Strain Fitness in Pantoea sp. MT58 around IAI47_03690

Experiment: Ying_Others16 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_03685 and IAI47_03690 are separated by 51 nucleotidesIAI47_03690 and IAI47_03695 are separated by 105 nucleotides IAI47_03685: IAI47_03685 - erythrose-4-phosphate dehydrogenase, at 769,198 to 770,217 _03685 IAI47_03690: IAI47_03690 - phosphoglycerate kinase, at 770,269 to 771,432 _03690 IAI47_03695: IAI47_03695 - class II fructose-bisphosphate aldolase, at 771,538 to 772,617 _03695 Position (kb) 770 771 772Strain fitness (log2 ratio) -2 -1 0 1 2at 769.303 kb on - strand, within IAI47_03685at 769.326 kb on + strand, within IAI47_03685at 769.345 kb on + strand, within IAI47_03685at 769.345 kb on + strand, within IAI47_03685at 769.345 kb on + strand, within IAI47_03685at 769.345 kb on + strand, within IAI47_03685at 769.346 kb on - strand, within IAI47_03685at 769.350 kb on + strand, within IAI47_03685at 769.398 kb on + strand, within IAI47_03685at 769.398 kb on + strand, within IAI47_03685at 769.398 kb on + strand, within IAI47_03685at 769.398 kb on + strand, within IAI47_03685at 769.398 kb on + strand, within IAI47_03685at 769.399 kb on - strand, within IAI47_03685at 769.399 kb on - strand, within IAI47_03685at 769.399 kb on - strand, within IAI47_03685at 769.399 kb on - strand, within IAI47_03685at 769.399 kb on - strand, within IAI47_03685at 769.446 kb on - strand, within IAI47_03685at 769.494 kb on + strand, within IAI47_03685at 769.495 kb on - strand, within IAI47_03685at 769.504 kb on + strand, within IAI47_03685at 769.505 kb on - strand, within IAI47_03685at 769.505 kb on - strand, within IAI47_03685at 769.677 kb on + strand, within IAI47_03685at 769.677 kb on + strand, within IAI47_03685at 769.677 kb on + strand, within IAI47_03685at 769.678 kb on - strand, within IAI47_03685at 769.689 kb on + strand, within IAI47_03685at 769.689 kb on + strand, within IAI47_03685at 769.689 kb on + strand, within IAI47_03685at 769.689 kb on + strand, within IAI47_03685at 769.690 kb on - strand, within IAI47_03685at 769.690 kb on - strand, within IAI47_03685at 769.690 kb on - strand, within IAI47_03685at 769.777 kb on + strand, within IAI47_03685at 769.778 kb on - strand, within IAI47_03685at 769.834 kb on - strand, within IAI47_03685at 769.918 kb on - strand, within IAI47_03685at 769.953 kb on + strand, within IAI47_03685at 769.977 kb on + strand, within IAI47_03685at 769.977 kb on + strand, within IAI47_03685at 769.977 kb on + strand, within IAI47_03685at 770.019 kb on + strand, within IAI47_03685at 770.019 kb on + strand, within IAI47_03685at 770.019 kb on + strand, within IAI47_03685at 770.021 kb on + strand, within IAI47_03685at 770.021 kb on + strand, within IAI47_03685at 770.021 kb on + strand, within IAI47_03685at 770.021 kb on + strand, within IAI47_03685at 770.021 kb on + strand, within IAI47_03685at 770.021 kb on + strand, within IAI47_03685at 770.022 kb on - strand, within IAI47_03685at 770.022 kb on - strand, within IAI47_03685at 770.030 kb on - strand, within IAI47_03685at 770.039 kb on + strand, within IAI47_03685at 770.039 kb on + strand, within IAI47_03685at 770.039 kb on + strand, within IAI47_03685at 770.045 kb on + strand, within IAI47_03685at 770.124 kb on + strandat 770.215 kb on + strandat 770.215 kb on + strandat 770.215 kb on + strandat 770.215 kb on + strandat 770.243 kb on + strandat 770.243 kb on + strandat 771.430 kb on + strandat 771.430 kb on + strandat 771.430 kb on + strandat 771.430 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2
remove
769,303 - IAI47_03685 0.10 -0.8
769,326 + IAI47_03685 0.13 -0.4
769,345 + IAI47_03685 0.14 -0.3
769,345 + IAI47_03685 0.14 +0.0
769,345 + IAI47_03685 0.14 -0.5
769,345 + IAI47_03685 0.14 -0.8
769,346 - IAI47_03685 0.15 -0.9
769,350 + IAI47_03685 0.15 -0.6
769,398 + IAI47_03685 0.20 -0.0
769,398 + IAI47_03685 0.20 -0.8
769,398 + IAI47_03685 0.20 -0.2
769,398 + IAI47_03685 0.20 +0.8
769,398 + IAI47_03685 0.20 -0.4
769,399 - IAI47_03685 0.20 +0.8
769,399 - IAI47_03685 0.20 -0.8
769,399 - IAI47_03685 0.20 -1.8
769,399 - IAI47_03685 0.20 +0.1
769,399 - IAI47_03685 0.20 +0.2
769,446 - IAI47_03685 0.24 +1.2
769,494 + IAI47_03685 0.29 +0.6
769,495 - IAI47_03685 0.29 +0.4
769,504 + IAI47_03685 0.30 -0.4
769,505 - IAI47_03685 0.30 -0.4
769,505 - IAI47_03685 0.30 +0.1
769,677 + IAI47_03685 0.47 +0.4
769,677 + IAI47_03685 0.47 +1.0
769,677 + IAI47_03685 0.47 +1.4
769,678 - IAI47_03685 0.47 +0.8
769,689 + IAI47_03685 0.48 +0.1
769,689 + IAI47_03685 0.48 -0.4
769,689 + IAI47_03685 0.48 -0.3
769,689 + IAI47_03685 0.48 -0.8
769,690 - IAI47_03685 0.48 +0.8
769,690 - IAI47_03685 0.48 -0.5
769,690 - IAI47_03685 0.48 +0.8
769,777 + IAI47_03685 0.57 +0.1
769,778 - IAI47_03685 0.57 +1.4
769,834 - IAI47_03685 0.62 +1.6
769,918 - IAI47_03685 0.71 -0.9
769,953 + IAI47_03685 0.74 -0.8
769,977 + IAI47_03685 0.76 -0.8
769,977 + IAI47_03685 0.76 -0.5
769,977 + IAI47_03685 0.76 -1.1
770,019 + IAI47_03685 0.80 -1.2
770,019 + IAI47_03685 0.80 -0.2
770,019 + IAI47_03685 0.80 -0.8
770,021 + IAI47_03685 0.81 -2.0
770,021 + IAI47_03685 0.81 +0.8
770,021 + IAI47_03685 0.81 +0.4
770,021 + IAI47_03685 0.81 +1.8
770,021 + IAI47_03685 0.81 +1.4
770,021 + IAI47_03685 0.81 +0.2
770,022 - IAI47_03685 0.81 -1.5
770,022 - IAI47_03685 0.81 +0.6
770,030 - IAI47_03685 0.82 +0.8
770,039 + IAI47_03685 0.82 +0.2
770,039 + IAI47_03685 0.82 +0.0
770,039 + IAI47_03685 0.82 +0.4
770,045 + IAI47_03685 0.83 +0.2
770,124 + +1.2
770,215 + +2.6
770,215 + -0.1
770,215 + +0.3
770,215 + -0.5
770,243 + +1.0
770,243 + +1.1
771,430 + -0.8
771,430 + -2.6
771,430 + +2.0
771,430 + +0.5

Or see this region's nucleotide sequence