Strain Fitness in Pantoea sp. MT58 around IAI47_13270

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
2,804,550	+		IAI47_13260	0.68	+3.6
2,804,550	+		IAI47_13260	0.68	+0.5
2,804,550	+		IAI47_13260	0.68	-1.5
2,804,550	+		IAI47_13260	0.68	-1.6
2,804,550	+		IAI47_13260	0.68	-0.1
2,804,550	+		IAI47_13260	0.68	+0.3
2,804,550	+		IAI47_13260	0.68	+0.2
2,804,551	-		IAI47_13260	0.68	+0.3
2,804,551	-		IAI47_13260	0.68	+0.7
2,804,551	-		IAI47_13260	0.68	-0.3
2,804,551	-		IAI47_13260	0.68	+0.3
2,804,552	+		IAI47_13260	0.68	+0.0
2,804,552	+		IAI47_13260	0.68	+0.4
2,804,634	+		IAI47_13260	0.74	-0.7
2,804,635	-		IAI47_13260	0.74	+2.3
2,804,759	+		IAI47_13260	0.83	+2.2
2,804,760	-		IAI47_13260	0.83	+1.3
2,804,839	+		IAI47_13260	0.89	-1.3
2,804,840	-		IAI47_13260	0.89	-0.8
2,804,889	+				+2.7
2,804,889	+				+0.7
2,804,889	+				-0.8
2,804,889	+				-2.7
2,804,890	-				-0.6
2,804,999	+				+0.9
2,804,999	+				+0.2
2,805,055	+		IAI47_13265	0.14	-0.3
2,805,101	-		IAI47_13265	0.22	+0.9
2,805,189	+		IAI47_13265	0.38	-0.1
2,805,258	+		IAI47_13265	0.51	-0.8
2,805,295	+		IAI47_13265	0.58	-0.4
2,805,295	+		IAI47_13265	0.58	+0.3
2,805,296	-		IAI47_13265	0.58	+0.5
2,805,296	-		IAI47_13265	0.58	-0.8
2,805,296	-		IAI47_13265	0.58	-0.2
2,805,298	+		IAI47_13265	0.58	-0.4
2,805,500	-				+0.7
2,805,508	+				-0.4
2,805,509	-				+2.3
2,805,509	-				+0.2
2,805,509	-				-0.6
2,805,509	-				-0.3
2,805,509	-				-0.1
2,805,509	-				-0.1
2,805,541	+				-1.8
2,805,541	+				-1.6
2,805,542	-				-0.6
2,805,542	-				+0.5
2,805,571	+				-0.6
2,805,571	+				-0.8
2,805,571	+				-0.3
2,805,572	-				+0.7
2,805,572	-				-1.1
2,805,572	-				-2.8
2,805,724	+		IAI47_13270	0.29	-0.3
2,805,724	+		IAI47_13270	0.29	-0.5
2,805,724	+		IAI47_13270	0.29	-0.6
2,805,724	+		IAI47_13270	0.29	-0.8
2,805,724	+		IAI47_13270	0.29	+0.0
2,805,724	+		IAI47_13270	0.29	-1.3
2,805,724	+		IAI47_13270	0.29	+0.5
2,805,724	+		IAI47_13270	0.29	-1.1
2,805,725	-		IAI47_13270	0.29	-0.3
2,805,725	-		IAI47_13270	0.29	-1.1
2,805,730	+		IAI47_13270	0.29	+0.3
2,805,730	+		IAI47_13270	0.29	-0.5
2,805,730	+		IAI47_13270	0.29	-2.1
2,805,731	-		IAI47_13270	0.30	+0.1
2,805,731	-		IAI47_13270	0.30	-1.7
2,805,731	-		IAI47_13270	0.30	+1.3
2,805,731	-		IAI47_13270	0.30	+0.6
2,805,749	-		IAI47_13270	0.32	+0.2
2,805,764	-		IAI47_13270	0.34	-0.8
2,805,764	-		IAI47_13270	0.34	-0.6
2,805,971	+		IAI47_13270	0.61	+0.3
2,805,971	+		IAI47_13270	0.61	-0.3
2,805,971	+		IAI47_13270	0.61	-1.8
2,805,971	+		IAI47_13270	0.61	+0.1
2,805,971	+		IAI47_13270	0.61	-0.6
2,805,971	+		IAI47_13270	0.61	+0.3
2,805,972	-		IAI47_13270	0.62	-0.4
2,805,972	-		IAI47_13270	0.62	-1.3
2,805,972	-		IAI47_13270	0.62	-2.3
2,805,972	-		IAI47_13270	0.62	+0.4
2,805,972	-		IAI47_13270	0.62	-0.4
2,805,972	-		IAI47_13270	0.62	+0.2
2,805,972	-		IAI47_13270	0.62	-1.3
2,805,972	-		IAI47_13270	0.62	+0.7
2,805,972	-		IAI47_13270	0.62	+0.2
2,805,994	+		IAI47_13270	0.64	-1.3
2,805,994	+		IAI47_13270	0.64	-0.4
2,805,994	+		IAI47_13270	0.64	-0.8
2,805,995	-		IAI47_13270	0.65	-0.4
2,806,198	+				-1.5
2,806,198	+				+0.2
2,806,199	-				-1.7
2,806,199	-				+1.6
2,806,250	+				-0.3
2,806,251	-				-1.0
2,806,251	-				-0.8
2,806,274	+				-0.3
2,806,274	+				-0.5
2,806,274	+				+1.2
2,806,275	-				+0.6
2,806,275	-				-0.5
2,806,296	+				+0.6
2,806,317	+				-1.6
2,806,318	-				-0.8
2,806,318	-				-1.2
2,806,318	-				+0.1
2,806,320	-				+0.2
2,806,322	-				+1.2
2,806,322	-				-0.3
2,806,322	-				-0.0
2,806,394	+				+0.2
2,806,394	+				+3.1
2,806,394	+				+0.4
2,806,394	+				+0.9
2,806,394	+				-0.3
2,806,394	+				+2.6
2,806,394	+				+1.1
2,806,394	+				-0.6
2,806,395	-				+0.7
2,806,395	-				-0.3
2,806,395	-				+0.6
2,806,395	-				+1.4
2,806,395	-				+0.6
2,806,395	-				-1.7
2,806,395	-				+1.0
2,806,395	-				-1.4
2,806,503	+				+0.7
2,806,503	+				+0.2
2,806,503	+				+0.5
2,806,504	-				+0.6
2,806,571	+				-0.4
2,806,571	+				+0.0
2,806,572	-				+0.7
2,806,572	-				+0.7
2,806,572	-				-0.2
2,806,572	-				-0.1
2,806,583	+				-0.9
2,806,583	+				-2.1
2,806,584	-				-0.5
2,806,584	-				+0.3
2,806,588	+				+0.7
2,806,588	+				+0.4
2,806,589	-				+0.3
2,806,589	-				+0.3
2,806,589	-				+0.2
2,806,647	+				-0.3
2,806,655	-				+0.5
2,806,655	-				-0.3
2,806,658	+				-0.5
2,806,658	+				-0.1
2,806,658	+				+1.1
2,806,659	-				-0.4
2,806,659	-				+0.1
2,806,659	-				-0.4
2,806,659	-				-0.9
2,806,659	-				+0.1
2,806,676	+				-0.3
2,806,677	+				+0.0
2,806,678	-				-0.5
2,806,678	-				-0.7
2,806,678	-				+0.7
2,806,678	-				+0.3
2,806,728	+				-0.7
2,806,728	+				+0.2
2,806,728	+				-0.2
2,806,728	+				-0.4
2,806,728	+				+0.2
2,806,729	-				-0.1
2,806,729	-				+0.2
2,806,760	+		IAI47_13275	0.11	-0.0
2,806,760	+		IAI47_13275	0.11	-0.3
2,806,760	+		IAI47_13275	0.11	+0.6
2,806,760	+		IAI47_13275	0.11	+0.0
2,806,760	+		IAI47_13275	0.11	+0.7
2,806,760	+		IAI47_13275	0.11	-1.0
2,806,760	+		IAI47_13275	0.11	-0.0
2,806,760	+		IAI47_13275	0.11	+0.6
2,806,760	+		IAI47_13275	0.11	+0.6
2,806,761	-		IAI47_13275	0.11	+1.7
2,806,761	-		IAI47_13275	0.11	+1.0
2,806,761	-		IAI47_13275	0.11	-1.3
2,806,761	-		IAI47_13275	0.11	+1.0
2,806,761	-		IAI47_13275	0.11	+0.4
2,806,768	+		IAI47_13275	0.12	+0.2
2,806,768	+		IAI47_13275	0.12	+0.5
2,806,769	-		IAI47_13275	0.12	+0.1
2,806,769	-		IAI47_13275	0.12	-2.3
2,806,769	-		IAI47_13275	0.12	+1.4
2,806,769	-		IAI47_13275	0.12	+1.5
2,806,769	-		IAI47_13275	0.12	+0.0
2,806,769	-		IAI47_13275	0.12	-0.1
2,806,771	+		IAI47_13275	0.12	+2.0
2,806,771	+		IAI47_13275	0.12	+0.1
2,806,834	+		IAI47_13275	0.16	+0.7
2,806,834	+		IAI47_13275	0.16	+1.3
2,806,835	-		IAI47_13275	0.16	-0.8
2,806,835	-		IAI47_13275	0.16	-0.8
2,806,835	-		IAI47_13275	0.16	+0.9
2,806,835	-		IAI47_13275	0.16	-2.7
2,806,835	-		IAI47_13275	0.16	+0.0
2,806,981	+		IAI47_13275	0.25	-0.5
2,807,089	-		IAI47_13275	0.32	+0.4
2,807,089	-		IAI47_13275	0.32	+1.7
2,807,102	-		IAI47_13275	0.33	+0.5