Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19470 and IAI47_19475 are separated by 76 nucleotides IAI47_19475 and IAI47_19480 are separated by 110 nucleotides
IAI47_19470: IAI47_19470 - GABA permease, at 122,415 to 123,830
_19470
IAI47_19475: IAI47_19475 - 4-aminobutyrate--2-oxoglutarate transaminase, at 123,907 to 125,193
_19475
IAI47_19480: IAI47_19480 - PLP-dependent aminotransferase family protein, at 125,304 to 126,794
_19480
Position (kb) 123
124
125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 122.907 kb on - strand, within IAI47_19470 at 122.907 kb on - strand, within IAI47_19470 at 122.907 kb on - strand, within IAI47_19470 at 122.907 kb on - strand, within IAI47_19470 at 122.908 kb on + strand, within IAI47_19470 at 122.908 kb on + strand, within IAI47_19470 at 122.908 kb on + strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.909 kb on - strand, within IAI47_19470 at 122.994 kb on + strand, within IAI47_19470 at 122.995 kb on - strand, within IAI47_19470 at 122.995 kb on - strand, within IAI47_19470 at 123.045 kb on + strand, within IAI47_19470 at 123.079 kb on + strand, within IAI47_19470 at 123.079 kb on + strand, within IAI47_19470 at 123.080 kb on - strand, within IAI47_19470 at 123.092 kb on + strand, within IAI47_19470 at 123.101 kb on + strand, within IAI47_19470 at 123.159 kb on + strand, within IAI47_19470 at 123.183 kb on - strand, within IAI47_19470 at 123.183 kb on - strand, within IAI47_19470 at 123.239 kb on + strand, within IAI47_19470 at 123.256 kb on + strand, within IAI47_19470 at 123.256 kb on + strand, within IAI47_19470 at 123.257 kb on - strand, within IAI47_19470 at 123.281 kb on + strand, within IAI47_19470 at 123.282 kb on - strand, within IAI47_19470 at 123.282 kb on - strand, within IAI47_19470 at 123.303 kb on + strand, within IAI47_19470 at 123.414 kb on + strand, within IAI47_19470 at 123.420 kb on + strand, within IAI47_19470 at 123.420 kb on + strand, within IAI47_19470 at 123.420 kb on + strand, within IAI47_19470 at 123.421 kb on - strand, within IAI47_19470 at 123.421 kb on - strand, within IAI47_19470 at 123.421 kb on - strand, within IAI47_19470 at 123.421 kb on - strand, within IAI47_19470 at 123.425 kb on + strand, within IAI47_19470 at 123.510 kb on + strand, within IAI47_19470 at 123.511 kb on - strand, within IAI47_19470 at 123.533 kb on - strand, within IAI47_19470 at 123.549 kb on - strand, within IAI47_19470 at 123.575 kb on + strand, within IAI47_19470 at 123.575 kb on + strand, within IAI47_19470 at 123.575 kb on + strand, within IAI47_19470 at 123.576 kb on - strand, within IAI47_19470 at 123.576 kb on - strand, within IAI47_19470 at 123.576 kb on - strand, within IAI47_19470 at 123.576 kb on - strand, within IAI47_19470 at 123.583 kb on + strand, within IAI47_19470 at 123.583 kb on + strand, within IAI47_19470 at 123.583 kb on + strand, within IAI47_19470 at 123.583 kb on + strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.584 kb on - strand, within IAI47_19470 at 123.648 kb on + strand, within IAI47_19470 at 123.648 kb on + strand, within IAI47_19470 at 123.648 kb on + strand, within IAI47_19470 at 123.649 kb on - strand, within IAI47_19470 at 123.649 kb on - strand, within IAI47_19470 at 123.649 kb on - strand, within IAI47_19470 at 123.673 kb on + strand, within IAI47_19470 at 123.674 kb on - strand, within IAI47_19470 at 123.674 kb on - strand, within IAI47_19470 at 123.764 kb on + strand at 123.764 kb on + strand at 123.764 kb on + strand at 123.764 kb on + strand at 123.764 kb on + strand at 123.764 kb on + strand at 123.765 kb on - strand at 123.765 kb on - strand at 123.832 kb on + strand at 123.832 kb on + strand at 123.832 kb on + strand at 123.833 kb on - strand at 123.833 kb on - strand at 123.880 kb on + strand at 124.126 kb on + strand, within IAI47_19475 at 124.127 kb on - strand, within IAI47_19475 at 124.127 kb on - strand, within IAI47_19475 at 124.298 kb on + strand, within IAI47_19475 at 124.298 kb on + strand, within IAI47_19475 at 124.298 kb on + strand, within IAI47_19475 at 124.298 kb on + strand, within IAI47_19475 at 124.299 kb on - strand, within IAI47_19475 at 124.299 kb on - strand, within IAI47_19475 at 124.299 kb on - strand, within IAI47_19475 at 124.299 kb on - strand, within IAI47_19475 at 124.299 kb on - strand, within IAI47_19475 at 124.438 kb on + strand, within IAI47_19475 at 124.438 kb on + strand, within IAI47_19475 at 124.438 kb on + strand, within IAI47_19475 at 124.439 kb on - strand, within IAI47_19475 at 124.439 kb on - strand, within IAI47_19475 at 124.439 kb on - strand, within IAI47_19475 at 124.439 kb on - strand, within IAI47_19475 at 124.527 kb on + strand, within IAI47_19475 at 124.527 kb on + strand, within IAI47_19475 at 124.528 kb on - strand, within IAI47_19475 at 124.528 kb on - strand, within IAI47_19475 at 124.568 kb on - strand, within IAI47_19475 at 124.568 kb on - strand, within IAI47_19475 at 124.679 kb on + strand, within IAI47_19475 at 124.727 kb on + strand, within IAI47_19475 at 124.727 kb on + strand, within IAI47_19475 at 124.727 kb on + strand, within IAI47_19475 at 124.727 kb on + strand, within IAI47_19475 at 124.728 kb on - strand, within IAI47_19475 at 124.728 kb on - strand, within IAI47_19475 at 124.767 kb on + strand, within IAI47_19475 at 124.768 kb on - strand, within IAI47_19475 at 124.847 kb on - strand, within IAI47_19475 at 124.911 kb on + strand, within IAI47_19475 at 124.935 kb on - strand, within IAI47_19475 at 124.943 kb on + strand, within IAI47_19475 at 124.943 kb on + strand, within IAI47_19475 at 124.944 kb on - strand, within IAI47_19475 at 124.944 kb on - strand, within IAI47_19475 at 124.965 kb on + strand, within IAI47_19475 at 124.971 kb on + strand, within IAI47_19475 at 124.981 kb on + strand, within IAI47_19475 at 124.982 kb on - strand, within IAI47_19475 at 125.071 kb on - strand at 125.114 kb on + strand at 125.114 kb on + strand at 125.114 kb on + strand at 125.114 kb on + strand at 125.115 kb on - strand at 125.125 kb on + strand at 125.130 kb on + strand at 125.131 kb on - strand at 125.136 kb on + strand at 125.195 kb on + strand at 125.195 kb on + strand at 125.195 kb on + strand at 125.196 kb on - strand at 125.196 kb on - strand at 125.196 kb on - strand at 125.196 kb on - strand at 125.208 kb on + strand at 125.211 kb on + strand at 125.211 kb on + strand at 125.212 kb on - strand at 125.212 kb on - strand at 125.212 kb on - strand at 125.212 kb on - strand at 125.212 kb on - strand at 125.222 kb on - strand at 125.243 kb on + strand at 125.244 kb on - strand at 125.244 kb on - strand at 125.244 kb on - strand at 125.244 kb on - strand at 125.247 kb on + strand at 125.247 kb on + strand at 125.247 kb on + strand at 125.248 kb on - strand at 125.248 kb on - strand at 125.248 kb on - strand at 125.317 kb on - strand at 125.329 kb on + strand at 125.329 kb on + strand at 125.329 kb on + strand at 125.329 kb on + strand at 125.329 kb on + strand at 125.329 kb on + strand at 125.329 kb on + strand at 125.330 kb on - strand at 125.330 kb on - strand at 125.330 kb on - strand at 125.330 kb on - strand at 125.332 kb on + strand at 125.332 kb on + strand at 125.341 kb on + strand at 125.341 kb on + strand at 125.342 kb on - strand at 125.350 kb on + strand at 125.350 kb on + strand at 125.365 kb on + strand at 125.365 kb on + strand at 125.366 kb on - strand at 125.366 kb on - strand at 125.387 kb on + strand at 125.388 kb on - strand at 125.388 kb on - strand at 125.388 kb on - strand at 125.388 kb on - strand at 125.414 kb on - strand at 125.414 kb on - strand at 125.414 kb on - strand at 125.414 kb on - strand at 125.496 kb on + strand, within IAI47_19480 at 125.496 kb on + strand, within IAI47_19480 at 125.496 kb on + strand, within IAI47_19480 at 125.497 kb on - strand, within IAI47_19480 at 125.497 kb on - strand, within IAI47_19480 at 125.520 kb on + strand, within IAI47_19480 at 125.520 kb on + strand, within IAI47_19480 at 125.521 kb on - strand, within IAI47_19480 at 125.521 kb on - strand, within IAI47_19480 at 125.521 kb on - strand, within IAI47_19480 at 125.660 kb on - strand, within IAI47_19480 at 125.685 kb on + strand, within IAI47_19480 at 125.686 kb on - strand, within IAI47_19480 at 125.686 kb on - strand, within IAI47_19480 at 125.686 kb on - strand, within IAI47_19480 at 125.738 kb on + strand, within IAI47_19480 at 125.738 kb on + strand, within IAI47_19480 at 125.738 kb on + strand, within IAI47_19480 at 125.739 kb on - strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.743 kb on + strand, within IAI47_19480 at 125.744 kb on - strand, within IAI47_19480 at 125.799 kb on + strand, within IAI47_19480 at 125.800 kb on - strand, within IAI47_19480 at 125.847 kb on + strand, within IAI47_19480 at 125.847 kb on + strand, within IAI47_19480 at 125.847 kb on + strand, within IAI47_19480 at 126.008 kb on + strand, within IAI47_19480 at 126.009 kb on - strand, within IAI47_19480 at 126.009 kb on - strand, within IAI47_19480
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 122,907 - IAI47_19470 0.35 -0.9 122,907 - IAI47_19470 0.35 -1.9 122,907 - IAI47_19470 0.35 -1.5 122,907 - IAI47_19470 0.35 -0.6 122,908 + IAI47_19470 0.35 +0.3 122,908 + IAI47_19470 0.35 -0.5 122,908 + IAI47_19470 0.35 -0.2 122,909 - IAI47_19470 0.35 -2.1 122,909 - IAI47_19470 0.35 +0.6 122,909 - IAI47_19470 0.35 +0.2 122,909 - IAI47_19470 0.35 +0.5 122,909 - IAI47_19470 0.35 -0.1 122,994 + IAI47_19470 0.41 +2.3 122,995 - IAI47_19470 0.41 -1.6 122,995 - IAI47_19470 0.41 -0.4 123,045 + IAI47_19470 0.44 -1.6 123,079 + IAI47_19470 0.47 +0.5 123,079 + IAI47_19470 0.47 -1.3 123,080 - IAI47_19470 0.47 +0.3 123,092 + IAI47_19470 0.48 +1.7 123,101 + IAI47_19470 0.48 +1.0 123,159 + IAI47_19470 0.53 -0.9 123,183 - IAI47_19470 0.54 -3.0 123,183 - IAI47_19470 0.54 -0.5 123,239 + IAI47_19470 0.58 -0.3 123,256 + IAI47_19470 0.59 -2.1 123,256 + IAI47_19470 0.59 +0.7 123,257 - IAI47_19470 0.59 -0.0 123,281 + IAI47_19470 0.61 -0.9 123,282 - IAI47_19470 0.61 -1.6 123,282 - IAI47_19470 0.61 -2.3 123,303 + IAI47_19470 0.63 -1.2 123,414 + IAI47_19470 0.71 -1.5 123,420 + IAI47_19470 0.71 -2.5 123,420 + IAI47_19470 0.71 +1.4 123,420 + IAI47_19470 0.71 -0.6 123,421 - IAI47_19470 0.71 -2.3 123,421 - IAI47_19470 0.71 -0.7 123,421 - IAI47_19470 0.71 -0.9 123,421 - IAI47_19470 0.71 -1.1 123,425 + IAI47_19470 0.71 +0.1 123,510 + IAI47_19470 0.77 -0.3 123,511 - IAI47_19470 0.77 +0.7 123,533 - IAI47_19470 0.79 -2.9 123,549 - IAI47_19470 0.80 -0.9 123,575 + IAI47_19470 0.82 -2.6 123,575 + IAI47_19470 0.82 -1.7 123,575 + IAI47_19470 0.82 -0.3 123,576 - IAI47_19470 0.82 -0.7 123,576 - IAI47_19470 0.82 -3.1 123,576 - IAI47_19470 0.82 -1.7 123,576 - IAI47_19470 0.82 +0.0 123,583 + IAI47_19470 0.82 +0.7 123,583 + IAI47_19470 0.82 +0.7 123,583 + IAI47_19470 0.82 +1.5 123,583 + IAI47_19470 0.82 +1.1 123,584 - IAI47_19470 0.83 +0.2 123,584 - IAI47_19470 0.83 -0.7 123,584 - IAI47_19470 0.83 -0.1 123,584 - IAI47_19470 0.83 -1.3 123,584 - IAI47_19470 0.83 -1.0 123,584 - IAI47_19470 0.83 -0.6 123,584 - IAI47_19470 0.83 -1.4 123,584 - IAI47_19470 0.83 +0.1 123,584 - IAI47_19470 0.83 -1.3 123,584 - IAI47_19470 0.83 -0.8 123,584 - IAI47_19470 0.83 -1.6 123,648 + IAI47_19470 0.87 -2.3 123,648 + IAI47_19470 0.87 +0.2 123,648 + IAI47_19470 0.87 +0.3 123,649 - IAI47_19470 0.87 -0.4 123,649 - IAI47_19470 0.87 +1.2 123,649 - IAI47_19470 0.87 -0.5 123,673 + IAI47_19470 0.89 -0.5 123,674 - IAI47_19470 0.89 +1.3 123,674 - IAI47_19470 0.89 -0.4 123,764 + +0.1 123,764 + -1.2 123,764 + -1.0 123,764 + -0.9 123,764 + +0.4 123,764 + -0.4 123,765 - -1.5 123,765 - +0.7 123,832 + -0.1 123,832 + -0.7 123,832 + -0.6 123,833 - -2.1 123,833 - +0.1 123,880 + +0.7 124,126 + IAI47_19475 0.17 -0.0 124,127 - IAI47_19475 0.17 -0.5 124,127 - IAI47_19475 0.17 -0.3 124,298 + IAI47_19475 0.30 -2.1 124,298 + IAI47_19475 0.30 +1.0 124,298 + IAI47_19475 0.30 +0.4 124,298 + IAI47_19475 0.30 +0.7 124,299 - IAI47_19475 0.30 +1.5 124,299 - IAI47_19475 0.30 -1.3 124,299 - IAI47_19475 0.30 -1.3 124,299 - IAI47_19475 0.30 -0.3 124,299 - IAI47_19475 0.30 -0.6 124,438 + IAI47_19475 0.41 -1.3 124,438 + IAI47_19475 0.41 +0.3 124,438 + IAI47_19475 0.41 -0.9 124,439 - IAI47_19475 0.41 -0.6 124,439 - IAI47_19475 0.41 -1.1 124,439 - IAI47_19475 0.41 -1.1 124,439 - IAI47_19475 0.41 -0.9 124,527 + IAI47_19475 0.48 +0.2 124,527 + IAI47_19475 0.48 -0.5 124,528 - IAI47_19475 0.48 -1.5 124,528 - IAI47_19475 0.48 -1.5 124,568 - IAI47_19475 0.51 +0.7 124,568 - IAI47_19475 0.51 +0.1 124,679 + IAI47_19475 0.60 -2.6 124,727 + IAI47_19475 0.64 -1.0 124,727 + IAI47_19475 0.64 -1.9 124,727 + IAI47_19475 0.64 +0.1 124,727 + IAI47_19475 0.64 -0.3 124,728 - IAI47_19475 0.64 -1.0 124,728 - IAI47_19475 0.64 -0.9 124,767 + IAI47_19475 0.67 -0.6 124,768 - IAI47_19475 0.67 +0.1 124,847 - IAI47_19475 0.73 -0.5 124,911 + IAI47_19475 0.78 -0.3 124,935 - IAI47_19475 0.80 -0.9 124,943 + IAI47_19475 0.80 +0.7 124,943 + IAI47_19475 0.80 +0.5 124,944 - IAI47_19475 0.81 -1.0 124,944 - IAI47_19475 0.81 -0.4 124,965 + IAI47_19475 0.82 -1.8 124,971 + IAI47_19475 0.83 -0.9 124,981 + IAI47_19475 0.83 +0.4 124,982 - IAI47_19475 0.84 +1.1 125,071 - -0.6 125,114 + +0.2 125,114 + -2.1 125,114 + +0.7 125,114 + -0.7 125,115 - -0.3 125,125 + -2.1 125,130 + -2.1 125,131 - -2.5 125,136 + -0.3 125,195 + -0.3 125,195 + -1.5 125,195 + -1.3 125,196 - -0.9 125,196 - +0.7 125,196 - +0.7 125,196 - -0.9 125,208 + +0.6 125,211 + -0.3 125,211 + +1.5 125,212 - +0.1 125,212 - +0.0 125,212 - +0.7 125,212 - -1.2 125,212 - +0.7 125,222 - -2.2 125,243 + -1.5 125,244 - -1.6 125,244 - -0.8 125,244 - -1.0 125,244 - -1.6 125,247 + -1.2 125,247 + -2.9 125,247 + -1.8 125,248 - -0.6 125,248 - -0.3 125,248 - -1.6 125,317 - -2.7 125,329 + -0.7 125,329 + +0.7 125,329 + -1.2 125,329 + -1.2 125,329 + -0.9 125,329 + -0.4 125,329 + -2.3 125,330 - +0.5 125,330 - -2.5 125,330 - -1.6 125,330 - -0.9 125,332 + -2.4 125,332 + -2.3 125,341 + -1.4 125,341 + -2.6 125,342 - -0.4 125,350 + -0.3 125,350 + -0.5 125,365 + -1.2 125,365 + -2.3 125,366 - -1.1 125,366 - -2.2 125,387 + -1.5 125,388 - -0.3 125,388 - -1.3 125,388 - -2.5 125,388 - +0.3 125,414 - -0.6 125,414 - +0.7 125,414 - -1.1 125,414 - -0.5 125,496 + IAI47_19480 0.13 -0.2 125,496 + IAI47_19480 0.13 -1.6 125,496 + IAI47_19480 0.13 -0.3 125,497 - IAI47_19480 0.13 -1.1 125,497 - IAI47_19480 0.13 -0.5 125,520 + IAI47_19480 0.14 -0.1 125,520 + IAI47_19480 0.14 -1.7 125,521 - IAI47_19480 0.15 -2.3 125,521 - IAI47_19480 0.15 -1.9 125,521 - IAI47_19480 0.15 -1.1 125,660 - IAI47_19480 0.24 +1.0 125,685 + IAI47_19480 0.26 +1.3 125,686 - IAI47_19480 0.26 -1.1 125,686 - IAI47_19480 0.26 -0.5 125,686 - IAI47_19480 0.26 -0.1 125,738 + IAI47_19480 0.29 +0.1 125,738 + IAI47_19480 0.29 -0.7 125,738 + IAI47_19480 0.29 -1.0 125,739 - IAI47_19480 0.29 +0.1 125,743 + IAI47_19480 0.29 +0.3 125,743 + IAI47_19480 0.29 -2.6 125,743 + IAI47_19480 0.29 -0.3 125,743 + IAI47_19480 0.29 +0.1 125,743 + IAI47_19480 0.29 -0.3 125,743 + IAI47_19480 0.29 +0.1 125,743 + IAI47_19480 0.29 -1.5 125,743 + IAI47_19480 0.29 -0.5 125,744 - IAI47_19480 0.30 -2.3 125,799 + IAI47_19480 0.33 -0.3 125,800 - IAI47_19480 0.33 -2.2 125,847 + IAI47_19480 0.36 -2.5 125,847 + IAI47_19480 0.36 -1.2 125,847 + IAI47_19480 0.36 -0.1 126,008 + IAI47_19480 0.47 -1.4 126,009 - IAI47_19480 0.47 +0.7 126,009 - IAI47_19480 0.47 -0.9
Or see this region's nucleotide sequence