strand, within IAI47_04580 at 963.868 kb on - strand, within IAI47_04580 at 963.868 kb on - strand, within IAI47_04580 at 963.996 kb on + strand, within IAI47_04580 at 963.997 kb on - strand, within IAI47_04580 at 963.997 kb on - strand, within IAI47_04580 at 963.997 kb on - strand, within IAI47_04580 at 964.025 kb on + strand at 964.026 kb on - strand at 964.026 kb on - strand at 964.026 kb on - strand at 964.057 kb on + strand at 964.057 kb on + strand at 964.057 kb on + strand at 964.058 kb on - strand at 964.058 kb on - strand at 964.069 kb on - strand at 964.069 kb on - strand at 964.103 kb on + strand at 964.104 kb on - strand at 964.104 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 961,730 + IAI47_04565 0.62 +0.5 961,730 + IAI47_04565 0.62 -1.3 961,751 + IAI47_04565 0.64 +0.6 961,751 + IAI47_04565 0.64 +0.2 961,751 + IAI47_04565 0.64 +0.3 961,752 - IAI47_04565 0.64 +2.2 961,923 + IAI47_04565 0.83 +0.8 961,923 + IAI47_04565 0.83 -1.2 961,923 + IAI47_04565 0.83 +0.9 961,923 + IAI47_04565 0.83 -1.0 961,923 + IAI47_04565 0.83 +0.4 961,923 + IAI47_04565 0.83 +0.0 961,923 + IAI47_04565 0.83 +0.1 961,923 + IAI47_04565 0.83 +0.2 961,923 + IAI47_04565 0.83 +0.6 961,924 - IAI47_04565 0.83 +2.5 961,924 - IAI47_04565 0.83 -1.4 962,082 + -0.5 962,082 + +0.7 962,083 - -0.2 962,083 - +0.9 962,083 - +1.2 962,083 - -0.6 962,083 - +0.1 962,106 + +0.8 962,106 + +0.4 962,106 + -0.3 962,107 - -0.6 962,135 - -0.1 962,135 - +0.2 962,212 - IAI47_04570 0.10 +1.3 962,212 - IAI47_04570 0.10 -1.8 962,308 + IAI47_04570 0.33 -0.3 962,368 + IAI47_04570 0.47 +0.4 962,369 - IAI47_04570 0.47 +1.2 962,369 - IAI47_04570 0.47 +0.4 962,386 + IAI47_04570 0.51 -0.0 962,387 - IAI47_04570 0.52 -1.4 962,387 - IAI47_04570 0.52 -1.0 962,413 + IAI47_04570 0.58 -0.3 962,414 - IAI47_04570 0.58 -0.2 962,424 + IAI47_04570 0.60 +0.8 962,433 + IAI47_04570 0.63 -0.6 962,434 - IAI47_04570 0.63 +1.2 962,458 + IAI47_04570 0.69 -0.4 962,459 - IAI47_04570 0.69 +0.0 962,472 + IAI47_04570 0.72 +0.4 962,472 + IAI47_04570 0.72 +0.8 962,480 + IAI47_04570 0.74 +0.2 962,480 + IAI47_04570 0.74 -1.8 962,480 + IAI47_04570 0.74 -0.1 962,481 - IAI47_04570 0.74 -0.3 962,481 - IAI47_04570 0.74 -0.2 962,519 - IAI47_04570 0.83 +0.8 962,530 + IAI47_04570 0.86 +0.8 962,530 + IAI47_04570 0.86 +0.1 962,530 + IAI47_04570 0.86 +0.4 962,531 - IAI47_04570 0.86 -0.2 962,531 - IAI47_04570 0.86 +0.5 962,531 - IAI47_04570 0.86 -0.9 962,531 - IAI47_04570 0.86 -0.6 962,531 - IAI47_04570 0.86 -0.7 962,629 - +1.4 962,629 - +0.2 962,642 + -0.2 962,642 + -2.6 962,642 + -2.0 962,642 + -2.5 962,642 + -1.6 962,643 - -0.4 962,643 - -1.4 962,643 - -0.8 962,643 - -2.9 962,643 - -0.5 962,681 + IAI47_04575 0.17 -0.8 962,682 - IAI47_04575 0.17 -1.5 962,692 - IAI47_04575 0.19 +0.4 962,709 + IAI47_04575 0.22 -2.8 962,709 + IAI47_04575 0.22 -1.9 962,709 + IAI47_04575 0.22 -1.9 962,710 - IAI47_04575 0.22 -3.8 962,744 + IAI47_04575 0.28 -2.4 962,744 + IAI47_04575 0.28 -1.5 962,744 + IAI47_04575 0.28 -1.5 962,744 + IAI47_04575 0.28 -2.7 962,744 + IAI47_04575 0.28 -1.0 962,744 + IAI47_04575 0.28 -1.2 962,744 + IAI47_04575 0.28 -2.4 962,744 + IAI47_04575 0.28 -1.7 962,744 + IAI47_04575 0.28 -1.8 962,744 + IAI47_04575 0.28 -2.0 962,744 + IAI47_04575 0.28 -1.7 962,744 + IAI47_04575 0.28 -1.9 962,744 + IAI47_04575 0.28 -2.0 962,744 + IAI47_04575 0.28 +1.8 962,744 + IAI47_04575 0.28 -1.5 962,744 + IAI47_04575 0.28 -4.0 962,745 - IAI47_04575 0.28 -1.2 962,745 - IAI47_04575 0.28 -0.9 962,745 - IAI47_04575 0.28 -2.4 962,745 - IAI47_04575 0.28 -3.5 962,745 - IAI47_04575 0.28 -3.7 962,745 - IAI47_04575 0.28 -1.2 962,745 - IAI47_04575 0.28 -1.5 962,745 - IAI47_04575 0.28 -2.0 962,745 - IAI47_04575 0.28 -1.6 962,745 - IAI47_04575 0.28 -2.0 962,745 - IAI47_04575 0.28 -0.9 962,745 - IAI47_04575 0.28 -2.6 962,745 - IAI47_04575 0.28 -0.6 962,745 - IAI47_04575 0.28 -0.2 962,745 - IAI47_04575 0.28 -2.0 962,748 + IAI47_04575 0.29 -3.4 962,748 + IAI47_04575 0.29 -2.2 962,748 + IAI47_04575 0.29 -1.6 962,748 + IAI47_04575 0.29 -1.9 962,748 + IAI47_04575 0.29 +0.8 962,748 + IAI47_04575 0.29 -2.5 962,748 + IAI47_04575 0.29 -2.1 962,748 + IAI47_04575 0.29 -2.8 962,748 + IAI47_04575 0.29 -1.5 962,748 + IAI47_04575 0.29 +0.4 962,748 + IAI47_04575 0.29 -1.7 962,748 + IAI47_04575 0.29 -2.3 962,749 - IAI47_04575 0.29 -1.8 962,749 - IAI47_04575 0.29 -2.4 962,749 - IAI47_04575 0.29 -2.2 962,749 - IAI47_04575 0.29 -2.0 962,749 - IAI47_04575 0.29 -1.8 962,749 - IAI47_04575 0.29 -1.6 962,749 - IAI47_04575 0.29 -2.9 962,749 - IAI47_04575 0.29 -2.8 962,749 - IAI47_04575 0.29 -1.0 962,749 - IAI47_04575 0.29 -1.5 962,749 - IAI47_04575 0.29 -2.4 962,786 + IAI47_04575 0.36 -2.0 962,786 + IAI47_04575 0.36 +1.8 962,787 - IAI47_04575 0.36 -0.8 962,787 - IAI47_04575 0.36 -1.9 962,787 - IAI47_04575 0.36 -1.6 962,787 - IAI47_04575 0.36 -1.5 962,787 - IAI47_04575 0.36 -2.2 962,793 + IAI47_04575 0.37 -1.4 962,793 + IAI47_04575 0.37 -1.7 962,793 + IAI47_04575 0.37 -2.2 962,793 + IAI47_04575 0.37 -3.6 962,793 + IAI47_04575 0.37 -2.0 962,794 - IAI47_04575 0.37 -1.4 962,794 - IAI47_04575 0.37 -2.4 962,794 - IAI47_04575 0.37 -1.2 962,795 + IAI47_04575 0.38 -2.4 962,795 + IAI47_04575 0.38 +0.1 962,795 + IAI47_04575 0.38 -0.7 962,795 + IAI47_04575 0.38 -3.1 962,795 + IAI47_04575 0.38 -2.0 962,796 - IAI47_04575 0.38 -0.2 962,796 - IAI47_04575 0.38 -2.2 962,796 - IAI47_04575 0.38 -1.3 962,796 - IAI47_04575 0.38 -2.3 962,796 - IAI47_04575 0.38 -1.2 962,917 - IAI47_04575 0.60 +0.8 962,917 - IAI47_04575 0.60 -1.2 962,955 + IAI47_04575 0.67 -0.2 962,955 + IAI47_04575 0.67 -1.0 962,955 + IAI47_04575 0.67 -1.4 962,956 - IAI47_04575 0.67 -0.8 962,956 - IAI47_04575 0.67 -2.5 963,005 + IAI47_04575 0.76 -1.5 963,005 + IAI47_04575 0.76 -1.0 963,035 + IAI47_04575 0.82 -1.0 963,036 - IAI47_04575 0.82 -2.0 963,075 + IAI47_04575 0.89 -0.2 963,128 - -2.4 963,128 - -1.8 963,156 + +0.5 963,156 + +1.2 963,156 + -0.3 963,156 + +0.9 963,157 - +0.5 963,157 - +0.8 963,157 - -0.2 963,171 + -3.0 963,172 - -0.2 963,207 + -0.2 963,207 + +0.1 963,207 + -0.0 963,208 - -1.5 963,209 + +0.1 963,209 + -0.1 963,209 + -1.3 963,210 - -0.8 963,210 - +0.7 963,224 - -0.2 963,224 - -0.4 963,228 + +0.1 963,228 + +0.4 963,228 + +1.3 963,228 + +0.3 963,229 - +1.0 963,240 + +0.3 963,241 - -0.5 963,246 - +0.3 963,308 + +0.8 963,309 - -0.2 963,309 - +1.1 963,319 - -0.2 963,319 - +0.2 963,319 - -0.8 963,450 + +0.8 963,450 + -0.8 963,450 + -0.1 963,451 - -0.9 963,451 - -0.6 963,451 - -0.1 963,451 - +0.9 963,451 - +0.1 963,459 + IAI47_04580 0.10 -0.3 963,552 + IAI47_04580 0.24 -0.0 963,552 + IAI47_04580 0.24 -0.2 963,553 - IAI47_04580 0.24 -0.2 963,553 - IAI47_04580 0.24 +0.1 963,553 - IAI47_04580 0.24 +0.5 963,712 - IAI47_04580 0.47 -0.2 963,712 - IAI47_04580 0.47 +0.4 963,723 + IAI47_04580 0.49 -1.2 963,724 - IAI47_04580 0.49 -1.8 963,724 - IAI47_04580 0.49 +2.0 963,724 - IAI47_04580 0.49 -2.9 963,724 - IAI47_04580 0.49 -0.1 963,797 + IAI47_04580 0.60 -0.1 963,797 + IAI47_04580 0.60 +0.7 963,797 + IAI47_04580 0.60 -0.2 963,798 - IAI47_04580 0.60 -1.6 963,798 - IAI47_04580 0.60 -0.2 963,798 - IAI47_04580 0.60 -0.8 963,867 + IAI47_04580 0.70 +1.0 963,868 - IAI47_04580 0.70 +1.0 963,868 - IAI47_04580 0.70 +0.0 963,868 - IAI47_04580 0.70 -0.8 963,868 - IAI47_04580 0.70 -0.2 963,996 + IAI47_04580 0.89 -0.5 963,997 - IAI47_04580 0.89 +1.7 963,997 - IAI47_04580 0.89 -1.2 963,997 - IAI47_04580 0.89 -0.8 964,025 + +3.1 964,026 - -0.6 964,026 - +0.3 964,026 - -2.2 964,057 + -2.1 964,057 + -1.0 964,057 + +0.1 964,058 - -0.2 964,058 - +1.7 964,069 - +0.8 964,069 - -0.9 964,103 + +0.1 964,104 - -0.8 964,104 - +0.0
Or see this region's nucleotide sequence