Strain Fitness in Pantoea sp. MT58 around IAI47_17855

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
3,791,998	-				-0.5
3,791,998	-				+1.2
3,791,998	-				-1.4
3,791,998	-				-0.5
3,791,998	-				-0.0
3,792,000	-				+2.1
3,792,000	-				+0.6
3,792,000	-				-0.5
3,792,000	-				+0.1
3,792,000	-				-0.2
3,792,004	+				+0.2
3,792,004	+				-1.3
3,792,004	+				-1.5
3,792,004	+				-0.8
3,792,004	+				+0.6
3,792,004	+				-1.2
3,792,004	+				-0.9
3,792,004	+				-0.2
3,792,005	-				-0.2
3,792,005	-				-0.1
3,792,005	-				+0.0
3,792,005	-				-0.3
3,792,005	-				-0.1
3,792,005	-				+0.0
3,792,005	-				+1.2
3,792,005	-				+1.1
3,792,005	-				+0.3
3,792,005	-				-0.2
3,792,005	-				-0.0
3,792,005	-				+0.8
3,792,005	-				+0.3
3,792,005	-				-0.4
3,792,005	-				-0.2
3,792,005	-				+0.4
3,792,005	-				-0.2
3,792,005	-				+0.3
3,792,005	-				+0.1
3,792,005	-				+2.1
3,792,005	-				+0.6
3,792,066	+				-1.1
3,792,066	+				-0.8
3,792,066	+				+0.3
3,792,066	+				+0.6
3,792,067	-				+1.0
3,792,067	-				-1.4
3,792,101	+				-0.1
3,792,174	+		IAI47_17855	0.12	+1.4
3,792,175	-		IAI47_17855	0.12	-1.4
3,792,178	+		IAI47_17855	0.12	+0.9
3,792,178	+		IAI47_17855	0.12	-0.6
3,792,178	+		IAI47_17855	0.12	-0.9
3,792,178	+		IAI47_17855	0.12	+0.6
3,792,179	-		IAI47_17855	0.13	-0.8
3,792,179	-		IAI47_17855	0.13	+0.2
3,792,179	-		IAI47_17855	0.13	+0.2
3,792,179	-		IAI47_17855	0.13	-0.9
3,792,186	+		IAI47_17855	0.13	+0.2
3,792,186	+		IAI47_17855	0.13	+0.1
3,792,186	+		IAI47_17855	0.13	+0.2
3,792,186	+		IAI47_17855	0.13	+0.6
3,792,186	+		IAI47_17855	0.13	-0.5
3,792,186	+		IAI47_17855	0.13	-2.4
3,792,187	-		IAI47_17855	0.13	-0.7
3,792,187	-		IAI47_17855	0.13	-0.4
3,792,187	-		IAI47_17855	0.13	+0.5
3,792,187	-		IAI47_17855	0.13	+0.1
3,792,190	+		IAI47_17855	0.14	+0.4
3,792,190	+		IAI47_17855	0.14	+0.8
3,792,190	+		IAI47_17855	0.14	+1.1
3,792,190	+		IAI47_17855	0.14	-0.1
3,792,190	+		IAI47_17855	0.14	+0.7
3,792,190	+		IAI47_17855	0.14	+0.2
3,792,190	+		IAI47_17855	0.14	+1.2
3,792,190	+		IAI47_17855	0.14	-0.2
3,792,190	+		IAI47_17855	0.14	-0.5
3,792,190	+		IAI47_17855	0.14	+1.1
3,792,190	+		IAI47_17855	0.14	-0.4
3,792,190	+		IAI47_17855	0.14	+0.6
3,792,190	+		IAI47_17855	0.14	+1.0
3,792,190	+		IAI47_17855	0.14	+0.8
3,792,191	-		IAI47_17855	0.14	-0.1
3,792,191	-		IAI47_17855	0.14	-0.4
3,792,191	-		IAI47_17855	0.14	-0.1
3,792,191	-		IAI47_17855	0.14	+0.1
3,792,191	-		IAI47_17855	0.14	-1.1
3,792,191	-		IAI47_17855	0.14	-0.6
3,792,191	-		IAI47_17855	0.14	+0.5
3,792,191	-		IAI47_17855	0.14	+0.1
3,792,191	-		IAI47_17855	0.14	-0.1
3,792,191	-		IAI47_17855	0.14	+0.1
3,792,191	-		IAI47_17855	0.14	-0.0
3,792,191	-		IAI47_17855	0.14	+0.1
3,792,191	-		IAI47_17855	0.14	-0.7
3,792,191	-		IAI47_17855	0.14	+0.6
3,792,191	-		IAI47_17855	0.14	+1.0
3,792,191	-		IAI47_17855	0.14	+1.5
3,792,191	-		IAI47_17855	0.14	-0.5
3,792,191	-		IAI47_17855	0.14	-0.8
3,792,191	-		IAI47_17855	0.14	+2.4
3,792,209	-		IAI47_17855	0.16	-0.1
3,792,269	+		IAI47_17855	0.22	+0.5
3,792,269	+		IAI47_17855	0.22	+1.3
3,792,270	-		IAI47_17855	0.22	+0.8
3,792,270	-		IAI47_17855	0.22	+0.8
3,792,292	-		IAI47_17855	0.24	+0.5
3,792,313	+		IAI47_17855	0.26	-0.5
3,792,313	+		IAI47_17855	0.26	-1.3
3,792,313	+		IAI47_17855	0.26	-2.4
3,792,313	+		IAI47_17855	0.26	-0.2
3,792,314	-		IAI47_17855	0.26	+0.8
3,792,314	-		IAI47_17855	0.26	-0.9
3,792,314	-		IAI47_17855	0.26	+0.1
3,792,327	+		IAI47_17855	0.28	-0.8
3,792,337	+		IAI47_17855	0.29	-0.0
3,792,337	+		IAI47_17855	0.29	-0.2
3,792,337	+		IAI47_17855	0.29	+1.3
3,792,337	+		IAI47_17855	0.29	+0.5
3,792,337	+		IAI47_17855	0.29	-1.5
3,792,337	+		IAI47_17855	0.29	+0.8
3,792,337	+		IAI47_17855	0.29	+2.1
3,792,337	+		IAI47_17855	0.29	+0.5
3,792,337	+		IAI47_17855	0.29	-1.2
3,792,337	+		IAI47_17855	0.29	-2.5
3,792,337	+		IAI47_17855	0.29	-0.2
3,792,337	+		IAI47_17855	0.29	+0.1
3,792,338	-		IAI47_17855	0.29	-0.6
3,792,338	-		IAI47_17855	0.29	-0.4
3,792,338	-		IAI47_17855	0.29	+0.4
3,792,338	-		IAI47_17855	0.29	+1.8
3,792,338	-		IAI47_17855	0.29	-0.4
3,792,338	-		IAI47_17855	0.29	-2.2
3,792,338	-		IAI47_17855	0.29	+0.2
3,792,442	+		IAI47_17855	0.39	-1.2
3,792,442	+		IAI47_17855	0.39	-0.6
3,792,442	+		IAI47_17855	0.39	-0.4
3,792,442	+		IAI47_17855	0.39	-1.4
3,792,442	+		IAI47_17855	0.39	+0.2
3,792,442	+		IAI47_17855	0.39	+1.3
3,792,443	-		IAI47_17855	0.39	-0.9
3,792,443	-		IAI47_17855	0.39	-0.2
3,792,443	-		IAI47_17855	0.39	-0.5
3,792,443	-		IAI47_17855	0.39	+1.0
3,792,443	-		IAI47_17855	0.39	-0.9
3,792,461	-		IAI47_17855	0.41	-0.5
3,792,461	-		IAI47_17855	0.41	-2.2
3,792,462	+		IAI47_17855	0.41	+0.1
3,792,462	+		IAI47_17855	0.41	+0.3
3,792,463	-		IAI47_17855	0.41	+0.5
3,792,519	-		IAI47_17855	0.47	+0.9
3,792,519	-		IAI47_17855	0.47	+2.2
3,792,624	+		IAI47_17855	0.58	+0.4
3,792,624	+		IAI47_17855	0.58	+1.4
3,792,624	+		IAI47_17855	0.58	-0.2
3,792,624	+		IAI47_17855	0.58	+0.1
3,792,624	+		IAI47_17855	0.58	-1.5
3,792,624	+		IAI47_17855	0.58	+1.4
3,792,625	-		IAI47_17855	0.58	+1.4
3,792,625	-		IAI47_17855	0.58	+2.0
3,792,625	-		IAI47_17855	0.58	-1.0
3,792,625	-		IAI47_17855	0.58	+0.5
3,792,625	-		IAI47_17855	0.58	-0.9
3,792,625	-		IAI47_17855	0.58	-1.7
3,792,625	-		IAI47_17855	0.58	+0.4
3,792,625	-		IAI47_17855	0.58	-0.5
3,792,629	-		IAI47_17855	0.58	+0.0
3,792,694	+		IAI47_17855	0.65	+0.0
3,792,694	+		IAI47_17855	0.65	+0.2
3,792,694	+		IAI47_17855	0.65	+0.7
3,792,695	-		IAI47_17855	0.65	-0.2
3,792,695	-		IAI47_17855	0.65	-0.1
3,792,695	-		IAI47_17855	0.65	+1.5
3,792,708	+		IAI47_17855	0.66	+0.5
3,792,714	+		IAI47_17855	0.67	-2.0
3,792,714	+		IAI47_17855	0.67	+1.5
3,792,714	+		IAI47_17855	0.67	-0.3
3,792,714	+		IAI47_17855	0.67	-0.1
3,792,714	+		IAI47_17855	0.67	+0.9
3,792,714	+		IAI47_17855	0.67	+3.1
3,792,715	-		IAI47_17855	0.67	+0.1
3,792,715	-		IAI47_17855	0.67	+1.0
3,792,715	-		IAI47_17855	0.67	-0.8
3,792,715	-		IAI47_17855	0.67	-1.1
3,792,715	-		IAI47_17855	0.67	-0.7
3,792,807	+		IAI47_17855	0.76	+0.4
3,792,808	-		IAI47_17855	0.77	+1.9
3,792,808	-		IAI47_17855	0.77	+0.1
3,792,859	+		IAI47_17855	0.82	+0.7
3,792,859	+		IAI47_17855	0.82	+0.7
3,792,860	-		IAI47_17855	0.82	+2.4
3,792,860	-		IAI47_17855	0.82	+0.4
3,792,860	-		IAI47_17855	0.82	-1.5
3,792,860	-		IAI47_17855	0.82	+0.4
3,792,860	-		IAI47_17855	0.82	+0.4
3,792,930	+		IAI47_17855	0.89	+1.2
3,792,930	+		IAI47_17855	0.89	+0.2
3,792,931	-		IAI47_17855	0.89	+0.2
3,793,028	+				-2.4
3,793,028	+				+2.0
3,793,029	-				+1.2
3,793,036	+				-0.4
3,793,087	+				+0.4
3,793,108	+				+0.9
3,793,108	+				-0.8
3,793,109	-				-1.8
3,793,109	-				-1.8
3,793,182	+				-0.7
3,793,182	+				-0.6
3,793,182	+				-1.3
3,793,182	+				+1.8
3,793,186	+				+1.1
3,793,186	+				-0.3
3,793,187	-				+0.8
3,793,187	-				-0.8
3,793,193	+				+2.0
3,793,193	+				+1.6
3,793,193	+				-0.6
3,793,194	-				-0.2
3,793,194	-				+1.4
3,793,194	-				+0.4
3,793,199	+				+2.5
3,793,199	+				-0.1
3,793,199	+				-0.8
3,793,199	+				+0.6
3,793,199	+				+0.4
3,793,200	-				+1.6
3,793,200	-				+0.8
3,793,286	-		IAI47_17860	0.13	-1.0
3,793,286	-		IAI47_17860	0.13	+0.4
3,793,286	-		IAI47_17860	0.13	-0.1
3,793,297	+		IAI47_17860	0.18	-0.2
3,793,298	-		IAI47_17860	0.18	-0.5
3,793,346	+		IAI47_17860	0.36	+1.4
3,793,346	+		IAI47_17860	0.36	-0.3
3,793,347	-		IAI47_17860	0.36	-1.4
3,793,347	-		IAI47_17860	0.36	+0.0
3,793,347	-		IAI47_17860	0.36	+0.1
3,793,347	-		IAI47_17860	0.36	-0.2
3,793,347	-		IAI47_17860	0.36	+2.0
3,793,347	-		IAI47_17860	0.36	+1.8
3,793,347	-		IAI47_17860	0.36	-1.0
3,793,347	-		IAI47_17860	0.36	-0.8
3,793,347	-		IAI47_17860	0.36	-0.8
3,793,347	-		IAI47_17860	0.36	-0.9
3,793,347	-		IAI47_17860	0.36	-0.8
3,793,347	-		IAI47_17860	0.36	-0.2
3,793,379	+		IAI47_17860	0.48	+0.2
3,793,380	-		IAI47_17860	0.49	-0.5
3,793,380	-		IAI47_17860	0.49	-1.5
3,793,380	-		IAI47_17860	0.49	+0.2
3,793,380	-		IAI47_17860	0.49	-0.4
3,793,496	+				+0.8
3,793,499	+				-1.8
3,793,500	-				-1.5
3,793,500	-				-0.3
3,793,500	-				+0.2
3,793,500	-				-0.2
3,793,500	-				-1.2
3,793,500	-				-1.2
3,793,500	-				+0.5
3,793,505	+				-1.0
3,793,505	+				+0.5
3,793,509	-				+0.6
3,793,509	-				-1.1
3,793,547	-				+0.4
3,793,552	+				-0.8
3,793,555	+				+0.0
3,793,598	+				-1.4
3,793,840	+		IAI47_17865	0.14	-1.0
3,793,840	+		IAI47_17865	0.14	-0.9
3,793,841	-		IAI47_17865	0.15	-1.4
3,793,863	+		IAI47_17865	0.17	-0.4
3,793,863	+		IAI47_17865	0.17	+0.3
3,793,863	+		IAI47_17865	0.17	-1.3
3,793,864	-		IAI47_17865	0.17	-0.7
3,793,864	-		IAI47_17865	0.17	-0.2
3,793,893	+		IAI47_17865	0.20	+0.2
3,793,893	+		IAI47_17865	0.20	-0.6
3,793,894	-		IAI47_17865	0.20	+0.5
3,793,894	-		IAI47_17865	0.20	+0.8
3,793,894	-		IAI47_17865	0.20	-0.5
3,793,894	-		IAI47_17865	0.20	+0.4
3,793,899	+		IAI47_17865	0.20	-0.7
3,793,899	+		IAI47_17865	0.20	+0.8
3,793,899	+		IAI47_17865	0.20	+1.2
3,793,899	+		IAI47_17865	0.20	-0.9
3,793,899	+		IAI47_17865	0.20	+2.1
3,793,899	+		IAI47_17865	0.20	+0.2
3,793,900	-		IAI47_17865	0.20	-1.2
3,793,900	-		IAI47_17865	0.20	+0.9
3,793,900	-		IAI47_17865	0.20	-0.4
3,793,992	+		IAI47_17865	0.30	+0.5
3,793,992	+		IAI47_17865	0.30	-1.5
3,793,992	+		IAI47_17865	0.30	+0.6
3,793,993	-		IAI47_17865	0.30	+0.8
3,793,993	-		IAI47_17865	0.30	+0.2