Strain Fitness in Pantoea sp. MT58 around IAI47_16465

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
3,486,886	-				+0.0
3,486,886	-				+0.0
3,486,897	+				-1.0
3,486,897	+				+1.1
3,486,898	-				+0.0
3,486,923	+				-0.6
3,486,933	+				+0.6
3,486,933	+				+1.0
3,486,933	+				-0.1
3,486,934	-				+0.4
3,486,945	+				+2.6
3,486,964	+				-0.5
3,486,964	+				+0.1
3,486,964	+				+0.0
3,486,964	+				+1.0
3,486,999	-				+1.2
3,487,115	-				-1.8
3,487,207	+		IAI47_16460	0.21	-0.7
3,487,207	+		IAI47_16460	0.21	+1.3
3,487,209	+		IAI47_16460	0.22	+0.1
3,487,209	+		IAI47_16460	0.22	-0.2
3,487,210	-		IAI47_16460	0.22	+0.2
3,487,210	-		IAI47_16460	0.22	+0.6
3,487,210	-		IAI47_16460	0.22	-0.4
3,487,210	-		IAI47_16460	0.22	+0.3
3,487,282	+		IAI47_16460	0.32	+0.5
3,487,282	+		IAI47_16460	0.32	-0.1
3,487,282	+		IAI47_16460	0.32	-0.5
3,487,282	+		IAI47_16460	0.32	-1.0
3,487,282	+		IAI47_16460	0.32	-0.2
3,487,282	+		IAI47_16460	0.32	+0.1
3,487,282	+		IAI47_16460	0.32	+0.1
3,487,282	+		IAI47_16460	0.32	+0.8
3,487,283	-		IAI47_16460	0.32	+1.1
3,487,283	-		IAI47_16460	0.32	+0.2
3,487,305	+		IAI47_16460	0.35	-0.9
3,487,306	-		IAI47_16460	0.35	-1.4
3,487,335	+		IAI47_16460	0.39	+3.6
3,487,336	-		IAI47_16460	0.39	+0.3
3,487,336	-		IAI47_16460	0.39	+0.3
3,487,415	+		IAI47_16460	0.50	-0.2
3,487,416	-		IAI47_16460	0.51	+1.7
3,487,533	+		IAI47_16460	0.67	+0.4
3,487,534	-		IAI47_16460	0.67	-2.0
3,487,534	-		IAI47_16460	0.67	-1.3
3,487,559	-		IAI47_16460	0.71	-1.8
3,487,570	+		IAI47_16460	0.72	+0.2
3,487,578	+		IAI47_16460	0.73	-0.2
3,487,578	+		IAI47_16460	0.73	+1.6
3,487,578	+		IAI47_16460	0.73	-2.5
3,487,578	+		IAI47_16460	0.73	+0.2
3,487,578	+		IAI47_16460	0.73	+0.9
3,487,578	+		IAI47_16460	0.73	+0.7
3,487,579	-		IAI47_16460	0.73	+0.8
3,487,579	-		IAI47_16460	0.73	+0.8
3,487,579	-		IAI47_16460	0.73	-0.1
3,487,633	+		IAI47_16460	0.81	-0.6
3,487,633	+		IAI47_16460	0.81	+0.0
3,487,650	+		IAI47_16460	0.83	-0.2
3,487,650	+		IAI47_16460	0.83	+0.3
3,487,650	+		IAI47_16460	0.83	-1.6
3,487,650	+		IAI47_16460	0.83	-1.1
3,487,651	-		IAI47_16460	0.83	-0.1
3,487,651	-		IAI47_16460	0.83	+0.8
3,487,651	-		IAI47_16460	0.83	-0.1
3,487,746	+				-0.1
3,487,746	+				+0.5
3,487,747	-				+0.3
3,487,768	+				+0.4
3,487,768	+				-0.2
3,487,791	+				-0.2
3,487,792	-				+0.3
3,487,792	-				-1.0
3,487,808	+				+0.2
3,487,809	-				+0.3
3,487,809	-				-0.8
3,487,835	-				+0.8
3,487,835	-				-0.4
3,487,835	-				+1.1
3,487,849	+				-2.0
3,487,849	+				+0.2
3,487,850	-				-0.4
3,487,850	-				-0.6
3,487,850	-				+1.1
3,487,892	-				-0.3
3,487,892	-				-0.3
3,487,892	-				-1.6
3,487,907	-				-0.2
3,487,907	-				+2.8
3,487,944	+				-0.6
3,487,944	+				+0.6
3,487,944	+				-0.2
3,487,944	+				-1.2
3,487,945	-				-1.0
3,487,945	-				-1.0
3,487,954	+				+1.2
3,488,045	+		IAI47_16465	0.12	+1.2
3,488,045	+		IAI47_16465	0.12	+1.0
3,488,085	+		IAI47_16465	0.15	-0.4
3,488,085	+		IAI47_16465	0.15	+0.8
3,488,085	+		IAI47_16465	0.15	-1.6
3,488,085	+		IAI47_16465	0.15	+0.4
3,488,086	-		IAI47_16465	0.15	+0.3
3,488,086	-		IAI47_16465	0.15	-0.4
3,488,086	-		IAI47_16465	0.15	-0.3
3,488,199	-		IAI47_16465	0.23	-1.0
3,488,199	-		IAI47_16465	0.23	+0.2
3,488,248	+		IAI47_16465	0.26	+1.0
3,488,248	+		IAI47_16465	0.26	+2.3
3,488,248	+		IAI47_16465	0.26	+0.8
3,488,248	+		IAI47_16465	0.26	-0.4
3,488,334	+		IAI47_16465	0.32	+1.2
3,488,386	+		IAI47_16465	0.35	-1.6
3,488,386	+		IAI47_16465	0.35	+0.2
3,488,386	+		IAI47_16465	0.35	-0.7
3,488,386	+		IAI47_16465	0.35	-0.8
3,488,386	+		IAI47_16465	0.35	+0.2
3,488,386	+		IAI47_16465	0.35	-1.0
3,488,386	+		IAI47_16465	0.35	+0.4
3,488,386	+		IAI47_16465	0.35	-0.5
3,488,386	+		IAI47_16465	0.35	+0.4
3,488,387	-		IAI47_16465	0.35	+1.5
3,488,387	-		IAI47_16465	0.35	-0.4
3,488,387	-		IAI47_16465	0.35	-1.0
3,488,387	-		IAI47_16465	0.35	-0.7
3,488,387	-		IAI47_16465	0.35	+0.6
3,488,387	-		IAI47_16465	0.35	-0.2
3,488,387	-		IAI47_16465	0.35	-1.0
3,488,387	-		IAI47_16465	0.35	+0.5
3,488,387	-		IAI47_16465	0.35	-0.7
3,488,387	-		IAI47_16465	0.35	-0.8
3,488,390	+		IAI47_16465	0.36	+0.2
3,488,390	+		IAI47_16465	0.36	-0.4
3,488,390	+		IAI47_16465	0.36	-0.1
3,488,390	+		IAI47_16465	0.36	+0.6
3,488,390	+		IAI47_16465	0.36	+0.3
3,488,390	+		IAI47_16465	0.36	+0.2
3,488,391	-		IAI47_16465	0.36	+0.8
3,488,391	-		IAI47_16465	0.36	+0.2
3,488,391	-		IAI47_16465	0.36	-0.6
3,488,404	+		IAI47_16465	0.37	-0.8
3,488,404	+		IAI47_16465	0.37	-0.0
3,488,404	+		IAI47_16465	0.37	-0.2
3,488,404	+		IAI47_16465	0.37	-0.9
3,488,404	+		IAI47_16465	0.37	+2.3
3,488,404	+		IAI47_16465	0.37	+1.1
3,488,404	+		IAI47_16465	0.37	+0.2
3,488,405	-		IAI47_16465	0.37	+2.3
3,488,405	-		IAI47_16465	0.37	-0.7
3,488,405	-		IAI47_16465	0.37	-0.2
3,488,405	-		IAI47_16465	0.37	+0.0
3,488,432	+		IAI47_16465	0.39	-0.4
3,488,432	+		IAI47_16465	0.39	+0.1
3,488,432	+		IAI47_16465	0.39	+0.4
3,488,476	+		IAI47_16465	0.42	-0.1
3,488,476	+		IAI47_16465	0.42	+0.9
3,488,476	+		IAI47_16465	0.42	+0.6
3,488,476	+		IAI47_16465	0.42	-0.9
3,488,477	-		IAI47_16465	0.42	+1.0
3,488,477	-		IAI47_16465	0.42	+0.4
3,488,477	-		IAI47_16465	0.42	-0.1
3,488,480	+		IAI47_16465	0.42	+0.2
3,488,480	+		IAI47_16465	0.42	+0.9
3,488,480	+		IAI47_16465	0.42	-0.6
3,488,480	+		IAI47_16465	0.42	-0.4
3,488,481	-		IAI47_16465	0.42	-0.5
3,488,555	+		IAI47_16465	0.47	+1.2
3,488,556	-		IAI47_16465	0.47	+0.5
3,488,638	-		IAI47_16465	0.53	-0.2
3,488,638	-		IAI47_16465	0.53	-1.8
3,488,638	-		IAI47_16465	0.53	-0.2
3,488,640	-		IAI47_16465	0.53	-1.2
3,488,640	-		IAI47_16465	0.53	-0.1
3,488,658	+		IAI47_16465	0.54	+0.8
3,488,658	+		IAI47_16465	0.54	-1.7
3,488,658	+		IAI47_16465	0.54	-0.3
3,488,659	-		IAI47_16465	0.54	-1.4
3,488,735	+		IAI47_16465	0.59	-1.0
3,488,736	-		IAI47_16465	0.59	-0.1
3,488,736	-		IAI47_16465	0.59	+1.3
3,488,748	+		IAI47_16465	0.60	+0.1
3,488,748	+		IAI47_16465	0.60	+0.3
3,488,749	-		IAI47_16465	0.60	-0.8
3,488,749	-		IAI47_16465	0.60	+0.2
3,488,766	+		IAI47_16465	0.61	+0.6
3,488,767	-		IAI47_16465	0.61	-0.8
3,488,767	-		IAI47_16465	0.61	+0.3
3,488,767	-		IAI47_16465	0.61	+1.2
3,488,819	+		IAI47_16465	0.65	-1.7
3,488,819	+		IAI47_16465	0.65	-0.8
3,488,820	-		IAI47_16465	0.65	+0.9
3,488,823	+		IAI47_16465	0.65	+0.6
3,488,823	+		IAI47_16465	0.65	-1.6
3,488,823	+		IAI47_16465	0.65	+0.3
3,488,823	+		IAI47_16465	0.65	+1.0
3,488,823	+		IAI47_16465	0.65	-0.3
3,488,823	+		IAI47_16465	0.65	+0.5
3,488,824	-		IAI47_16465	0.65	-0.6
3,488,824	-		IAI47_16465	0.65	+0.0
3,488,824	-		IAI47_16465	0.65	+0.5
3,488,824	-		IAI47_16465	0.65	-1.8
3,488,861	-		IAI47_16465	0.68	-0.3
3,488,861	-		IAI47_16465	0.68	+0.8
3,488,864	+		IAI47_16465	0.68	+1.2
3,488,864	+		IAI47_16465	0.68	-1.6
3,488,864	+		IAI47_16465	0.68	-0.3
3,488,873	+		IAI47_16465	0.69	+1.2
3,488,873	+		IAI47_16465	0.69	+0.6
3,488,874	-		IAI47_16465	0.69	-0.2
3,488,874	-		IAI47_16465	0.69	+0.8
3,488,874	-		IAI47_16465	0.69	-1.4
3,488,874	-		IAI47_16465	0.69	-0.4
3,488,874	-		IAI47_16465	0.69	-0.2
3,488,972	+		IAI47_16465	0.75	+0.5
3,488,973	-		IAI47_16465	0.76	+0.5
3,488,989	-		IAI47_16465	0.77	+0.5
3,489,021	+		IAI47_16465	0.79	+0.8
3,489,022	-		IAI47_16465	0.79	+0.6
3,489,022	-		IAI47_16465	0.79	+0.7
3,489,040	+		IAI47_16465	0.80	-0.0
3,489,041	-		IAI47_16465	0.80	+0.8
3,489,041	-		IAI47_16465	0.80	+0.2
3,489,096	-		IAI47_16465	0.84	-0.8
3,489,202	+				+1.3
3,489,204	+				-0.1
3,489,204	+				-0.9
3,489,204	+				+0.0
3,489,204	+				-0.1
3,489,205	-				+1.3
3,489,205	-				-0.4
3,489,205	-				+0.4
3,489,205	-				-2.2
3,489,236	+				+0.2
3,489,237	-				+0.3
3,489,243	+				+1.1
3,489,248	+				-0.0
3,489,248	+				+0.3
3,489,254	+				-0.3
3,489,254	+				-1.0
3,489,254	+				-0.2
3,489,255	-				+1.6
3,489,269	+				-1.6
3,489,269	+				+0.5
3,489,270	-				+0.6
3,489,270	-				-0.1
3,489,270	-				+1.3
3,489,289	+				+0.1
3,489,289	+				-0.8
3,489,289	+				+0.8
3,489,290	-				-0.8
3,489,290	-				+0.2
3,489,290	-				-0.0
3,489,507	+				-0.2
3,489,507	+				-0.9
3,489,507	+				+0.3
3,489,507	+				+0.4
3,489,528	+				+1.3
3,489,530	-				+1.3
3,489,540	+				+1.3
3,489,540	+				+1.1
3,489,541	-				-0.7
3,489,571	-		IAI47_16470	0.12	-0.9
3,489,573	+		IAI47_16470	0.12	+0.8
3,489,573	+		IAI47_16470	0.12	+0.2
3,489,573	+		IAI47_16470	0.12	-0.1
3,489,573	+		IAI47_16470	0.12	-1.3
3,489,573	+		IAI47_16470	0.12	-0.2
3,489,573	+		IAI47_16470	0.12	-1.2
3,489,573	+		IAI47_16470	0.12	+0.3
3,489,574	-		IAI47_16470	0.12	+1.5
3,489,574	-		IAI47_16470	0.12	+1.5
3,489,574	-		IAI47_16470	0.12	-1.1
3,489,574	-		IAI47_16470	0.12	-1.0
3,489,574	-		IAI47_16470	0.12	-1.3
3,489,574	-		IAI47_16470	0.12	-0.9
3,489,574	-		IAI47_16470	0.12	-0.9
3,489,574	-		IAI47_16470	0.12	+0.2
3,489,581	+		IAI47_16470	0.14	+0.6
3,489,581	+		IAI47_16470	0.14	+3.1
3,489,581	+		IAI47_16470	0.14	-0.5
3,489,581	+		IAI47_16470	0.14	+1.0
3,489,581	+		IAI47_16470	0.14	-0.1
3,489,581	+		IAI47_16470	0.14	+0.8
3,489,581	+		IAI47_16470	0.14	-0.2
3,489,582	-		IAI47_16470	0.14	+0.7
3,489,582	-		IAI47_16470	0.14	+0.8
3,489,594	+		IAI47_16470	0.16	-1.0
3,489,594	+		IAI47_16470	0.16	+1.8
3,489,594	+		IAI47_16470	0.16	+2.1
3,489,594	+		IAI47_16470	0.16	+0.4
3,489,595	-		IAI47_16470	0.16	+0.2
3,489,595	-		IAI47_16470	0.16	+0.9
3,489,595	-		IAI47_16470	0.16	-0.0
3,489,595	-		IAI47_16470	0.16	-0.0
3,489,595	-		IAI47_16470	0.16	+0.8
3,489,595	-		IAI47_16470	0.16	+1.2
3,489,596	+		IAI47_16470	0.16	+1.1
3,489,596	+		IAI47_16470	0.16	+1.0
3,489,596	+		IAI47_16470	0.16	-0.2
3,489,596	+		IAI47_16470	0.16	-0.2
3,489,597	-		IAI47_16470	0.17	-0.6
3,489,597	-		IAI47_16470	0.17	+0.4
3,489,597	-		IAI47_16470	0.17	-0.5
3,489,597	-		IAI47_16470	0.17	-0.1
3,489,597	-		IAI47_16470	0.17	+0.1
3,489,609	+		IAI47_16470	0.19	+1.0
3,489,610	-		IAI47_16470	0.19	+1.1
3,489,610	-		IAI47_16470	0.19	+0.5
3,489,610	-		IAI47_16470	0.19	+0.3
3,489,634	-		IAI47_16470	0.24	+1.4
3,489,634	-		IAI47_16470	0.24	-0.8
3,489,659	+		IAI47_16470	0.29	+0.5
3,489,660	-		IAI47_16470	0.29	-1.7
3,489,660	-		IAI47_16470	0.29	-0.2
3,489,666	+		IAI47_16470	0.30	+0.2
3,489,666	+		IAI47_16470	0.30	+0.1
3,489,674	+		IAI47_16470	0.32	+0.7
3,489,674	+		IAI47_16470	0.32	-1.2
3,489,674	+		IAI47_16470	0.32	+1.9
3,489,674	+		IAI47_16470	0.32	-1.2
3,489,675	-		IAI47_16470	0.32	-0.7
3,489,675	-		IAI47_16470	0.32	+0.8
3,489,675	-		IAI47_16470	0.32	+0.4
3,489,675	-		IAI47_16470	0.32	+0.3
3,489,702	+		IAI47_16470	0.37	+0.6
3,489,703	-		IAI47_16470	0.37	+0.2
3,489,703	-		IAI47_16470	0.37	-0.4
3,489,704	+		IAI47_16470	0.37	-0.5
3,489,704	+		IAI47_16470	0.37	+0.2
3,489,705	-		IAI47_16470	0.38	+0.6
3,489,740	+		IAI47_16470	0.44	+0.8
3,489,740	+		IAI47_16470	0.44	-0.6
3,489,740	+		IAI47_16470	0.44	-1.7
3,489,741	-		IAI47_16470	0.45	-0.2
3,489,741	-		IAI47_16470	0.45	+1.2
3,489,741	-		IAI47_16470	0.45	-0.2
3,489,741	-		IAI47_16470	0.45	+2.3
3,489,741	-		IAI47_16470	0.45	-0.8
3,489,744	+		IAI47_16470	0.45	-0.6
3,489,745	-		IAI47_16470	0.45	+1.9
3,489,804	+		IAI47_16470	0.57	-1.3
3,489,804	+		IAI47_16470	0.57	+1.1
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