Strain Fitness in Pantoea sp. MT58 around IAI47_08485

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
1,795,153	+		IAI47_08480	0.33	-0.1
1,795,154	-		IAI47_08480	0.33	-1.6
1,795,154	-		IAI47_08480	0.33	+2.5
1,795,154	-		IAI47_08480	0.33	-1.5
1,795,212	+		IAI47_08480	0.38	+1.0
1,795,213	-		IAI47_08480	0.38	-0.5
1,795,213	-		IAI47_08480	0.38	-1.1
1,795,213	-		IAI47_08480	0.38	+0.1
1,795,285	+		IAI47_08480	0.44	-0.7
1,795,285	+		IAI47_08480	0.44	-0.5
1,795,347	+		IAI47_08480	0.49	+0.3
1,795,347	+		IAI47_08480	0.49	-0.7
1,795,348	-		IAI47_08480	0.49	-1.3
1,795,348	-		IAI47_08480	0.49	+0.0
1,795,348	-		IAI47_08480	0.49	+0.4
1,795,376	-		IAI47_08480	0.51	+0.2
1,795,376	-		IAI47_08480	0.51	+1.7
1,795,535	+		IAI47_08480	0.64	+1.9
1,795,536	-		IAI47_08480	0.64	-0.1
1,795,536	-		IAI47_08480	0.64	+2.7
1,795,536	-		IAI47_08480	0.64	-0.9
1,795,602	+		IAI47_08480	0.69	-0.5
1,795,602	+		IAI47_08480	0.69	+0.8
1,795,784	+		IAI47_08480	0.84	+2.0
1,795,784	+		IAI47_08480	0.84	-0.2
1,795,784	+		IAI47_08480	0.84	-0.3
1,795,784	+		IAI47_08480	0.84	+1.7
1,795,785	-		IAI47_08480	0.84	+0.3
1,795,785	-		IAI47_08480	0.84	-0.7
1,795,785	-		IAI47_08480	0.84	+0.0
1,795,785	-		IAI47_08480	0.84	-1.1
1,795,785	-		IAI47_08480	0.84	+0.7
1,795,816	+		IAI47_08480	0.87	-0.6
1,795,816	+		IAI47_08480	0.87	-0.4
1,795,816	+		IAI47_08480	0.87	+0.9
1,795,817	-		IAI47_08480	0.87	+0.3
1,795,864	+				-0.9
1,795,864	+				+0.7
1,795,891	+				+0.5
1,795,891	+				+0.5
1,795,891	+				-0.0
1,795,891	+				+0.9
1,795,891	+				+0.2
1,795,891	+				+0.1
1,795,891	+				-0.3
1,795,891	+				+0.1
1,795,891	+				-0.3
1,795,892	-				+0.2
1,795,893	+				-0.3
1,795,893	+				-1.3
1,795,893	+				+0.2
1,795,893	+				+0.3
1,795,893	+				-0.2
1,795,893	+				-0.6
1,795,893	+				+0.7
1,795,893	+				+0.3
1,795,893	+				-1.6
1,795,893	+				+0.7
1,795,893	+				-0.0
1,795,893	+				+1.1
1,795,893	+				+0.8
1,795,893	+				+0.9
1,795,893	+				+1.8
1,795,894	-				-0.8
1,795,894	-				-1.9
1,795,894	-				-1.6
1,795,894	-				-0.3
1,795,894	-				+0.4
1,795,894	-				+0.3
1,795,894	-				+0.3
1,795,894	-				-0.2
1,795,894	-				-0.3
1,795,894	-				+1.7
1,795,894	-				+0.7
1,795,894	-				+0.5
1,795,897	+				+0.6
1,795,898	-				+0.7
1,795,898	-				-1.0
1,795,911	-				+0.5
1,795,948	+				-0.5
1,795,949	-				+0.1
1,795,961	-				-0.1
1,795,961	-				+0.2
1,795,961	-				+0.1
1,795,961	-				-0.2
1,795,961	-				-1.2
1,795,961	-				+0.3
1,796,035	+				+2.7
1,796,035	+				+1.0
1,796,036	-				+0.3
1,796,036	-				-0.0
1,796,064	+				-0.4
1,796,064	+				+0.5
1,796,164	+				+1.2
1,796,164	+				+1.2
1,796,165	-				+0.4
1,796,247	+		IAI47_08485	0.13	+1.4
1,796,248	-		IAI47_08485	0.13	+0.6
1,796,257	+		IAI47_08485	0.13	+0.4
1,796,314	+		IAI47_08485	0.17	+0.3
1,796,315	-		IAI47_08485	0.17	-1.4
1,796,336	-		IAI47_08485	0.19	+2.0
1,796,394	+		IAI47_08485	0.23	+1.2
1,796,394	+		IAI47_08485	0.23	-0.3
1,796,394	+		IAI47_08485	0.23	-1.0
1,796,394	+		IAI47_08485	0.23	+0.7
1,796,394	+		IAI47_08485	0.23	-0.9
1,796,394	+		IAI47_08485	0.23	+0.0
1,796,395	-		IAI47_08485	0.23	+1.7
1,796,395	-		IAI47_08485	0.23	+0.7
1,796,395	-		IAI47_08485	0.23	-1.9
1,796,395	-		IAI47_08485	0.23	+0.8
1,796,398	+		IAI47_08485	0.23	+0.0
1,796,398	+		IAI47_08485	0.23	+0.8
1,796,398	+		IAI47_08485	0.23	-0.4
1,796,398	+		IAI47_08485	0.23	+0.2
1,796,398	+		IAI47_08485	0.23	-0.4
1,796,398	+		IAI47_08485	0.23	+1.6
1,796,398	+		IAI47_08485	0.23	-1.2
1,796,398	+		IAI47_08485	0.23	+0.9
1,796,399	-		IAI47_08485	0.23	+0.7
1,796,399	-		IAI47_08485	0.23	-0.1
1,796,399	-		IAI47_08485	0.23	+0.9
1,796,399	-		IAI47_08485	0.23	+0.9
1,796,399	-		IAI47_08485	0.23	+0.5
1,796,399	-		IAI47_08485	0.23	+1.5
1,796,399	-		IAI47_08485	0.23	-2.8
1,796,399	-		IAI47_08485	0.23	-0.4
1,796,399	-		IAI47_08485	0.23	-0.3
1,796,399	-		IAI47_08485	0.23	+0.9
1,796,399	-		IAI47_08485	0.23	-0.1
1,796,399	-		IAI47_08485	0.23	-0.2
1,796,399	-		IAI47_08485	0.23	-1.8
1,796,399	-		IAI47_08485	0.23	-1.5
1,796,399	-		IAI47_08485	0.23	-0.5
1,796,407	+		IAI47_08485	0.24	+0.7
1,796,407	+		IAI47_08485	0.24	+1.8
1,796,407	+		IAI47_08485	0.24	-0.2
1,796,602	+		IAI47_08485	0.37	+3.5
1,796,603	-		IAI47_08485	0.37	-0.9
1,796,603	-		IAI47_08485	0.37	+0.6
1,796,629	+		IAI47_08485	0.39	+1.7
1,796,663	-		IAI47_08485	0.42	+1.7
1,796,668	+		IAI47_08485	0.42	+0.5
1,796,668	+		IAI47_08485	0.42	-1.0
1,796,668	+		IAI47_08485	0.42	+1.6
1,796,668	+		IAI47_08485	0.42	-0.5
1,796,668	+		IAI47_08485	0.42	-0.9
1,796,668	+		IAI47_08485	0.42	+1.2
1,796,669	-		IAI47_08485	0.42	-1.3
1,796,669	-		IAI47_08485	0.42	-0.6
1,796,669	-		IAI47_08485	0.42	+0.1
1,796,669	-		IAI47_08485	0.42	+0.5
1,796,669	-		IAI47_08485	0.42	+0.4
1,796,896	+		IAI47_08485	0.58	+0.2
1,796,896	+		IAI47_08485	0.58	+2.2
1,796,897	-		IAI47_08485	0.58	+1.0
1,796,897	-		IAI47_08485	0.58	-0.6
1,796,897	-		IAI47_08485	0.58	+1.4
1,796,931	+		IAI47_08485	0.60	-0.2
1,796,931	+		IAI47_08485	0.60	-2.0
1,796,932	-		IAI47_08485	0.60	+0.7
1,796,947	+		IAI47_08485	0.61	+0.6
1,796,948	-		IAI47_08485	0.61	+0.1
1,796,971	+		IAI47_08485	0.63	-1.1
1,796,972	-		IAI47_08485	0.63	-0.8
1,797,019	+		IAI47_08485	0.66	+0.3
1,797,020	-		IAI47_08485	0.66	+0.2
1,797,055	+		IAI47_08485	0.69	-0.9
1,797,165	+		IAI47_08485	0.76	-1.1
1,797,188	-		IAI47_08485	0.78	-0.3
1,797,188	-		IAI47_08485	0.78	+0.9
1,797,239	-		IAI47_08485	0.81	-0.6
1,797,308	-		IAI47_08485	0.86	+0.1
1,797,349	+		IAI47_08485	0.89	+0.7
1,797,350	-		IAI47_08485	0.89	-1.5
1,797,401	+				+0.3
1,797,402	-				+1.5
1,797,402	-				+0.8
1,797,402	-				-0.3
1,797,402	-				+0.7
1,797,402	-				+0.0
1,797,402	-				+0.5
1,797,439	+				-0.1
1,797,439	+				-0.9
1,797,439	+				-1.0
1,797,440	-				-0.0
1,797,440	-				+0.4
1,797,442	+				+1.5
1,797,443	-				-0.0
1,797,443	-				+1.9
1,797,525	+				+0.4
1,797,526	-				+1.4
1,797,526	-				-1.3
1,797,526	-				-1.1
1,797,526	-				-0.1
1,797,558	+				+0.5
1,797,558	+				-0.6
1,797,558	+				+1.1
1,797,558	+				-0.4
1,797,559	-				+0.5
1,797,559	-				-0.2
1,797,559	-				+0.4
1,797,559	-				+0.1
1,797,562	+				+0.4
1,797,562	+				-0.0
1,797,562	+				+0.2
1,797,562	+				+0.1
1,797,562	+				-0.1
1,797,563	-				-0.2
1,797,563	-				+0.9
1,797,563	-				-0.1
1,797,563	-				-0.4
1,797,563	-				-0.6
1,797,563	-				-0.1
1,797,563	-				-2.5
1,797,567	+				+0.7
1,797,567	+				-0.5
1,797,567	+				-0.3
1,797,567	+				+0.2
1,797,567	+				+0.3
1,797,567	+				-1.0
1,797,567	+				-1.1
1,797,567	+				+2.5
1,797,567	+				+0.0
1,797,568	-				-0.3
1,797,568	-				+1.4
1,797,568	-				-0.5
1,797,568	-				-0.1
1,797,568	-				+1.1
1,797,568	-				+0.4
1,797,568	-				+1.0
1,797,568	-				+0.2
1,797,568	-				+0.6
1,797,569	+				+0.1
1,797,570	-				-2.1
1,797,570	-				+0.9
1,797,602	+				+1.6
1,797,602	+				-0.6
1,797,729	+		IAI47_08490	0.13	-1.3
1,797,791	+		IAI47_08490	0.20	+0.8
1,797,792	-		IAI47_08490	0.20	-0.9
1,797,792	-		IAI47_08490	0.20	+1.3
1,797,792	-		IAI47_08490	0.20	+0.9
1,797,792	-		IAI47_08490	0.20	-0.0
1,797,792	-		IAI47_08490	0.20	-0.5
1,797,792	-		IAI47_08490	0.20	-2.6
1,797,792	-		IAI47_08490	0.20	+1.0
1,797,792	-		IAI47_08490	0.20	+1.2
1,797,801	+		IAI47_08490	0.21	+0.4
1,797,801	+		IAI47_08490	0.21	+0.5
1,797,801	+		IAI47_08490	0.21	+0.2
1,797,801	+		IAI47_08490	0.21	+0.8
1,797,802	-		IAI47_08490	0.22	+0.2
1,797,802	-		IAI47_08490	0.22	+0.7
1,797,802	-		IAI47_08490	0.22	-0.6
1,797,802	-		IAI47_08490	0.22	+1.1
1,797,802	-		IAI47_08490	0.22	+0.3
1,797,823	+		IAI47_08490	0.24	+0.6
1,797,823	+		IAI47_08490	0.24	-0.4
1,797,823	+		IAI47_08490	0.24	-1.4
1,797,829	+		IAI47_08490	0.25	-1.9
1,797,830	-		IAI47_08490	0.25	+0.9
1,797,893	-		IAI47_08490	0.32	+0.2
1,797,917	-		IAI47_08490	0.35	+1.0
1,797,917	-		IAI47_08490	0.35	-0.6
1,797,921	+		IAI47_08490	0.35	+0.3
1,797,922	-		IAI47_08490	0.35	-0.7
1,797,940	-		IAI47_08490	0.37	+0.0
1,797,948	+		IAI47_08490	0.38	-0.9
1,797,948	+		IAI47_08490	0.38	+0.4
1,797,949	-		IAI47_08490	0.38	+1.2
1,797,958	+		IAI47_08490	0.39	+2.1
1,797,958	+		IAI47_08490	0.39	-1.3
1,797,958	+		IAI47_08490	0.39	+0.4
1,797,958	+		IAI47_08490	0.39	+0.1
1,797,958	+		IAI47_08490	0.39	+1.3
1,797,959	-		IAI47_08490	0.39	-0.9
1,797,959	-		IAI47_08490	0.39	-1.2
1,797,959	-		IAI47_08490	0.39	-1.1
1,797,959	-		IAI47_08490	0.39	+1.3
1,797,959	-		IAI47_08490	0.39	-0.3
1,797,975	+		IAI47_08490	0.41	+0.1
1,797,975	+		IAI47_08490	0.41	+1.4
1,797,979	+		IAI47_08490	0.42	+0.0
1,797,979	+		IAI47_08490	0.42	-1.9
1,797,980	-		IAI47_08490	0.42	-0.3
1,797,980	-		IAI47_08490	0.42	-0.9
1,797,980	-		IAI47_08490	0.42	-0.6
1,798,032	+		IAI47_08490	0.48	-0.2
1,798,070	-		IAI47_08490	0.52	-0.8
1,798,211	+		IAI47_08490	0.68	+0.2
1,798,211	+		IAI47_08490	0.68	-0.4
1,798,211	+		IAI47_08490	0.68	+0.1
1,798,211	+		IAI47_08490	0.68	-1.9
1,798,211	+		IAI47_08490	0.68	-0.4
1,798,460	+				+0.1
1,798,460	+				-0.7
1,798,461	-				+0.1
1,798,461	-				+1.1
1,798,485	+				-2.2
1,798,491	+				-0.7
1,798,492	-				-0.0
1,798,492	-				-1.5
1,798,492	-				-2.1
1,798,505	+				+3.0
1,798,505	+				+0.7