Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_06370 and IAI47_06375 are separated by 17 nucleotides IAI47_06375 and IAI47_06380 are separated by 2 nucleotides
IAI47_06370: IAI47_06370 - NADH-quinone oxidoreductase subunit C/D, at 1,295,099 to 1,296,898
_06370
IAI47_06375: IAI47_06375 - NADH-quinone oxidoreductase subunit NuoE, at 1,296,916 to 1,297,416
_06375
IAI47_06380: IAI47_06380 - NADH-quinone oxidoreductase subunit NuoF, at 1,297,419 to 1,298,759
_06380
Position (kb) 1296
1297
1298 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1295.954 kb on + strand, within IAI47_06370 at 1295.982 kb on + strand, within IAI47_06370 at 1296.060 kb on - strand, within IAI47_06370 at 1296.061 kb on + strand, within IAI47_06370 at 1296.276 kb on - strand, within IAI47_06370 at 1296.276 kb on - strand, within IAI47_06370 at 1296.335 kb on + strand, within IAI47_06370 at 1296.341 kb on - strand, within IAI47_06370 at 1296.425 kb on + strand, within IAI47_06370 at 1296.486 kb on - strand, within IAI47_06370 at 1296.486 kb on - strand, within IAI47_06370 at 1296.532 kb on + strand, within IAI47_06370 at 1296.556 kb on + strand, within IAI47_06370 at 1296.557 kb on - strand, within IAI47_06370 at 1296.557 kb on - strand, within IAI47_06370 at 1296.617 kb on - strand at 1296.731 kb on + strand at 1296.764 kb on + strand at 1296.852 kb on + strand at 1296.852 kb on + strand at 1296.853 kb on - strand at 1296.854 kb on + strand at 1296.855 kb on - strand at 1296.855 kb on - strand at 1296.863 kb on - strand at 1296.866 kb on - strand at 1296.878 kb on - strand at 1296.896 kb on + strand at 1296.900 kb on + strand at 1296.900 kb on + strand at 1296.900 kb on + strand at 1296.901 kb on - strand at 1296.901 kb on - strand at 1296.901 kb on - strand at 1296.924 kb on + strand at 1296.939 kb on + strand at 1297.098 kb on - strand at 1297.098 kb on - strand, within IAI47_06375 at 1297.186 kb on + strand, within IAI47_06375 at 1297.219 kb on + strand, within IAI47_06375 at 1297.437 kb on - strand at 1297.495 kb on + strand at 1297.521 kb on + strand at 1297.521 kb on + strand at 1297.713 kb on + strand, within IAI47_06380 at 1297.714 kb on - strand, within IAI47_06380 at 1297.813 kb on + strand, within IAI47_06380 at 1297.824 kb on + strand, within IAI47_06380 at 1297.825 kb on - strand, within IAI47_06380 at 1297.890 kb on - strand, within IAI47_06380 at 1297.952 kb on + strand, within IAI47_06380 at 1297.953 kb on - strand, within IAI47_06380 at 1297.953 kb on - strand, within IAI47_06380 at 1298.075 kb on - strand, within IAI47_06380 at 1298.138 kb on + strand, within IAI47_06380
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 1,295,954 + IAI47_06370 0.47 -3.4 1,295,982 + IAI47_06370 0.49 -0.3 1,296,060 - IAI47_06370 0.53 -1.9 1,296,061 + IAI47_06370 0.53 -1.6 1,296,276 - IAI47_06370 0.65 +0.7 1,296,276 - IAI47_06370 0.65 -0.9 1,296,335 + IAI47_06370 0.69 -0.9 1,296,341 - IAI47_06370 0.69 -1.3 1,296,425 + IAI47_06370 0.74 +0.2 1,296,486 - IAI47_06370 0.77 -2.1 1,296,486 - IAI47_06370 0.77 +0.7 1,296,532 + IAI47_06370 0.80 -1.3 1,296,556 + IAI47_06370 0.81 -1.1 1,296,557 - IAI47_06370 0.81 -0.9 1,296,557 - IAI47_06370 0.81 -0.3 1,296,617 - -1.3 1,296,731 + -0.3 1,296,764 + -1.6 1,296,852 + -2.1 1,296,852 + -0.9 1,296,853 - -1.9 1,296,854 + -0.3 1,296,855 - -1.6 1,296,855 - -1.3 1,296,863 - -0.3 1,296,866 - -1.3 1,296,878 - -2.3 1,296,896 + -0.9 1,296,900 + -1.3 1,296,900 + -0.9 1,296,900 + -1.9 1,296,901 - -0.9 1,296,901 - -1.6 1,296,901 - -1.9 1,296,924 + -1.6 1,296,939 + -2.4 1,297,098 - -0.9 1,297,098 - IAI47_06375 0.36 -0.9 1,297,186 + IAI47_06375 0.54 -2.6 1,297,219 + IAI47_06375 0.60 -1.3 1,297,437 - -0.9 1,297,495 + -2.1 1,297,521 + -2.4 1,297,521 + -0.9 1,297,713 + IAI47_06380 0.22 -2.1 1,297,714 - IAI47_06380 0.22 -1.6 1,297,813 + IAI47_06380 0.29 -1.3 1,297,824 + IAI47_06380 0.30 -0.9 1,297,825 - IAI47_06380 0.30 -0.9 1,297,890 - IAI47_06380 0.35 -0.3 1,297,952 + IAI47_06380 0.40 -0.3 1,297,953 - IAI47_06380 0.40 -1.3 1,297,953 - IAI47_06380 0.40 -0.9 1,298,075 - IAI47_06380 0.49 -0.3 1,298,138 + IAI47_06380 0.54 -1.3
Or see this region's nucleotide sequence