Strain Fitness in Pantoea sp. MT58 around IAI47_14355

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
3,030,566	-				+0.0
3,030,566	-				-0.3
3,030,566	-				-0.2
3,030,630	-				-0.6
3,030,678	+				-0.9
3,030,679	-				-1.8
3,030,733	+				-2.0
3,030,816	+		IAI47_14350	0.23	-2.0
3,030,816	+		IAI47_14350	0.23	-4.0
3,030,816	+		IAI47_14350	0.23	-1.6
3,030,817	-		IAI47_14350	0.23	+0.8
3,030,817	-		IAI47_14350	0.23	-0.8
3,030,817	-		IAI47_14350	0.23	-1.8
3,030,817	-		IAI47_14350	0.23	-2.2
3,030,832	+		IAI47_14350	0.26	-2.4
3,030,842	-		IAI47_14350	0.28	-3.0
3,030,892	+		IAI47_14350	0.38	-2.0
3,030,892	+		IAI47_14350	0.38	-2.3
3,030,892	+		IAI47_14350	0.38	-1.6
3,030,893	-		IAI47_14350	0.38	-1.2
3,030,893	-		IAI47_14350	0.38	-2.6
3,030,893	-		IAI47_14350	0.38	-1.6
3,030,893	-		IAI47_14350	0.38	-2.2
3,030,928	+		IAI47_14350	0.45	-1.2
3,030,928	+		IAI47_14350	0.45	-2.4
3,030,928	+		IAI47_14350	0.45	-3.3
3,030,928	+		IAI47_14350	0.45	-4.1
3,030,929	-		IAI47_14350	0.46	-3.6
3,030,929	-		IAI47_14350	0.46	-2.2
3,030,929	-		IAI47_14350	0.46	-3.4
3,030,929	-		IAI47_14350	0.46	-3.8
3,030,929	-		IAI47_14350	0.46	-0.2
3,030,967	-		IAI47_14350	0.53	-1.8
3,030,987	+		IAI47_14350	0.57	-2.7
3,030,988	-		IAI47_14350	0.57	-3.5
3,030,988	-		IAI47_14350	0.57	-3.5
3,031,007	+		IAI47_14350	0.61	+0.8
3,031,007	+		IAI47_14350	0.61	-2.6
3,031,008	-		IAI47_14350	0.61	-3.9
3,031,242	+				-2.0
3,031,242	+				-0.8
3,031,243	-				-2.2
3,031,243	-				-1.6
3,031,243	-				-1.8
3,031,243	-				-1.8
3,031,243	-				-2.7
3,031,243	-				-2.4
3,031,243	-				-2.0
3,031,282	+				-2.1
3,031,417	-		IAI47_14355	0.20	-4.5
3,031,650	+		IAI47_14355	0.42	-1.6
3,031,650	+		IAI47_14355	0.42	-2.2
3,031,650	+		IAI47_14355	0.42	-1.6
3,031,651	-		IAI47_14355	0.42	-1.8
3,031,651	-		IAI47_14355	0.42	-1.6
3,031,651	-		IAI47_14355	0.42	-1.6
3,031,651	-		IAI47_14355	0.42	-1.8
3,031,651	-		IAI47_14355	0.42	-1.2
3,031,724	+		IAI47_14355	0.49	-3.1
3,031,724	+				-0.2
3,031,724	+		IAI47_14355	0.49	-1.9
3,031,724	+		IAI47_14355	0.49	-4.2
3,031,724	+		IAI47_14355	0.49	-4.0
3,031,724	+		IAI47_14355	0.49	-4.4
3,031,724	+		IAI47_14355	0.49	-2.9
3,031,725	-		IAI47_14355	0.49	-2.8
3,031,725	-		IAI47_14355	0.49	-1.8
3,031,725	-		IAI47_14355	0.49	-1.2
3,031,725	-		IAI47_14355	0.49	-3.4
3,031,725	-		IAI47_14355	0.49	-3.9
3,031,725	-		IAI47_14355	0.49	-2.2
3,031,725	-		IAI47_14355	0.49	-1.6
3,031,728	-		IAI47_14355	0.49	-2.0
3,031,729	+		IAI47_14355	0.50	-3.1
3,031,729	+		IAI47_14355	0.50	-3.6
3,031,730	-		IAI47_14355	0.50	-3.8
3,031,730	-		IAI47_14355	0.50	-2.9
3,031,743	+		IAI47_14355	0.51	-3.2
3,031,743	+		IAI47_14355	0.51	-2.4
3,031,744	-		IAI47_14355	0.51	-2.4
3,031,744	-		IAI47_14355	0.51	-1.8
3,031,744	-		IAI47_14355	0.51	-4.0
3,031,744	-		IAI47_14355	0.51	-0.8
3,031,778	+		IAI47_14355	0.54	-2.2
3,031,779	-		IAI47_14355	0.54	-1.6
3,031,839	+		IAI47_14355	0.60	-4.0
3,031,839	+		IAI47_14355	0.60	-2.0
3,031,839	+		IAI47_14355	0.60	-1.6
3,031,839	+		IAI47_14355	0.60	-2.8
3,031,839	+		IAI47_14355	0.60	-1.8
3,031,840	-		IAI47_14355	0.60	-2.4
3,031,840	-		IAI47_14355	0.60	-3.1
3,031,840	-		IAI47_14355	0.60	-2.6
3,031,840	-		IAI47_14355	0.60	-2.0
3,031,840	-		IAI47_14355	0.60	-2.4
3,031,855	+		IAI47_14355	0.61	-1.2
3,031,855	+		IAI47_14355	0.61	-2.8
3,031,855	+		IAI47_14355	0.61	-2.4
3,031,855	+		IAI47_14355	0.61	-3.6
3,031,856	-		IAI47_14355	0.62	-1.2
3,031,887	+		IAI47_14355	0.64	-2.7
3,031,909	-		IAI47_14355	0.66	-1.8
3,032,027	+		IAI47_14355	0.78	-4.3
3,032,027	+		IAI47_14355	0.78	-2.2
3,032,027	+		IAI47_14355	0.78	-3.0
3,032,027	+		IAI47_14355	0.78	-2.0
3,032,027	+		IAI47_14355	0.78	-2.7
3,032,050	-		IAI47_14355	0.80	-3.8
3,032,114	-		IAI47_14355	0.86	-4.2
3,032,227	+				-1.5
3,032,227	+				-3.8
3,032,264	-				-0.9
3,032,313	+				-1.1
3,032,335	+				-1.4
3,032,335	+				-0.2
3,032,336	-				+0.9
3,032,336	-				+0.1
3,032,350	+				-0.5
3,032,351	-				+1.2
3,032,351	-				-2.0
3,032,351	-				+1.4
3,032,351	-				+0.2
3,032,391	+				-0.0
3,032,425	-				-0.7
3,032,460	+				-0.5
3,032,460	+				+1.6
3,032,460	+				-0.7
3,032,460	+				+1.3
3,032,461	-				-2.6
3,032,461	-				-0.0
3,032,461	-				-0.7
3,032,461	-				-0.7
3,032,505	+				+0.8
3,032,506	-				-1.3
3,032,595	+		IAI47_14360	0.10	-0.2
3,032,595	+		IAI47_14360	0.10	-0.2
3,032,596	-		IAI47_14360	0.10	+1.2
3,032,596	-		IAI47_14360	0.10	+1.8
3,032,596	-		IAI47_14360	0.10	+0.2
3,032,626	+		IAI47_14360	0.11	+0.8
3,032,626	+		IAI47_14360	0.11	-0.6
3,032,626	+		IAI47_14360	0.11	-1.9
3,032,685	+		IAI47_14360	0.14	+0.7
3,032,685	+		IAI47_14360	0.14	-1.4
3,032,709	+		IAI47_14360	0.15	-0.2
3,032,748	+		IAI47_14360	0.17	+0.1
3,032,748	+		IAI47_14360	0.17	-0.5
3,032,749	-		IAI47_14360	0.17	-0.0
3,032,749	-		IAI47_14360	0.17	-0.0
3,032,903	+		IAI47_14360	0.23	-0.3
3,032,903	+		IAI47_14360	0.23	-1.6
3,032,903	+		IAI47_14360	0.23	+0.0
3,032,904	-		IAI47_14360	0.23	-1.3
3,032,954	+		IAI47_14360	0.25	-1.0
3,032,954	+		IAI47_14360	0.25	+0.0
3,032,955	-		IAI47_14360	0.25	-0.0
3,032,957	+		IAI47_14360	0.25	-1.8
3,032,957	+		IAI47_14360	0.25	+1.6
3,032,957	+		IAI47_14360	0.25	+0.8
3,032,957	+		IAI47_14360	0.25	-1.3
3,032,957	+		IAI47_14360	0.25	+0.8
3,032,958	-		IAI47_14360	0.25	-0.6
3,032,958	-		IAI47_14360	0.25	-2.0
3,032,958	-		IAI47_14360	0.25	-0.1
3,032,958	-		IAI47_14360	0.25	-0.6
3,033,185	+		IAI47_14360	0.35	-2.9
3,033,185	+		IAI47_14360	0.35	+0.2
3,033,186	-		IAI47_14360	0.35	-0.0
3,033,186	-		IAI47_14360	0.35	+0.2
3,033,193	-		IAI47_14360	0.35	+0.6
3,033,209	-		IAI47_14360	0.36	+0.6