Strain Fitness in Pantoea sp. MT58 around IAI47_13105

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
2,768,453	+		IAI47_13100	0.25	-0.2
2,768,453	+		IAI47_13100	0.25	+0.7
2,768,516	+		IAI47_13100	0.31	+0.4
2,768,516	+		IAI47_13100	0.31	+0.0
2,768,516	+		IAI47_13100	0.31	-0.8
2,768,516	+		IAI47_13100	0.31	+0.5
2,768,517	-		IAI47_13100	0.31	+0.2
2,768,517	-		IAI47_13100	0.31	+1.6
2,768,517	-		IAI47_13100	0.31	-0.1
2,768,517	-		IAI47_13100	0.31	+0.0
2,768,517	-		IAI47_13100	0.31	+2.1
2,768,517	-		IAI47_13100	0.31	-0.4
2,768,517	-		IAI47_13100	0.31	+0.1
2,768,517	-		IAI47_13100	0.31	+0.7
2,768,528	+		IAI47_13100	0.32	+2.1
2,768,529	-		IAI47_13100	0.32	+1.3
2,768,549	+		IAI47_13100	0.34	-1.8
2,768,549	+		IAI47_13100	0.34	-0.8
2,768,571	+		IAI47_13100	0.35	-0.1
2,768,571	+		IAI47_13100	0.35	-1.3
2,768,571	+		IAI47_13100	0.35	-0.1
2,768,571	+		IAI47_13100	0.35	-1.3
2,768,572	-		IAI47_13100	0.36	+0.7
2,768,614	+		IAI47_13100	0.39	-0.3
2,768,614	+		IAI47_13100	0.39	+0.2
2,768,656	-		IAI47_13100	0.43	+0.9
2,768,666	+		IAI47_13100	0.44	-0.3
2,768,666	+		IAI47_13100	0.44	+0.7
2,768,666	+		IAI47_13100	0.44	-1.1
2,768,666	+		IAI47_13100	0.44	+0.7
2,768,667	-		IAI47_13100	0.44	-2.1
2,768,667	-		IAI47_13100	0.44	+0.3
2,768,667	-		IAI47_13100	0.44	+0.0
2,768,766	+		IAI47_13100	0.52	-0.7
2,768,822	+		IAI47_13100	0.57	+0.3
2,768,822	+		IAI47_13100	0.57	-0.3
2,768,822	+		IAI47_13100	0.57	+1.0
2,768,823	-		IAI47_13100	0.57	-0.5
2,768,823	-		IAI47_13100	0.57	-0.7
2,768,922	+		IAI47_13100	0.66	-0.3
2,768,923	-		IAI47_13100	0.66	+0.2
2,768,950	+		IAI47_13100	0.68	+0.0
2,768,987	+		IAI47_13100	0.72	+0.6
2,769,135	+		IAI47_13100	0.84	+0.7
2,769,136	-		IAI47_13100	0.84	-0.8
2,769,136	-		IAI47_13100	0.84	-0.3
2,769,201	+				-1.7
2,769,202	-				-0.3
2,769,202	-				-0.7
2,769,208	+				-0.3
2,769,208	+				-1.4
2,769,208	+				+0.0
2,769,209	-				-1.4
2,769,211	+				+0.2
2,769,211	+				-1.1
2,769,211	+				-0.7
2,769,211	+				-1.0
2,769,212	-				+0.2
2,769,212	-				-0.5
2,769,212	-				-0.7
2,769,212	-				-1.2
2,769,212	-				-0.7
2,769,212	-				+0.7
2,769,275	-				+0.5
2,769,283	-				+0.0
2,769,315	+				-0.6
2,769,315	+				+1.3
2,769,315	+				-0.8
2,769,315	+				+0.3
2,769,315	+				-1.4
2,769,315	+				+0.1
2,769,315	+				+0.2
2,769,315	+				+0.1
2,769,315	+				-0.0
2,769,315	+				+0.7
2,769,316	-				-0.5
2,769,316	-				+0.3
2,769,316	-				-0.7
2,769,316	-				+0.0
2,769,345	+				-1.0
2,769,345	+				+0.2
2,769,346	-				+0.6
2,769,346	-				+0.1
2,769,351	+				+0.4
2,769,352	-				-1.1
2,769,352	-				+1.7
2,769,393	+				-0.1
2,769,394	-				-1.6
2,769,394	-				-0.1
2,769,435	+				+1.4
2,769,436	-				+0.4
2,769,449	-				+0.3
2,770,086	+				+1.7
2,770,087	-				-1.1
2,770,087	-				+0.4
2,770,161	+				+0.7
2,770,256	+				-0.6
2,770,256	+				-0.3
2,770,330	-				+0.6
2,770,344	+				+0.2
2,770,344	+				-0.7
2,770,345	-				-1.1
2,770,349	+				+0.6
2,770,349	+				+0.6
2,770,350	-				+1.6
2,770,360	+				-1.2
2,770,360	+				+0.6
2,770,360	+				-0.4
2,770,360	+				+0.0
2,770,361	-				+0.4
2,770,361	-				+1.0
2,770,361	-				+0.5
2,770,361	-				+0.6
2,770,373	+				+0.5
2,770,373	+				+1.0
2,770,374	-				+0.5
2,770,374	-				-0.3
2,770,385	+				-0.1
2,770,386	-				-1.6
2,770,472	+				-2.1
2,770,472	+				+1.0
2,770,472	+				+0.3
2,770,473	-				-0.1
2,770,473	-				+1.3
2,770,494	+				+0.3
2,770,505	+				-0.6
2,770,505	+				-0.3
2,770,505	+				+0.7
2,770,505	+				+1.3
2,770,506	-				+2.3
2,770,536	-		IAI47_13110	0.16	+1.7
2,770,536	-		IAI47_13110	0.16	+1.5
2,770,536	-		IAI47_13110	0.16	+0.7
2,770,536	-		IAI47_13110	0.16	+0.2
2,770,610	+		IAI47_13110	0.32	+0.1
2,770,610	+		IAI47_13110	0.32	+1.7
2,770,610	+		IAI47_13110	0.32	-0.1
2,770,611	-		IAI47_13110	0.32	-1.0
2,770,611	-		IAI47_13110	0.32	+1.8
2,770,638	-		IAI47_13110	0.38	-1.0
2,770,653	+		IAI47_13110	0.42	+1.7
2,770,653	+				+0.7
2,770,654	-		IAI47_13110	0.42	-0.3
2,770,655	+		IAI47_13110	0.42	-1.3
2,770,655	+		IAI47_13110	0.42	-0.3
2,770,655	+		IAI47_13110	0.42	+0.3
2,770,683	+		IAI47_13110	0.48	-2.3
2,770,683	+		IAI47_13110	0.48	-0.5
2,770,683	+		IAI47_13110	0.48	+0.7
2,770,689	+		IAI47_13110	0.50	+0.1
2,770,803	+		IAI47_13110	0.75	-0.6
2,770,803	+		IAI47_13110	0.75	-0.2
2,770,803	+		IAI47_13110	0.75	-0.1
2,770,803	+		IAI47_13110	0.75	-1.1
2,770,803	+		IAI47_13110	0.75	-0.5
2,770,803	+		IAI47_13110	0.75	+0.2
2,770,803	+		IAI47_13110	0.75	+0.8
2,770,803	+		IAI47_13110	0.75	-1.3
2,770,803	+		IAI47_13110	0.75	-0.1
2,770,804	-		IAI47_13110	0.75	+0.2
2,770,804	-		IAI47_13110	0.75	+0.2
2,770,804	-		IAI47_13110	0.75	+1.7
2,770,804	-		IAI47_13110	0.75	+0.2
2,770,804	-		IAI47_13110	0.75	-0.3
2,770,804	-		IAI47_13110	0.75	+1.0
2,770,804	-		IAI47_13110	0.75	-1.2
2,770,804	-		IAI47_13110	0.75	-0.3
2,770,804	-		IAI47_13110	0.75	-0.1
2,770,804	-		IAI47_13110	0.75	+0.2
2,770,805	+		IAI47_13110	0.76	+2.7
2,770,806	-		IAI47_13110	0.76	+0.3
2,770,806	-		IAI47_13110	0.76	+0.4
2,770,806	-		IAI47_13110	0.76	-0.7
2,770,806	-		IAI47_13110	0.76	-0.3
2,770,850	+		IAI47_13110	0.86	+0.2
2,770,898	+				+0.2
2,770,898	+				-0.3
2,770,899	-				-0.8
2,770,899	-				-0.8
2,770,920	+				-0.8
2,770,921	-				-0.6
2,770,926	-				-0.0
2,770,964	+				-0.3
2,770,965	-				+2.6
2,770,965	-				-1.1