Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21865 and IAI47_21870 are separated by 156 nucleotides IAI47_21870 and IAI47_21875 are separated by 216 nucleotides
IAI47_21865: IAI47_21865 - carbohydrate porin, at 124,021 to 125,556
_21865
IAI47_21870: IAI47_21870 - aminoimidazole riboside kinase, at 125,713 to 126,639
_21870
IAI47_21875: IAI47_21875 - ParB/RepB/Spo0J family partition protein, at 126,856 to 127,827
_21875
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 124.722 kb on + strand, within IAI47_21865 at 124.739 kb on + strand, within IAI47_21865 at 124.739 kb on + strand, within IAI47_21865 at 124.739 kb on + strand, within IAI47_21865 at 124.740 kb on - strand, within IAI47_21865 at 124.740 kb on - strand, within IAI47_21865 at 124.740 kb on - strand, within IAI47_21865 at 124.740 kb on - strand, within IAI47_21865 at 124.752 kb on + strand, within IAI47_21865 at 124.782 kb on + strand, within IAI47_21865 at 124.790 kb on + strand, within IAI47_21865 at 124.791 kb on - strand, within IAI47_21865 at 124.807 kb on - strand, within IAI47_21865 at 124.807 kb on - strand, within IAI47_21865 at 124.835 kb on + strand, within IAI47_21865 at 124.835 kb on + strand, within IAI47_21865 at 124.836 kb on - strand, within IAI47_21865 at 124.836 kb on - strand, within IAI47_21865 at 124.852 kb on - strand, within IAI47_21865 at 124.899 kb on + strand, within IAI47_21865 at 124.900 kb on - strand, within IAI47_21865 at 124.900 kb on - strand, within IAI47_21865 at 124.900 kb on - strand, within IAI47_21865 at 124.932 kb on + strand, within IAI47_21865 at 124.932 kb on + strand, within IAI47_21865 at 124.932 kb on + strand, within IAI47_21865 at 124.933 kb on - strand, within IAI47_21865 at 124.938 kb on + strand, within IAI47_21865 at 124.938 kb on + strand, within IAI47_21865 at 124.939 kb on - strand, within IAI47_21865 at 124.939 kb on - strand, within IAI47_21865 at 124.939 kb on - strand, within IAI47_21865 at 124.939 kb on - strand, within IAI47_21865 at 125.029 kb on - strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.030 kb on + strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.031 kb on - strand, within IAI47_21865 at 125.073 kb on + strand, within IAI47_21865 at 125.073 kb on + strand, within IAI47_21865 at 125.073 kb on + strand, within IAI47_21865 at 125.074 kb on - strand, within IAI47_21865 at 125.074 kb on - strand, within IAI47_21865 at 125.074 kb on - strand, within IAI47_21865 at 125.074 kb on - strand, within IAI47_21865 at 125.074 kb on - strand, within IAI47_21865 at 125.082 kb on + strand, within IAI47_21865 at 125.082 kb on + strand, within IAI47_21865 at 125.083 kb on - strand, within IAI47_21865 at 125.097 kb on + strand, within IAI47_21865 at 125.097 kb on + strand, within IAI47_21865 at 125.097 kb on + strand, within IAI47_21865 at 125.097 kb on + strand, within IAI47_21865 at 125.097 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.120 kb on + strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.121 kb on - strand, within IAI47_21865 at 125.125 kb on - strand, within IAI47_21865 at 125.125 kb on - strand, within IAI47_21865 at 125.125 kb on - strand, within IAI47_21865 at 125.241 kb on - strand, within IAI47_21865 at 125.316 kb on + strand, within IAI47_21865 at 125.316 kb on + strand, within IAI47_21865 at 125.317 kb on - strand, within IAI47_21865 at 125.317 kb on - strand, within IAI47_21865 at 125.317 kb on - strand, within IAI47_21865 at 125.338 kb on + strand, within IAI47_21865 at 125.339 kb on - strand, within IAI47_21865 at 125.339 kb on - strand, within IAI47_21865 at 125.339 kb on - strand, within IAI47_21865 at 125.475 kb on + strand at 125.475 kb on + strand at 125.475 kb on + strand at 125.475 kb on + strand at 125.476 kb on - strand at 125.476 kb on - strand at 125.508 kb on + strand at 125.508 kb on - strand at 125.509 kb on - strand at 125.509 kb on - strand at 125.518 kb on + strand at 125.518 kb on + strand at 125.518 kb on + strand at 125.518 kb on + strand at 125.518 kb on + strand at 125.519 kb on - strand at 125.519 kb on - strand at 125.521 kb on + strand at 125.522 kb on - strand at 125.522 kb on - strand at 125.522 kb on - strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.579 kb on + strand at 125.580 kb on - strand at 125.580 kb on - strand at 125.580 kb on - strand at 125.580 kb on - strand at 125.623 kb on + strand at 125.624 kb on - strand at 125.660 kb on - strand at 125.683 kb on + strand at 125.683 kb on + strand at 125.683 kb on + strand at 125.684 kb on - strand at 125.684 kb on - strand at 125.684 kb on - strand at 125.715 kb on - strand at 125.869 kb on + strand, within IAI47_21870 at 125.870 kb on - strand, within IAI47_21870 at 125.870 kb on - strand, within IAI47_21870 at 125.954 kb on + strand, within IAI47_21870 at 125.993 kb on - strand, within IAI47_21870 at 125.993 kb on - strand, within IAI47_21870 at 125.993 kb on - strand, within IAI47_21870 at 125.993 kb on - strand, within IAI47_21870 at 125.995 kb on + strand, within IAI47_21870 at 125.995 kb on + strand, within IAI47_21870 at 125.996 kb on - strand, within IAI47_21870 at 125.996 kb on - strand, within IAI47_21870 at 126.003 kb on + strand, within IAI47_21870 at 126.099 kb on + strand, within IAI47_21870 at 126.100 kb on - strand, within IAI47_21870 at 126.106 kb on + strand, within IAI47_21870 at 126.106 kb on + strand, within IAI47_21870 at 126.106 kb on + strand, within IAI47_21870 at 126.106 kb on + strand, within IAI47_21870 at 126.106 kb on + strand, within IAI47_21870 at 126.107 kb on - strand, within IAI47_21870 at 126.107 kb on - strand, within IAI47_21870 at 126.220 kb on - strand, within IAI47_21870 at 126.250 kb on + strand, within IAI47_21870 at 126.250 kb on + strand, within IAI47_21870 at 126.342 kb on + strand, within IAI47_21870 at 126.342 kb on + strand, within IAI47_21870 at 126.342 kb on + strand, within IAI47_21870 at 126.342 kb on + strand, within IAI47_21870 at 126.343 kb on - strand, within IAI47_21870 at 126.343 kb on - strand, within IAI47_21870 at 126.343 kb on - strand, within IAI47_21870 at 126.343 kb on - strand, within IAI47_21870 at 126.348 kb on + strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.349 kb on - strand, within IAI47_21870 at 126.422 kb on + strand, within IAI47_21870 at 126.422 kb on + strand, within IAI47_21870 at 126.422 kb on + strand, within IAI47_21870 at 126.423 kb on - strand, within IAI47_21870 at 126.423 kb on - strand, within IAI47_21870 at 126.423 kb on - strand, within IAI47_21870 at 126.423 kb on - strand, within IAI47_21870 at 126.429 kb on + strand, within IAI47_21870 at 126.429 kb on + strand, within IAI47_21870 at 126.430 kb on - strand, within IAI47_21870 at 126.462 kb on + strand, within IAI47_21870 at 126.463 kb on - strand, within IAI47_21870 at 126.498 kb on + strand, within IAI47_21870 at 126.498 kb on + strand, within IAI47_21870 at 126.543 kb on + strand, within IAI47_21870 at 126.544 kb on - strand, within IAI47_21870 at 126.625 kb on + strand at 126.625 kb on + strand at 126.625 kb on + strand at 126.625 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.639 kb on + strand at 126.640 kb on - strand at 126.640 kb on - strand at 126.640 kb on - strand at 126.640 kb on - strand at 126.640 kb on - strand at 126.640 kb on - strand at 126.640 kb on - strand at 126.659 kb on - strand at 126.685 kb on + strand at 126.691 kb on + strand at 126.691 kb on + strand at 126.691 kb on + strand at 126.692 kb on - strand at 126.713 kb on + strand at 126.713 kb on + strand at 126.713 kb on + strand at 126.714 kb on - strand at 126.717 kb on - strand at 126.776 kb on + strand at 126.785 kb on + strand at 126.785 kb on + strand at 126.785 kb on + strand at 126.785 kb on + strand at 126.785 kb on + strand at 126.786 kb on - strand at 126.786 kb on - strand at 126.786 kb on - strand at 126.786 kb on - strand at 126.786 kb on - strand at 126.786 kb on - strand at 126.786 kb on - strand at 126.808 kb on + strand at 126.844 kb on - strand at 126.844 kb on - strand at 126.857 kb on + strand at 126.857 kb on + strand at 126.857 kb on + strand at 126.857 kb on + strand at 126.857 kb on + strand at 126.858 kb on - strand at 126.858 kb on - strand at 126.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 124,722 + IAI47_21865 0.46 -1.0 124,739 + IAI47_21865 0.47 +1.4 124,739 + IAI47_21865 0.47 +0.8 124,739 + IAI47_21865 0.47 +1.3 124,740 - IAI47_21865 0.47 +1.8 124,740 - IAI47_21865 0.47 -0.0 124,740 - IAI47_21865 0.47 +2.4 124,740 - IAI47_21865 0.47 -1.2 124,752 + IAI47_21865 0.48 -0.8 124,782 + IAI47_21865 0.50 +0.8 124,790 + IAI47_21865 0.50 -2.4 124,791 - IAI47_21865 0.50 +0.8 124,807 - IAI47_21865 0.51 -0.5 124,807 - IAI47_21865 0.51 -0.1 124,835 + IAI47_21865 0.53 -0.8 124,835 + IAI47_21865 0.53 +1.1 124,836 - IAI47_21865 0.53 -0.6 124,836 - IAI47_21865 0.53 +0.6 124,852 - IAI47_21865 0.54 -0.7 124,899 + IAI47_21865 0.57 -1.5 124,900 - IAI47_21865 0.57 -0.1 124,900 - IAI47_21865 0.57 -0.5 124,900 - IAI47_21865 0.57 -0.5 124,932 + IAI47_21865 0.59 +0.1 124,932 + IAI47_21865 0.59 +0.5 124,932 + IAI47_21865 0.59 -1.7 124,933 - IAI47_21865 0.59 +0.5 124,938 + IAI47_21865 0.60 +1.0 124,938 + IAI47_21865 0.60 +0.8 124,939 - IAI47_21865 0.60 -0.2 124,939 - IAI47_21865 0.60 +0.3 124,939 - IAI47_21865 0.60 +1.5 124,939 - IAI47_21865 0.60 +0.2 125,029 - IAI47_21865 0.66 +0.8 125,030 + IAI47_21865 0.66 +0.6 125,030 + IAI47_21865 0.66 +0.4 125,030 + IAI47_21865 0.66 -0.5 125,030 + IAI47_21865 0.66 -0.3 125,030 + IAI47_21865 0.66 +0.6 125,030 + IAI47_21865 0.66 +1.2 125,030 + IAI47_21865 0.66 -1.1 125,030 + IAI47_21865 0.66 +1.0 125,031 - IAI47_21865 0.66 -1.3 125,031 - IAI47_21865 0.66 -0.4 125,031 - IAI47_21865 0.66 -0.2 125,031 - IAI47_21865 0.66 +1.8 125,031 - IAI47_21865 0.66 +0.4 125,031 - IAI47_21865 0.66 +0.1 125,031 - IAI47_21865 0.66 -0.4 125,031 - IAI47_21865 0.66 +0.6 125,073 + IAI47_21865 0.68 -0.8 125,073 + IAI47_21865 0.68 +2.4 125,073 + IAI47_21865 0.68 +1.1 125,074 - IAI47_21865 0.69 -0.4 125,074 - IAI47_21865 0.69 -1.0 125,074 - IAI47_21865 0.69 -1.3 125,074 - IAI47_21865 0.69 -1.1 125,074 - IAI47_21865 0.69 -0.2 125,082 + IAI47_21865 0.69 -1.7 125,082 + IAI47_21865 0.69 +0.7 125,083 - IAI47_21865 0.69 +1.6 125,097 + IAI47_21865 0.70 +0.8 125,097 + IAI47_21865 0.70 +0.8 125,097 + IAI47_21865 0.70 +1.8 125,097 + IAI47_21865 0.70 +0.4 125,097 + IAI47_21865 0.70 +1.2 125,120 + IAI47_21865 0.72 +3.1 125,120 + IAI47_21865 0.72 +1.2 125,120 + IAI47_21865 0.72 -1.4 125,120 + IAI47_21865 0.72 +0.6 125,120 + IAI47_21865 0.72 +1.8 125,120 + IAI47_21865 0.72 -0.2 125,120 + IAI47_21865 0.72 -0.2 125,120 + IAI47_21865 0.72 +1.5 125,120 + IAI47_21865 0.72 +2.1 125,120 + IAI47_21865 0.72 -1.0 125,120 + IAI47_21865 0.72 -0.5 125,120 + IAI47_21865 0.72 -0.8 125,120 + IAI47_21865 0.72 +0.8 125,120 + IAI47_21865 0.72 -0.8 125,120 + IAI47_21865 0.72 -0.2 125,120 + IAI47_21865 0.72 +0.1 125,121 - IAI47_21865 0.72 +1.8 125,121 - IAI47_21865 0.72 -1.1 125,121 - IAI47_21865 0.72 +0.8 125,121 - IAI47_21865 0.72 +1.5 125,121 - IAI47_21865 0.72 +1.6 125,121 - IAI47_21865 0.72 +0.8 125,121 - IAI47_21865 0.72 -2.4 125,121 - IAI47_21865 0.72 +0.0 125,121 - IAI47_21865 0.72 -2.2 125,121 - IAI47_21865 0.72 -0.8 125,121 - IAI47_21865 0.72 +0.6 125,121 - IAI47_21865 0.72 +1.4 125,121 - IAI47_21865 0.72 -1.5 125,121 - IAI47_21865 0.72 -0.7 125,125 - IAI47_21865 0.72 +1.0 125,125 - IAI47_21865 0.72 +0.8 125,125 - IAI47_21865 0.72 +0.5 125,241 - IAI47_21865 0.79 -0.5 125,316 + IAI47_21865 0.84 +1.4 125,316 + IAI47_21865 0.84 -0.6 125,317 - IAI47_21865 0.84 -0.5 125,317 - IAI47_21865 0.84 +0.9 125,317 - IAI47_21865 0.84 +0.4 125,338 + IAI47_21865 0.86 -0.2 125,339 - IAI47_21865 0.86 +1.4 125,339 - IAI47_21865 0.86 +0.1 125,339 - IAI47_21865 0.86 +0.2 125,475 + -1.2 125,475 + +0.0 125,475 + -0.8 125,475 + +0.1 125,476 - +0.8 125,476 - +0.1 125,508 + -0.0 125,508 - +0.4 125,509 - +0.2 125,509 - -0.2 125,518 + +0.9 125,518 + -0.5 125,518 + -0.0 125,518 + +0.5 125,518 + +2.1 125,519 - +0.0 125,519 - +2.4 125,521 + -1.7 125,522 - -2.7 125,522 - +0.8 125,522 - +0.8 125,579 + +0.1 125,579 + -0.2 125,579 + -0.2 125,579 + -0.6 125,579 + +1.0 125,579 + +1.4 125,579 + -1.0 125,579 + -1.2 125,579 + -0.2 125,580 - -0.2 125,580 - +1.3 125,580 - -1.2 125,580 - -0.7 125,623 + +0.6 125,624 - +1.5 125,660 - -0.2 125,683 + +1.5 125,683 + -1.1 125,683 + -0.0 125,684 - -0.5 125,684 - +1.2 125,684 - -0.2 125,715 - -0.6 125,869 + IAI47_21870 0.17 +0.3 125,870 - IAI47_21870 0.17 +1.4 125,870 - IAI47_21870 0.17 -2.7 125,954 + IAI47_21870 0.26 -0.2 125,993 - IAI47_21870 0.30 +0.8 125,993 - IAI47_21870 0.30 +1.0 125,993 - IAI47_21870 0.30 -0.2 125,993 - IAI47_21870 0.30 +0.4 125,995 + IAI47_21870 0.30 +0.3 125,995 + IAI47_21870 0.30 +0.5 125,996 - IAI47_21870 0.31 -1.8 125,996 - IAI47_21870 0.31 +0.2 126,003 + IAI47_21870 0.31 -2.4 126,099 + IAI47_21870 0.42 +0.2 126,100 - IAI47_21870 0.42 +0.8 126,106 + IAI47_21870 0.42 +0.8 126,106 + IAI47_21870 0.42 -0.6 126,106 + IAI47_21870 0.42 -1.5 126,106 + IAI47_21870 0.42 -1.2 126,106 + IAI47_21870 0.42 +0.1 126,107 - IAI47_21870 0.43 +0.4 126,107 - IAI47_21870 0.43 -0.1 126,220 - IAI47_21870 0.55 -0.6 126,250 + IAI47_21870 0.58 +1.5 126,250 + IAI47_21870 0.58 +0.8 126,342 + IAI47_21870 0.68 +0.5 126,342 + IAI47_21870 0.68 +0.3 126,342 + IAI47_21870 0.68 -0.6 126,342 + IAI47_21870 0.68 +0.4 126,343 - IAI47_21870 0.68 -0.6 126,343 - IAI47_21870 0.68 -0.0 126,343 - IAI47_21870 0.68 +1.1 126,343 - IAI47_21870 0.68 +0.7 126,348 + IAI47_21870 0.69 -1.8 126,349 - IAI47_21870 0.69 +1.1 126,349 - IAI47_21870 0.69 +0.5 126,349 - IAI47_21870 0.69 -1.0 126,349 - IAI47_21870 0.69 -0.8 126,349 - IAI47_21870 0.69 -1.7 126,349 - IAI47_21870 0.69 -0.5 126,349 - IAI47_21870 0.69 -0.2 126,422 + IAI47_21870 0.76 +0.3 126,422 + IAI47_21870 0.76 -0.0 126,422 + IAI47_21870 0.76 +0.4 126,423 - IAI47_21870 0.77 +3.1 126,423 - IAI47_21870 0.77 -0.4 126,423 - IAI47_21870 0.77 +1.1 126,423 - IAI47_21870 0.77 -0.8 126,429 + IAI47_21870 0.77 +2.4 126,429 + IAI47_21870 0.77 +0.6 126,430 - IAI47_21870 0.77 +0.4 126,462 + IAI47_21870 0.81 -1.0 126,463 - IAI47_21870 0.81 +0.8 126,498 + IAI47_21870 0.85 +0.4 126,498 + IAI47_21870 0.85 +0.2 126,543 + IAI47_21870 0.90 -1.5 126,544 - IAI47_21870 0.90 -0.8 126,625 + -1.5 126,625 + +0.3 126,625 + +0.8 126,625 + -0.4 126,639 + -1.2 126,639 + -0.8 126,639 + +0.3 126,639 + +0.3 126,639 + +1.7 126,639 + +0.5 126,639 + +0.1 126,639 + -0.2 126,639 + -0.1 126,640 - +0.3 126,640 - -0.1 126,640 - -0.2 126,640 - -0.2 126,640 - +0.4 126,640 - +0.1 126,640 - -0.6 126,659 - -0.2 126,685 + -0.4 126,691 + +0.1 126,691 + +0.2 126,691 + -0.2 126,692 - +0.3 126,713 + -0.9 126,713 + +0.4 126,713 + -0.2 126,714 - +0.3 126,717 - +0.8 126,776 + -0.2 126,785 + -0.2 126,785 + -0.3 126,785 + +0.8 126,785 + -0.8 126,785 + +0.9 126,786 - +1.0 126,786 - -1.2 126,786 - -0.4 126,786 - -0.5 126,786 - -0.2 126,786 - +0.2 126,786 - -0.1 126,808 + -0.0 126,844 - -0.6 126,844 - +0.5 126,857 + -0.9 126,857 + -0.2 126,857 + -1.6 126,857 + +0.4 126,857 + +0.2 126,858 - -1.2 126,858 - -1.0 126,868 - -0.8
Or see this region's nucleotide sequence