Strain Fitness in Pantoea sp. MT58 around IAI47_06765

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
1,410,499	-				+1.1
1,410,569	+				+0.3
1,410,584	+		IAI47_06760	0.11	-3.0
1,410,594	-		IAI47_06760	0.12	-0.1
1,410,594	-		IAI47_06760	0.12	-0.8
1,410,594	-		IAI47_06760	0.12	-1.0
1,410,700	-		IAI47_06760	0.24	-0.3
1,410,762	+		IAI47_06760	0.31	+1.2
1,410,762	+		IAI47_06760	0.31	-0.3
1,410,762	+		IAI47_06760	0.31	-0.8
1,410,762	+		IAI47_06760	0.31	+0.0
1,410,762	+		IAI47_06760	0.31	+0.3
1,410,763	-		IAI47_06760	0.31	-0.5
1,410,763	-		IAI47_06760	0.31	-2.3
1,410,803	+		IAI47_06760	0.35	+1.3
1,410,804	-		IAI47_06760	0.35	-1.4
1,410,828	+		IAI47_06760	0.38	+1.1
1,410,828	+		IAI47_06760	0.38	+0.5
1,410,828	+		IAI47_06760	0.38	-0.1
1,410,828	+		IAI47_06760	0.38	+0.7
1,410,828	+		IAI47_06760	0.38	+0.3
1,410,828	+		IAI47_06760	0.38	+1.3
1,410,828	+		IAI47_06760	0.38	+0.6
1,410,828	+		IAI47_06760	0.38	-1.1
1,410,828	+		IAI47_06760	0.38	+1.3
1,410,829	-		IAI47_06760	0.38	+0.7
1,410,829	-		IAI47_06760	0.38	-0.2
1,410,901	-		IAI47_06760	0.46	+0.9
1,410,940	+		IAI47_06760	0.51	+0.4
1,410,940	+		IAI47_06760	0.51	-0.8
1,410,940	+		IAI47_06760	0.51	-0.1
1,410,941	-		IAI47_06760	0.51	+0.6
1,410,973	+		IAI47_06760	0.54	+1.0
1,411,002	+		IAI47_06760	0.58	+1.6
1,411,002	+		IAI47_06760	0.58	+0.1
1,411,002	+		IAI47_06760	0.58	+0.4
1,411,002	+		IAI47_06760	0.58	+1.5
1,411,003	-		IAI47_06760	0.58	+1.0
1,411,003	-		IAI47_06760	0.58	+0.7
1,411,003	-		IAI47_06760	0.58	-0.3
1,411,006	+		IAI47_06760	0.58	-0.6
1,411,125	+		IAI47_06760	0.71	+1.4
1,411,390	+				-0.8
1,411,391	-				-0.3
1,411,391	-				+2.0
1,411,424	+				+0.7
1,411,425	-				-0.5
1,411,426	+				+0.3
1,411,427	-				-0.8
1,411,427	-				+0.6
1,411,427	-				-1.2
1,411,453	+				+0.7
1,411,453	+				-0.3
1,411,453	+				-0.3
1,411,453	+				+0.1
1,411,453	+				-1.3
1,411,454	-				+0.1
1,411,454	-				+0.7
1,411,487	+				+0.3
1,411,675	+		IAI47_06765	0.25	+0.6
1,411,676	-		IAI47_06765	0.26	-0.7
1,411,738	+		IAI47_06765	0.34	+0.3
1,411,738	+		IAI47_06765	0.34	-0.6
1,411,738	+		IAI47_06765	0.34	+0.4
1,411,738	+		IAI47_06765	0.34	-0.4
1,411,738	+		IAI47_06765	0.34	-0.8
1,411,738	+		IAI47_06765	0.34	-0.8
1,411,739	-		IAI47_06765	0.35	-0.7
1,411,739	-		IAI47_06765	0.35	-0.1
1,411,739	-		IAI47_06765	0.35	-1.4
1,411,739	-		IAI47_06765	0.35	-0.6
1,411,739	-		IAI47_06765	0.35	-0.3
1,411,739	-		IAI47_06765	0.35	+0.2
1,411,742	+		IAI47_06765	0.35	-0.6
1,411,743	-		IAI47_06765	0.35	+0.2
1,411,743	-		IAI47_06765	0.35	-0.1
1,411,750	+		IAI47_06765	0.36	-1.0
1,411,751	-		IAI47_06765	0.36	+0.6
1,411,751	-		IAI47_06765	0.36	-0.6
1,411,768	+		IAI47_06765	0.39	-0.0
1,411,768	+		IAI47_06765	0.39	+0.2
1,411,769	-		IAI47_06765	0.39	-0.7
1,411,769	-		IAI47_06765	0.39	+0.4
1,411,870	+		IAI47_06765	0.54	-0.1
1,411,870	+		IAI47_06765	0.54	-1.5
1,411,870	+		IAI47_06765	0.54	-0.6
1,411,870	+		IAI47_06765	0.54	-1.6
1,411,871	-		IAI47_06765	0.54	-2.8
1,411,871	-		IAI47_06765	0.54	-0.3
1,411,871	-		IAI47_06765	0.54	-0.4
1,411,871	-		IAI47_06765	0.54	+1.6
1,411,871	-		IAI47_06765	0.54	-0.6
1,411,871	-		IAI47_06765	0.54	-1.3
1,411,876	+		IAI47_06765	0.54	+0.3
1,411,876	+		IAI47_06765	0.54	+0.7
1,411,876	+		IAI47_06765	0.54	+0.3
1,411,876	+		IAI47_06765	0.54	-1.8
1,411,876	+		IAI47_06765	0.54	+1.7
1,411,877	-		IAI47_06765	0.55	-0.8
1,411,906	+		IAI47_06765	0.59	-0.1
1,411,906	+		IAI47_06765	0.59	-0.1
1,411,907	-		IAI47_06765	0.59	+1.3
1,411,907	-		IAI47_06765	0.59	-0.0
1,411,962	+		IAI47_06765	0.67	+0.0
1,412,032	-		IAI47_06765	0.77	+0.7
1,412,051	+		IAI47_06765	0.80	-0.8
1,412,052	-		IAI47_06765	0.80	-0.6
1,412,052	-		IAI47_06765	0.80	+1.8
1,412,071	+		IAI47_06765	0.83	+0.4
1,412,180	+				-1.4
1,412,180	+				-0.3
1,412,180	+				-0.3
1,412,180	+				-1.3
1,412,180	+				-0.2
1,412,180	+				-0.1
1,412,180	+				+1.7
1,412,180	+				+0.9
1,412,181	-				+0.7
1,412,181	-				+0.7
1,412,181	-				+0.3
1,412,181	-				-0.5
1,412,181	-				-0.8
1,412,181	-				-0.6
1,412,238	+		IAI47_06770	0.14	-0.3
1,412,238	+		IAI47_06770	0.14	+0.7
1,412,239	-		IAI47_06770	0.14	-0.8
1,412,239	-		IAI47_06770	0.14	+0.5
1,412,239	-		IAI47_06770	0.14	+0.0
1,412,292	-		IAI47_06770	0.27	-0.1
1,412,323	+		IAI47_06770	0.35	-0.6
1,412,323	+		IAI47_06770	0.35	-0.3
1,412,324	-		IAI47_06770	0.36	+0.2
1,412,324	-		IAI47_06770	0.36	+1.3
1,412,331	+		IAI47_06770	0.37	-0.9
1,412,366	+		IAI47_06770	0.46	-0.2
1,412,366	+		IAI47_06770	0.46	+1.7
1,412,367	-		IAI47_06770	0.47	-0.3
1,412,367	-		IAI47_06770	0.47	-0.0
1,412,367	-		IAI47_06770	0.47	+0.2
1,412,368	+		IAI47_06770	0.47	-1.4
1,412,368	+		IAI47_06770	0.47	+0.2
1,412,368	+		IAI47_06770	0.47	-0.0
1,412,369	-		IAI47_06770	0.47	+0.5
1,412,369	-		IAI47_06770	0.47	-1.1
1,412,369	-		IAI47_06770	0.47	+0.0
1,412,445	+		IAI47_06770	0.66	+0.1
1,412,445	+		IAI47_06770	0.66	-1.7
1,412,445	+		IAI47_06770	0.66	-1.2
1,412,446	-		IAI47_06770	0.67	+0.6
1,412,446	-		IAI47_06770	0.67	-0.3
1,412,478	-		IAI47_06770	0.75	-1.1
1,412,495	+		IAI47_06770	0.79	+0.3
1,412,509	+		IAI47_06770	0.83	+0.2
1,412,509	+		IAI47_06770	0.83	-1.3
1,412,509	+		IAI47_06770	0.83	+0.1
1,412,510	-		IAI47_06770	0.83	+0.7
1,412,510	-		IAI47_06770	0.83	+0.2
1,412,511	+		IAI47_06770	0.83	-0.4
1,412,511	+		IAI47_06770	0.83	-0.3
1,412,511	+		IAI47_06770	0.83	+1.7
1,412,511	+		IAI47_06770	0.83	-0.8
1,412,511	+		IAI47_06770	0.83	+0.5
1,412,512	-		IAI47_06770	0.83	+1.7
1,412,512	-		IAI47_06770	0.83	+0.7
1,412,512	-		IAI47_06770	0.83	-0.5
1,412,512	-		IAI47_06770	0.83	-0.7
1,412,521	+		IAI47_06770	0.86	+2.5
1,412,521	+		IAI47_06770	0.86	+0.7
1,412,521	+		IAI47_06770	0.86	-2.1
1,412,521	+		IAI47_06770	0.86	+1.1
1,412,522	-		IAI47_06770	0.86	-1.0
1,412,522	-		IAI47_06770	0.86	+0.3
1,412,531	+		IAI47_06770	0.88	-0.3
1,412,531	+		IAI47_06770	0.88	-0.3
1,412,532	-		IAI47_06770	0.89	-0.5
1,412,532	-		IAI47_06770	0.89	-0.6
1,412,545	+				+0.5
1,412,546	-				-1.6
1,412,546	-				+1.3
1,412,608	+				-0.9
1,412,608	+				+0.7
1,412,609	-				-0.4
1,412,609	-				-1.0
1,412,609	-				+1.0
1,412,609	-				-0.7
1,412,609	-				-2.8
1,412,609	-				-0.8
1,412,644	+				-1.1
1,412,644	+				-1.0
1,412,644	+				+0.7
1,412,645	-				+0.1
1,412,645	-				-0.4
1,412,645	-				+0.7
1,412,645	-				+0.7
1,412,645	-				-0.7
1,412,645	-				+0.2
1,412,645	-				+0.7
1,412,743	+				+0.3
1,412,743	+				-0.6
1,412,743	+				+0.1
1,412,743	+				-0.6
1,412,743	+				+0.1
1,412,744	-				+0.4
1,412,744	-				-0.5
1,412,744	-				+0.3
1,412,744	-				+1.6
1,412,744	-				+0.1
1,412,785	+				-0.6
1,412,785	+				-1.4
1,412,785	+				+0.3
1,412,807	+				+1.0
1,412,807	+				+1.3
1,412,808	-				-0.1
1,412,808	-				+1.4
1,412,808	-				+0.3
1,412,808	-				-1.1
1,412,808	-				+0.7
1,412,808	-				+2.0
1,412,808	-				-0.3
1,412,808	-				-0.1
1,412,812	-				+1.4
1,412,812	-				-0.2
1,412,828	-				-2.7