Strain Fitness in Pantoea sp. MT58 around IAI47_14320

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
3,024,516	+				+1.4
3,024,517	-				+0.2
3,024,531	-				-0.5
3,024,533	+				+0.8
3,024,533	+				+0.2
3,024,533	+				-0.5
3,024,533	+				+1.5
3,024,533	+				+1.4
3,024,534	-				+0.9
3,024,558	+				-0.1
3,024,558	+				-0.8
3,024,559	-				-0.4
3,024,586	-				-0.2
3,024,586	-				-0.9
3,024,586	-				+0.4
3,024,589	+				-0.3
3,024,590	-				-0.6
3,024,590	-				+0.7
3,024,609	-				+0.5
3,024,609	-				+0.7
3,024,642	+				-0.8
3,024,642	+				+0.0
3,024,642	+				-1.6
3,024,643	-				-0.2
3,024,874	+				+0.2
3,024,874	+				+0.3
3,024,875	-				-2.8
3,024,933	+		IAI47_14315	0.19	+0.5
3,024,933	+		IAI47_14315	0.19	-1.6
3,024,933	+		IAI47_14315	0.19	+0.5
3,024,933	+		IAI47_14315	0.19	-0.3
3,024,933	+		IAI47_14315	0.19	-0.2
3,024,934	-		IAI47_14315	0.19	-0.2
3,024,934	-		IAI47_14315	0.19	-0.7
3,024,934	-		IAI47_14315	0.19	+0.8
3,024,934	-		IAI47_14315	0.19	+0.3
3,025,001	+		IAI47_14315	0.33	+1.6
3,025,001	+		IAI47_14315	0.33	-0.8
3,025,021	+		IAI47_14315	0.37	-2.1
3,025,021	+		IAI47_14315	0.37	-1.0
3,025,022	-		IAI47_14315	0.37	-1.2
3,025,054	+		IAI47_14315	0.43	+0.6
3,025,054	+		IAI47_14315	0.43	-1.7
3,025,054	+		IAI47_14315	0.43	-2.0
3,025,054	+		IAI47_14315	0.43	-1.0
3,025,054	+		IAI47_14315	0.43	+1.1
3,025,055	-		IAI47_14315	0.43	+0.1
3,025,115	+		IAI47_14315	0.55	+0.9
3,025,115	+		IAI47_14315	0.55	-0.5
3,025,116	-		IAI47_14315	0.56	-1.5
3,025,116	-		IAI47_14315	0.56	-1.1
3,025,129	+		IAI47_14315	0.58	-0.8
3,025,130	-		IAI47_14315	0.58	+0.8
3,025,162	-		IAI47_14315	0.65	+0.0
3,025,198	+		IAI47_14315	0.72	-0.6
3,025,198	+		IAI47_14315	0.72	+0.2
3,025,198	+		IAI47_14315	0.72	-0.3
3,025,198	+		IAI47_14315	0.72	+1.0
3,025,198	+		IAI47_14315	0.72	-1.1
3,025,198	+		IAI47_14315	0.72	-1.2
3,025,199	-		IAI47_14315	0.72	-0.2
3,025,199	-		IAI47_14315	0.72	-1.0
3,025,199	-		IAI47_14315	0.72	-0.2
3,025,199	-		IAI47_14315	0.72	+0.0
3,025,199	-		IAI47_14315	0.72	+0.2
3,025,199	-		IAI47_14315	0.72	-0.5
3,025,199	-		IAI47_14315	0.72	-0.2
3,025,199	-		IAI47_14315	0.72	+0.4
3,025,304	+				-1.5
3,025,304	+				+2.6
3,025,305	-				-0.2
3,025,340	+				-1.9
3,025,340	+				+2.2
3,025,341	-				-0.0
3,025,341	-				+0.5
3,025,367	+				+0.1
3,025,367	+				+0.4
3,025,367	+				+1.6
3,025,367	+				+2.4
3,025,368	-				+0.7
3,025,368	-				-0.6
3,025,368	-				-0.6
3,025,368	-				-0.2
3,025,368	-				+0.2
3,025,368	-				-0.2
3,025,368	-				+0.8
3,025,372	+				-1.4
3,025,372	+				-1.6
3,025,372	+				-0.4
3,025,372	+				-0.1
3,025,372	+				+2.8
3,025,372	+				-1.0
3,025,373	-				-0.4
3,025,373	-				-0.6
3,025,373	-				+1.1
3,025,373	-				+0.8
3,025,373	-				+0.3
3,025,373	-				+1.5
3,025,419	+				-0.3
3,025,419	+				-2.0
3,025,420	-				-1.2
3,025,420	-				+0.4
3,025,435	+				-0.3
3,025,436	-				-0.0
3,025,436	-				+0.6
3,025,436	-				+0.4
3,026,363	+				+0.5
3,026,363	+				-2.2
3,026,363	+				-1.0
3,026,364	-				-2.4
3,026,364	-				-1.4
3,026,377	-				+0.5
3,026,432	-		IAI47_14325	0.25	+0.0
3,026,522	+		IAI47_14325	0.67	+0.2
3,026,523	-		IAI47_14325	0.68	-0.7
3,026,590	-				+1.6
3,026,590	-				+0.0
3,026,590	-				+0.4
3,026,617	+				+0.1
3,026,618	-				-1.2
3,026,620	+				+0.4
3,026,621	-				+0.4
3,026,621	-				-0.9
3,026,675	+				-0.2
3,026,675	+				-0.1
3,026,676	-				-0.2
3,026,676	-				+1.8
3,026,690	+				-1.9
3,026,691	-				+0.8
3,026,691	-				+0.3
3,026,691	-				+0.5
3,026,691	-				+0.4
3,026,691	-				-1.0
3,026,749	+		IAI47_14330	0.12	-2.0
3,026,749	+		IAI47_14330	0.12	-0.2
3,026,750	-		IAI47_14330	0.12	+0.4
3,026,750	-		IAI47_14330	0.12	+1.6
3,026,831	+		IAI47_14330	0.19	-1.3
3,026,832	-		IAI47_14330	0.19	+0.4
3,027,008	+		IAI47_14330	0.35	-0.6
3,027,158	-		IAI47_14330	0.49	+0.4
3,027,255	+		IAI47_14330	0.57	-1.0
3,027,255	+		IAI47_14330	0.57	+1.5
3,027,256	-		IAI47_14330	0.58	+1.9