Strain Fitness in Pantoea sp. MT58 around IAI47_13760

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
2,914,643	-		IAI47_13755	0.63	-0.8
2,914,666	-		IAI47_13755	0.65	-2.4
2,914,670	-		IAI47_13755	0.65	-1.2
2,914,670	-		IAI47_13755	0.65	-1.6
2,914,670	-		IAI47_13755	0.65	-1.8
2,914,717	-		IAI47_13755	0.68	-1.2
2,914,797	+		IAI47_13755	0.72	-2.0
2,914,798	-		IAI47_13755	0.72	-0.8
2,914,798	-		IAI47_13755	0.72	+0.8
2,914,842	+		IAI47_13755	0.75	-0.8
2,914,871	-		IAI47_13755	0.76	-0.8
2,914,892	-		IAI47_13755	0.77	-1.2
2,915,029	+		IAI47_13755	0.85	-2.0
2,915,029	+		IAI47_13755	0.85	-1.2
2,915,029	+		IAI47_13755	0.85	-0.2
2,915,030	-		IAI47_13755	0.85	+1.8
2,915,030	-		IAI47_13755	0.85	-4.0
2,915,030	-		IAI47_13755	0.85	-1.6
2,915,030	-		IAI47_13755	0.85	-0.2
2,915,030	-		IAI47_13755	0.85	-1.8
2,915,030	-		IAI47_13755	0.85	-0.8
2,915,030	-		IAI47_13755	0.85	-2.4
2,915,030	-		IAI47_13755	0.85	-2.9
2,915,031	+		IAI47_13755	0.85	-0.2
2,915,031	+		IAI47_13755	0.85	-2.4
2,915,032	-		IAI47_13755	0.85	-2.6
2,915,032	-		IAI47_13755	0.85	-1.2
2,915,032	-		IAI47_13755	0.85	+2.3
2,915,059	-		IAI47_13755	0.87	-1.2
2,915,059	-		IAI47_13755	0.87	-0.2
2,915,083	-		IAI47_13755	0.88	-0.2
2,915,083	-		IAI47_13755	0.88	-2.6
2,915,083	-		IAI47_13755	0.88	-2.2
2,915,083	-		IAI47_13755	0.88	-2.0
2,915,083	-		IAI47_13755	0.88	-2.8
2,915,086	+		IAI47_13755	0.88	-1.2
2,915,087	-		IAI47_13755	0.88	-3.2
2,915,087	-		IAI47_13755	0.88	-2.4
2,915,087	-		IAI47_13755	0.88	-4.1
2,915,087	-		IAI47_13755	0.88	-2.2
2,915,102	-		IAI47_13755	0.89	-1.2
2,915,114	-				-1.2
2,915,114	-				-1.8
2,915,117	-				-0.8
2,915,132	-				-2.4
2,915,151	-				-2.2
2,915,151	-				-2.4
2,915,320	-				-2.2
2,915,328	+		IAI47_13760	0.11	-2.0
2,915,391	+		IAI47_13760	0.29	-3.7
2,915,392	-		IAI47_13760	0.29	-1.2
2,915,392	-		IAI47_13760	0.29	-0.8
2,915,505	+		IAI47_13760	0.61	-0.2
2,915,505	+		IAI47_13760	0.61	-2.0
2,915,505	+		IAI47_13760	0.61	-0.2
2,915,506	-		IAI47_13760	0.62	+0.2
2,915,545	-		IAI47_13760	0.73	-1.8
2,915,554	-		IAI47_13760	0.76	-1.6
2,915,554	-		IAI47_13760	0.76	-1.8
2,915,554	-		IAI47_13760	0.76	-1.8
2,915,561	-		IAI47_13760	0.78	-0.2
2,915,634	-				+0.8
2,915,634	-				-0.8
2,915,639	-				-1.8
2,915,748	+		IAI47_13765	0.30	-0.8
2,915,749	-		IAI47_13765	0.30	-2.0
2,915,749	-		IAI47_13765	0.30	-1.8
2,915,749	-		IAI47_13765	0.30	-0.2
2,915,902	-		IAI47_13765	0.69	-1.2
2,915,902	-		IAI47_13765	0.69	-0.8
2,915,918	-		IAI47_13765	0.73	-0.8
2,915,918	-		IAI47_13765	0.73	-1.2
2,915,948	-		IAI47_13765	0.81	-2.6
2,916,120	+				-1.6
2,916,121	-				-1.6
2,916,121	-				-0.8
2,916,186	+				-1.6
2,916,188	+				-2.0
2,916,189	-				-0.2
2,916,233	+				+0.0
2,916,233	+				+0.4
2,916,235	+				+0.8
2,916,244	+				+0.7
2,916,244	+				-0.2
2,916,244	+				+2.3
2,916,244	+				+0.6
2,916,245	-				+1.0
2,916,258	+				+1.3
2,916,280	+				-2.0
2,916,331	+				-0.6
2,916,340	-				-0.2
2,916,347	+				-1.6
2,916,347	+				-0.4
2,916,348	-				-1.2
2,916,348	-				-1.4
2,916,395	-				-1.8
2,916,395	-				-2.6
2,916,398	+				+0.6
2,916,399	-				-1.9
2,916,399	-				-2.2
2,916,419	+				-0.1
2,916,419	+				-0.2
2,916,420	-				-2.7
2,916,452	+				-0.4
2,916,452	+				+1.1
2,916,453	-				-3.5
2,916,453	-				-0.8
2,916,453	-				-3.2
2,916,453	-				-2.2
2,916,538	+				-2.4
2,916,538	+				+1.1
2,916,538	+				-1.6
2,916,570	+				+0.2
2,916,570	+				-1.7
2,916,570	+				+0.4
2,916,570	+				+0.4
2,916,570	+				+0.3
2,916,570	+				-1.7
2,916,570	+				-1.1
2,916,571	-				-2.0
2,916,571	-				-2.0
2,916,571	-				-1.2
2,916,577	+				-0.7
2,916,577	+				-1.0
2,916,578	-				-1.0
2,916,616	+				-0.7
2,916,616	+				-0.6
2,916,617	-				-1.2
2,916,626	+				-0.0
2,916,626	+				-0.5
2,916,626	+				+1.5
2,916,627	-				-1.2
2,916,627	-				-0.8
2,916,630	+				-1.1
2,916,630	+				-1.0
2,916,630	+				+0.3
2,916,630	+				-1.6
2,916,630	+				-0.4
2,916,631	-				-2.6
2,916,631	-				-2.0
2,916,631	-				-0.2
2,916,631	-				-2.0
2,916,634	+				-0.1
2,916,634	+				-1.0
2,916,634	+				-1.7
2,916,634	+				-2.0
2,916,634	+				+3.5
2,916,634	+				+0.2
2,916,635	-				-3.0
2,916,635	-				-2.6
2,916,635	-				-1.2