Strain Fitness in Pantoea sp. MT58 around IAI47_02530

Experiment: Ying_Others16 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02525 and IAI47_02530 are separated by 14 nucleotidesIAI47_02530 and IAI47_02535 are separated by 171 nucleotides IAI47_02525: IAI47_02525 - miniconductance mechanosensitive channel MscM, at 521,673 to 525,002 _02525 IAI47_02530: IAI47_02530 - phosphatidylserine decarboxylase, at 525,017 to 525,916 _02530 IAI47_02535: IAI47_02535 - small ribosomal subunit biogenesis GTPase RsgA, at 526,088 to 527,137 _02535 Position (kb) 525 526Strain fitness (log2 ratio) -2 -1 0 1 2 3at 524.057 kb on + strand, within IAI47_02525at 524.057 kb on + strand, within IAI47_02525at 524.057 kb on + strand, within IAI47_02525at 524.058 kb on - strand, within IAI47_02525at 524.093 kb on + strand, within IAI47_02525at 524.093 kb on + strand, within IAI47_02525at 524.094 kb on - strand, within IAI47_02525at 524.094 kb on - strand, within IAI47_02525at 524.094 kb on - strand, within IAI47_02525at 524.094 kb on - strand, within IAI47_02525at 524.094 kb on - strand, within IAI47_02525at 524.117 kb on + strand, within IAI47_02525at 524.117 kb on + strand, within IAI47_02525at 524.117 kb on + strand, within IAI47_02525at 524.117 kb on + strand, within IAI47_02525at 524.117 kb on + strand, within IAI47_02525at 524.117 kb on + strand, within IAI47_02525at 524.117 kb on + strand, within IAI47_02525at 524.118 kb on - strand, within IAI47_02525at 524.118 kb on - strand, within IAI47_02525at 524.126 kb on + strand, within IAI47_02525at 524.126 kb on + strand, within IAI47_02525at 524.222 kb on + strand, within IAI47_02525at 524.319 kb on - strand, within IAI47_02525at 524.335 kb on + strand, within IAI47_02525at 524.336 kb on - strand, within IAI47_02525at 524.336 kb on - strand, within IAI47_02525at 524.336 kb on - strand, within IAI47_02525at 524.336 kb on - strand, within IAI47_02525at 524.336 kb on - strand, within IAI47_02525at 524.336 kb on - strand, within IAI47_02525at 524.336 kb on - strand, within IAI47_02525at 524.336 kb on - strand, within IAI47_02525at 524.336 kb on - strand, within IAI47_02525at 524.336 kb on - strand, within IAI47_02525at 524.402 kb on + strand, within IAI47_02525at 524.447 kb on + strand, within IAI47_02525at 524.448 kb on - strand, within IAI47_02525at 524.448 kb on - strand, within IAI47_02525at 524.574 kb on - strand, within IAI47_02525at 524.658 kb on - strand, within IAI47_02525at 524.658 kb on - strand, within IAI47_02525at 524.658 kb on - strand, within IAI47_02525at 524.791 kb on + strandat 524.791 kb on + strandat 524.791 kb on + strandat 524.792 kb on - strandat 524.792 kb on - strandat 524.792 kb on - strandat 524.792 kb on - strandat 524.838 kb on + strandat 525.932 kb on - strandat 525.932 kb on - strandat 525.947 kb on - strandat 525.947 kb on - strandat 525.966 kb on - strandat 525.966 kb on - strandat 525.966 kb on - strandat 525.991 kb on + strandat 525.992 kb on - strandat 525.992 kb on - strandat 525.992 kb on - strandat 525.992 kb on - strandat 525.994 kb on - strandat 526.080 kb on + strandat 526.080 kb on + strandat 526.081 kb on - strandat 526.081 kb on - strandat 526.081 kb on - strandat 526.082 kb on + strandat 526.090 kb on - strandat 526.090 kb on - strandat 526.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2
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524,057 + IAI47_02525 0.72 +0.8
524,057 + IAI47_02525 0.72 +0.2
524,057 + IAI47_02525 0.72 -0.9
524,058 - IAI47_02525 0.72 -0.1
524,093 + IAI47_02525 0.73 +0.8
524,093 + IAI47_02525 0.73 +0.6
524,094 - IAI47_02525 0.73 -0.9
524,094 - IAI47_02525 0.73 +0.2
524,094 - IAI47_02525 0.73 +1.2
524,094 - IAI47_02525 0.73 -0.3
524,094 - IAI47_02525 0.73 -0.3
524,117 + IAI47_02525 0.73 +0.8
524,117 + IAI47_02525 0.73 +1.2
524,117 + IAI47_02525 0.73 +0.0
524,117 + IAI47_02525 0.73 +0.8
524,117 + IAI47_02525 0.73 -0.5
524,117 + IAI47_02525 0.73 +0.5
524,117 + IAI47_02525 0.73 +1.4
524,118 - IAI47_02525 0.73 -0.2
524,118 - IAI47_02525 0.73 -1.2
524,126 + IAI47_02525 0.74 +0.1
524,126 + IAI47_02525 0.74 -0.5
524,222 + IAI47_02525 0.77 +0.5
524,319 - IAI47_02525 0.79 -0.4
524,335 + IAI47_02525 0.80 -0.8
524,336 - IAI47_02525 0.80 +0.2
524,336 - IAI47_02525 0.80 -1.2
524,336 - IAI47_02525 0.80 +0.6
524,336 - IAI47_02525 0.80 -1.3
524,336 - IAI47_02525 0.80 +1.6
524,336 - IAI47_02525 0.80 -1.5
524,336 - IAI47_02525 0.80 -0.8
524,336 - IAI47_02525 0.80 -0.4
524,336 - IAI47_02525 0.80 +0.2
524,336 - IAI47_02525 0.80 +0.8
524,402 + IAI47_02525 0.82 +0.1
524,447 + IAI47_02525 0.83 -0.8
524,448 - IAI47_02525 0.83 +0.2
524,448 - IAI47_02525 0.83 +0.5
524,574 - IAI47_02525 0.87 -0.8
524,658 - IAI47_02525 0.90 +0.1
524,658 - IAI47_02525 0.90 -1.6
524,658 - IAI47_02525 0.90 -0.8
524,791 + +0.2
524,791 + +0.3
524,791 + +0.4
524,792 - +1.2
524,792 - +0.8
524,792 - -0.8
524,792 - +1.8
524,838 + +0.4
525,932 - +0.6
525,932 - -0.1
525,947 - -0.4
525,947 - -0.0
525,966 - +0.6
525,966 - -2.0
525,966 - -1.3
525,991 + -0.3
525,992 - -0.3
525,992 - -0.9
525,992 - -0.5
525,992 - -0.2
525,994 - -1.2
526,080 + +2.8
526,080 + +0.7
526,081 - +0.5
526,081 - +0.2
526,081 - -0.2
526,082 + -0.5
526,090 - +0.8
526,090 - +0.4
526,090 - +0.6

Or see this region's nucleotide sequence