Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20010 and IAI47_20015 are separated by 417 nucleotides IAI47_20015 and IAI47_20020 are separated by 19 nucleotides
IAI47_20010: IAI47_20010 - GntR family transcriptional regulator, at 234,187 to 234,921
_20010
IAI47_20015: IAI47_20015 - MsnO8 family LLM class oxidoreductase, at 235,339 to 236,337
_20015
IAI47_20020: IAI47_20020 - amidohydrolase, at 236,357 to 237,508
_20020
Position (kb) 235
236
237 Strain fitness (log2 ratio) -2
-1
0
1
2 at 234.345 kb on + strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.345 kb on + strand, within IAI47_20010 at 234.346 kb on - strand, within IAI47_20010 at 234.346 kb on - strand, within IAI47_20010 at 234.346 kb on - strand at 234.346 kb on - strand, within IAI47_20010 at 234.346 kb on - strand, within IAI47_20010 at 234.353 kb on + strand, within IAI47_20010 at 234.368 kb on + strand, within IAI47_20010 at 234.368 kb on + strand, within IAI47_20010 at 234.368 kb on + strand, within IAI47_20010 at 234.369 kb on - strand, within IAI47_20010 at 234.369 kb on - strand, within IAI47_20010 at 234.371 kb on - strand, within IAI47_20010 at 234.378 kb on - strand, within IAI47_20010 at 234.413 kb on + strand, within IAI47_20010 at 234.413 kb on + strand, within IAI47_20010 at 234.414 kb on - strand, within IAI47_20010 at 234.414 kb on - strand, within IAI47_20010 at 234.417 kb on + strand, within IAI47_20010 at 234.418 kb on - strand, within IAI47_20010 at 234.511 kb on - strand, within IAI47_20010 at 234.627 kb on + strand, within IAI47_20010 at 234.628 kb on - strand, within IAI47_20010 at 234.628 kb on - strand, within IAI47_20010 at 234.676 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.688 kb on + strand, within IAI47_20010 at 234.689 kb on - strand, within IAI47_20010 at 234.689 kb on - strand, within IAI47_20010 at 234.689 kb on - strand, within IAI47_20010 at 234.694 kb on + strand, within IAI47_20010 at 234.694 kb on + strand, within IAI47_20010 at 234.694 kb on + strand, within IAI47_20010 at 234.695 kb on - strand, within IAI47_20010 at 234.695 kb on - strand, within IAI47_20010 at 234.696 kb on + strand, within IAI47_20010 at 234.696 kb on + strand, within IAI47_20010 at 234.697 kb on - strand, within IAI47_20010 at 234.715 kb on - strand, within IAI47_20010 at 234.715 kb on - strand, within IAI47_20010 at 234.765 kb on + strand, within IAI47_20010 at 234.766 kb on - strand, within IAI47_20010 at 234.777 kb on + strand, within IAI47_20010 at 234.777 kb on + strand, within IAI47_20010 at 234.777 kb on + strand, within IAI47_20010 at 234.778 kb on - strand, within IAI47_20010 at 234.778 kb on - strand, within IAI47_20010 at 234.782 kb on + strand, within IAI47_20010 at 234.787 kb on - strand, within IAI47_20010 at 234.787 kb on - strand, within IAI47_20010 at 234.832 kb on + strand, within IAI47_20010 at 234.919 kb on + strand at 234.924 kb on - strand at 234.929 kb on - strand at 234.944 kb on + strand at 234.944 kb on + strand at 234.944 kb on + strand at 234.945 kb on - strand at 234.969 kb on + strand at 234.969 kb on + strand at 234.969 kb on + strand at 234.969 kb on + strand at 234.969 kb on + strand at 234.970 kb on - strand at 234.970 kb on - strand at 234.975 kb on + strand at 234.975 kb on + strand at 234.976 kb on - strand at 234.979 kb on + strand at 234.980 kb on - strand at 235.038 kb on - strand at 235.098 kb on + strand at 235.099 kb on - strand at 235.099 kb on - strand at 235.099 kb on - strand at 235.156 kb on + strand at 235.157 kb on - strand at 235.183 kb on + strand at 235.183 kb on + strand at 235.184 kb on - strand at 235.184 kb on - strand at 235.184 kb on - strand at 235.187 kb on - strand at 235.187 kb on - strand at 235.220 kb on + strand at 235.220 kb on + strand at 235.255 kb on - strand at 235.261 kb on + strand at 235.268 kb on + strand at 235.269 kb on + strand at 235.269 kb on + strand at 235.269 kb on + strand at 235.280 kb on - strand at 235.285 kb on + strand at 235.322 kb on + strand at 235.346 kb on - strand at 235.361 kb on + strand at 235.365 kb on + strand at 235.365 kb on + strand at 235.365 kb on + strand at 235.365 kb on + strand at 235.366 kb on - strand at 235.366 kb on - strand at 235.366 kb on - strand at 235.366 kb on - strand at 235.450 kb on + strand, within IAI47_20015 at 235.450 kb on + strand, within IAI47_20015 at 235.517 kb on + strand, within IAI47_20015 at 235.517 kb on + strand, within IAI47_20015 at 235.518 kb on - strand, within IAI47_20015 at 235.518 kb on - strand, within IAI47_20015 at 235.518 kb on - strand, within IAI47_20015 at 235.518 kb on - strand, within IAI47_20015 at 235.548 kb on + strand, within IAI47_20015 at 235.548 kb on + strand, within IAI47_20015 at 235.585 kb on + strand, within IAI47_20015 at 235.585 kb on + strand, within IAI47_20015 at 235.585 kb on + strand, within IAI47_20015 at 235.586 kb on - strand, within IAI47_20015 at 235.596 kb on + strand, within IAI47_20015 at 235.596 kb on + strand, within IAI47_20015 at 235.596 kb on + strand, within IAI47_20015 at 235.596 kb on + strand, within IAI47_20015 at 235.597 kb on - strand, within IAI47_20015 at 235.597 kb on - strand, within IAI47_20015 at 235.597 kb on - strand, within IAI47_20015 at 235.597 kb on - strand, within IAI47_20015 at 235.597 kb on - strand, within IAI47_20015 at 235.644 kb on + strand, within IAI47_20015 at 235.644 kb on + strand, within IAI47_20015 at 235.659 kb on - strand, within IAI47_20015 at 235.659 kb on - strand, within IAI47_20015 at 235.680 kb on - strand, within IAI47_20015 at 235.741 kb on - strand, within IAI47_20015 at 235.741 kb on - strand, within IAI47_20015 at 235.761 kb on + strand, within IAI47_20015 at 235.762 kb on - strand, within IAI47_20015 at 235.787 kb on - strand, within IAI47_20015 at 235.806 kb on - strand, within IAI47_20015 at 235.938 kb on - strand, within IAI47_20015 at 235.952 kb on + strand, within IAI47_20015 at 235.952 kb on + strand, within IAI47_20015 at 235.953 kb on - strand, within IAI47_20015 at 235.956 kb on + strand, within IAI47_20015 at 235.957 kb on - strand, within IAI47_20015 at 236.000 kb on + strand, within IAI47_20015 at 236.001 kb on - strand, within IAI47_20015 at 236.001 kb on - strand, within IAI47_20015 at 236.125 kb on + strand, within IAI47_20015 at 236.125 kb on + strand, within IAI47_20015 at 236.125 kb on + strand, within IAI47_20015 at 236.125 kb on + strand, within IAI47_20015 at 236.125 kb on + strand, within IAI47_20015 at 236.125 kb on + strand, within IAI47_20015 at 236.126 kb on - strand, within IAI47_20015 at 236.126 kb on - strand, within IAI47_20015 at 236.152 kb on + strand, within IAI47_20015 at 236.152 kb on + strand, within IAI47_20015 at 236.159 kb on + strand, within IAI47_20015 at 236.160 kb on - strand, within IAI47_20015 at 236.160 kb on - strand, within IAI47_20015 at 236.183 kb on + strand, within IAI47_20015 at 236.183 kb on + strand, within IAI47_20015 at 236.183 kb on + strand, within IAI47_20015 at 236.184 kb on - strand, within IAI47_20015 at 236.232 kb on + strand, within IAI47_20015 at 236.233 kb on - strand, within IAI47_20015 at 236.233 kb on - strand, within IAI47_20015 at 236.313 kb on + strand at 236.401 kb on + strand at 236.401 kb on + strand at 236.401 kb on + strand at 236.401 kb on + strand at 236.401 kb on + strand at 236.401 kb on + strand at 236.402 kb on - strand at 236.402 kb on - strand at 236.402 kb on - strand at 236.402 kb on - strand at 236.402 kb on - strand at 236.402 kb on - strand at 236.700 kb on + strand, within IAI47_20020 at 236.700 kb on + strand, within IAI47_20020 at 236.701 kb on - strand, within IAI47_20020 at 236.701 kb on - strand, within IAI47_20020 at 236.712 kb on + strand, within IAI47_20020 at 236.716 kb on + strand, within IAI47_20020 at 236.716 kb on + strand, within IAI47_20020 at 236.716 kb on + strand, within IAI47_20020 at 236.716 kb on + strand, within IAI47_20020 at 236.716 kb on + strand, within IAI47_20020 at 236.717 kb on - strand, within IAI47_20020 at 236.717 kb on - strand, within IAI47_20020 at 236.717 kb on - strand, within IAI47_20020 at 236.717 kb on - strand, within IAI47_20020 at 236.717 kb on - strand, within IAI47_20020 at 236.764 kb on + strand, within IAI47_20020 at 236.764 kb on + strand, within IAI47_20020 at 236.765 kb on - strand, within IAI47_20020 at 236.778 kb on + strand, within IAI47_20020 at 236.779 kb on - strand, within IAI47_20020 at 236.779 kb on - strand, within IAI47_20020 at 236.790 kb on + strand, within IAI47_20020 at 236.790 kb on + strand, within IAI47_20020 at 236.790 kb on + strand, within IAI47_20020 at 236.790 kb on + strand, within IAI47_20020 at 236.791 kb on - strand, within IAI47_20020 at 236.791 kb on - strand, within IAI47_20020 at 236.864 kb on + strand, within IAI47_20020 at 236.872 kb on + strand, within IAI47_20020 at 236.872 kb on + strand, within IAI47_20020 at 236.884 kb on + strand, within IAI47_20020 at 236.884 kb on + strand, within IAI47_20020 at 236.888 kb on - strand, within IAI47_20020 at 237.028 kb on + strand, within IAI47_20020 at 237.028 kb on + strand, within IAI47_20020 at 237.029 kb on - strand, within IAI47_20020 at 237.031 kb on + strand, within IAI47_20020 at 237.032 kb on - strand, within IAI47_20020 at 237.032 kb on - strand, within IAI47_20020 at 237.032 kb on - strand, within IAI47_20020 at 237.032 kb on - strand, within IAI47_20020 at 237.032 kb on - strand, within IAI47_20020 at 237.066 kb on + strand, within IAI47_20020 at 237.111 kb on + strand, within IAI47_20020 at 237.112 kb on - strand, within IAI47_20020 at 237.112 kb on - strand, within IAI47_20020 at 237.326 kb on + strand, within IAI47_20020 at 237.326 kb on + strand, within IAI47_20020
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 234,345 + IAI47_20010 0.21 +0.1 234,345 + IAI47_20010 0.21 -0.1 234,345 + IAI47_20010 0.21 -0.5 234,345 + IAI47_20010 0.21 +1.0 234,345 + IAI47_20010 0.21 -0.7 234,345 + IAI47_20010 0.21 -0.1 234,345 + IAI47_20010 0.21 -0.3 234,346 - IAI47_20010 0.22 +0.7 234,346 - IAI47_20010 0.22 -0.6 234,346 - -1.1 234,346 - IAI47_20010 0.22 +0.2 234,346 - IAI47_20010 0.22 -2.0 234,353 + IAI47_20010 0.23 -0.7 234,368 + IAI47_20010 0.25 +1.0 234,368 + IAI47_20010 0.25 +0.3 234,368 + IAI47_20010 0.25 -0.5 234,369 - IAI47_20010 0.25 +0.4 234,369 - IAI47_20010 0.25 -0.3 234,371 - IAI47_20010 0.25 -0.3 234,378 - IAI47_20010 0.26 -0.8 234,413 + IAI47_20010 0.31 +0.5 234,413 + IAI47_20010 0.31 +0.7 234,414 - IAI47_20010 0.31 -0.4 234,414 - IAI47_20010 0.31 -0.5 234,417 + IAI47_20010 0.31 +0.2 234,418 - IAI47_20010 0.31 -0.3 234,511 - IAI47_20010 0.44 +0.4 234,627 + IAI47_20010 0.60 +1.6 234,628 - IAI47_20010 0.60 -0.1 234,628 - IAI47_20010 0.60 -0.8 234,676 + IAI47_20010 0.67 +1.0 234,688 + IAI47_20010 0.68 +1.0 234,688 + IAI47_20010 0.68 +0.9 234,688 + IAI47_20010 0.68 +1.5 234,688 + IAI47_20010 0.68 -1.7 234,688 + IAI47_20010 0.68 -0.0 234,688 + IAI47_20010 0.68 -1.1 234,688 + IAI47_20010 0.68 -0.3 234,689 - IAI47_20010 0.68 -2.5 234,689 - IAI47_20010 0.68 +0.3 234,689 - IAI47_20010 0.68 +0.6 234,694 + IAI47_20010 0.69 +0.5 234,694 + IAI47_20010 0.69 -1.3 234,694 + IAI47_20010 0.69 -0.1 234,695 - IAI47_20010 0.69 +0.9 234,695 - IAI47_20010 0.69 +0.7 234,696 + IAI47_20010 0.69 +0.1 234,696 + IAI47_20010 0.69 -0.4 234,697 - IAI47_20010 0.69 +1.7 234,715 - IAI47_20010 0.72 -0.9 234,715 - IAI47_20010 0.72 +0.0 234,765 + IAI47_20010 0.79 -0.1 234,766 - IAI47_20010 0.79 +0.1 234,777 + IAI47_20010 0.80 -0.5 234,777 + IAI47_20010 0.80 +0.3 234,777 + IAI47_20010 0.80 -0.6 234,778 - IAI47_20010 0.80 +0.2 234,778 - IAI47_20010 0.80 -2.1 234,782 + IAI47_20010 0.81 +0.5 234,787 - IAI47_20010 0.82 -0.2 234,787 - IAI47_20010 0.82 -0.9 234,832 + IAI47_20010 0.88 -0.6 234,919 + -0.2 234,924 - +1.1 234,929 - +0.1 234,944 + -0.3 234,944 + -0.9 234,944 + -0.5 234,945 - +0.5 234,969 + +0.7 234,969 + +1.0 234,969 + -0.9 234,969 + -0.9 234,969 + +0.7 234,970 - +0.1 234,970 - +0.7 234,975 + +1.3 234,975 + +0.5 234,976 - -0.3 234,979 + -0.8 234,980 - -0.6 235,038 - +0.7 235,098 + +1.3 235,099 - -1.8 235,099 - -1.3 235,099 - -0.2 235,156 + +0.7 235,157 - +0.2 235,183 + -0.1 235,183 + +0.1 235,184 - +1.2 235,184 - -0.3 235,184 - -1.2 235,187 - -0.5 235,187 - +0.3 235,220 + +0.3 235,220 + +0.0 235,255 - +1.4 235,261 + +0.5 235,268 + +0.8 235,269 + -1.5 235,269 + -0.3 235,269 + +0.1 235,280 - -0.2 235,285 + -1.4 235,322 + +0.0 235,346 - -0.9 235,361 + -0.9 235,365 + +1.0 235,365 + +0.7 235,365 + -1.1 235,365 + -0.3 235,366 - +0.9 235,366 - +1.7 235,366 - +1.4 235,366 - -0.1 235,450 + IAI47_20015 0.11 +1.7 235,450 + IAI47_20015 0.11 +0.4 235,517 + IAI47_20015 0.18 -2.1 235,517 + IAI47_20015 0.18 -1.0 235,518 - IAI47_20015 0.18 +1.3 235,518 - IAI47_20015 0.18 -1.3 235,518 - IAI47_20015 0.18 -0.1 235,518 - IAI47_20015 0.18 +1.1 235,548 + IAI47_20015 0.21 +0.7 235,548 + IAI47_20015 0.21 -2.5 235,585 + IAI47_20015 0.25 +0.1 235,585 + IAI47_20015 0.25 +0.7 235,585 + IAI47_20015 0.25 -0.2 235,586 - IAI47_20015 0.25 -0.1 235,596 + IAI47_20015 0.26 +0.4 235,596 + IAI47_20015 0.26 +2.1 235,596 + IAI47_20015 0.26 +0.4 235,596 + IAI47_20015 0.26 -0.1 235,597 - IAI47_20015 0.26 -1.2 235,597 - IAI47_20015 0.26 +1.1 235,597 - IAI47_20015 0.26 +0.7 235,597 - IAI47_20015 0.26 -0.1 235,597 - IAI47_20015 0.26 +0.1 235,644 + IAI47_20015 0.31 -1.0 235,644 + IAI47_20015 0.31 -0.1 235,659 - IAI47_20015 0.32 +0.4 235,659 - IAI47_20015 0.32 +0.7 235,680 - IAI47_20015 0.34 -2.6 235,741 - IAI47_20015 0.40 -1.3 235,741 - IAI47_20015 0.40 -0.8 235,761 + IAI47_20015 0.42 -0.8 235,762 - IAI47_20015 0.42 -0.1 235,787 - IAI47_20015 0.45 -1.9 235,806 - IAI47_20015 0.47 +0.0 235,938 - IAI47_20015 0.60 +0.5 235,952 + IAI47_20015 0.61 +0.7 235,952 + IAI47_20015 0.61 -0.5 235,953 - IAI47_20015 0.61 +0.8 235,956 + IAI47_20015 0.62 -0.5 235,957 - IAI47_20015 0.62 +1.0 236,000 + IAI47_20015 0.66 -0.9 236,001 - IAI47_20015 0.66 +0.3 236,001 - IAI47_20015 0.66 +0.9 236,125 + IAI47_20015 0.79 -1.6 236,125 + IAI47_20015 0.79 +0.1 236,125 + IAI47_20015 0.79 +0.2 236,125 + IAI47_20015 0.79 -0.5 236,125 + IAI47_20015 0.79 -0.9 236,125 + IAI47_20015 0.79 +0.0 236,126 - IAI47_20015 0.79 -0.3 236,126 - IAI47_20015 0.79 +0.9 236,152 + IAI47_20015 0.81 +0.7 236,152 + IAI47_20015 0.81 +0.7 236,159 + IAI47_20015 0.82 +0.6 236,160 - IAI47_20015 0.82 -0.5 236,160 - IAI47_20015 0.82 -0.9 236,183 + IAI47_20015 0.84 +0.4 236,183 + IAI47_20015 0.84 -1.0 236,183 + IAI47_20015 0.84 +0.2 236,184 - IAI47_20015 0.85 -0.1 236,232 + IAI47_20015 0.89 +2.3 236,233 - IAI47_20015 0.89 +0.3 236,233 - IAI47_20015 0.89 +0.4 236,313 + -0.5 236,401 + -1.2 236,401 + -1.4 236,401 + -1.5 236,401 + +2.0 236,401 + -0.3 236,401 + +1.2 236,402 - +0.1 236,402 - -0.3 236,402 - -0.3 236,402 - +0.9 236,402 - +0.7 236,402 - -0.5 236,700 + IAI47_20020 0.30 -1.3 236,700 + IAI47_20020 0.30 -0.5 236,701 - IAI47_20020 0.30 -0.3 236,701 - IAI47_20020 0.30 -0.3 236,712 + IAI47_20020 0.31 +0.2 236,716 + IAI47_20020 0.31 -0.3 236,716 + IAI47_20020 0.31 +1.7 236,716 + IAI47_20020 0.31 -0.6 236,716 + IAI47_20020 0.31 -0.5 236,716 + IAI47_20020 0.31 -0.3 236,717 - IAI47_20020 0.31 +0.2 236,717 - IAI47_20020 0.31 -0.3 236,717 - IAI47_20020 0.31 +0.7 236,717 - IAI47_20020 0.31 -0.6 236,717 - IAI47_20020 0.31 +0.1 236,764 + IAI47_20020 0.35 -0.9 236,764 + IAI47_20020 0.35 -1.5 236,765 - IAI47_20020 0.35 -2.5 236,778 + IAI47_20020 0.37 -1.3 236,779 - IAI47_20020 0.37 +0.0 236,779 - IAI47_20020 0.37 +0.8 236,790 + IAI47_20020 0.38 +1.3 236,790 + IAI47_20020 0.38 -0.4 236,790 + IAI47_20020 0.38 -0.1 236,790 + IAI47_20020 0.38 +0.5 236,791 - IAI47_20020 0.38 +0.7 236,791 - IAI47_20020 0.38 +0.3 236,864 + IAI47_20020 0.44 -0.9 236,872 + IAI47_20020 0.45 +0.8 236,872 + IAI47_20020 0.45 +1.7 236,884 + IAI47_20020 0.46 -1.9 236,884 + IAI47_20020 0.46 -0.6 236,888 - IAI47_20020 0.46 -0.2 237,028 + IAI47_20020 0.58 +2.4 237,028 + IAI47_20020 0.58 -0.7 237,029 - IAI47_20020 0.58 -2.1 237,031 + IAI47_20020 0.59 -0.7 237,032 - IAI47_20020 0.59 +0.6 237,032 - IAI47_20020 0.59 +1.1 237,032 - IAI47_20020 0.59 +0.7 237,032 - IAI47_20020 0.59 -0.3 237,032 - IAI47_20020 0.59 -1.7 237,066 + IAI47_20020 0.62 +0.1 237,111 + IAI47_20020 0.65 -0.8 237,112 - IAI47_20020 0.66 -0.3 237,112 - IAI47_20020 0.66 +0.5 237,326 + IAI47_20020 0.84 -0.1 237,326 + IAI47_20020 0.84 -2.6
Or see this region's nucleotide sequence