Strain Fitness in Pantoea sp. MT58 around IAI47_04960

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
1,041,240	+		IAI47_04955	0.45	-0.8
1,041,240	+		IAI47_04955	0.45	+0.3
1,041,240	+		IAI47_04955	0.45	+0.0
1,041,240	+		IAI47_04955	0.45	-1.4
1,041,241	-		IAI47_04955	0.45	+0.0
1,041,241	-		IAI47_04955	0.45	-1.5
1,041,241	-		IAI47_04955	0.45	-0.8
1,041,241	-		IAI47_04955	0.45	-2.0
1,041,245	+		IAI47_04955	0.45	-1.3
1,041,252	+		IAI47_04955	0.46	-2.1
1,041,253	-		IAI47_04955	0.46	+0.3
1,041,253	-		IAI47_04955	0.46	-1.3
1,041,253	-		IAI47_04955	0.46	-1.6
1,041,278	+		IAI47_04955	0.48	+1.7
1,041,278	+		IAI47_04955	0.48	-0.9
1,041,279	-		IAI47_04955	0.48	+0.1
1,041,279	-		IAI47_04955	0.48	-0.0
1,041,322	+		IAI47_04955	0.52	-0.1
1,041,323	-		IAI47_04955	0.52	+1.5
1,041,323	-		IAI47_04955	0.52	+1.4
1,041,323	-		IAI47_04955	0.52	+0.3
1,041,323	-		IAI47_04955	0.52	+0.7
1,041,323	-		IAI47_04955	0.52	-0.9
1,041,323	-		IAI47_04955	0.52	-0.6
1,041,384	+		IAI47_04955	0.57	+0.1
1,041,385	-		IAI47_04955	0.57	-0.8
1,041,385	-		IAI47_04955	0.57	+0.5
1,041,385	-		IAI47_04955	0.57	-0.6
1,041,385	-		IAI47_04955	0.57	+0.9
1,041,393	+		IAI47_04955	0.58	+0.2
1,041,393	+		IAI47_04955	0.58	-1.3
1,041,393	+		IAI47_04955	0.58	-0.8
1,041,393	+		IAI47_04955	0.58	-0.5
1,041,393	+		IAI47_04955	0.58	+1.2
1,041,394	-		IAI47_04955	0.58	+1.2
1,041,477	+		IAI47_04955	0.65	-1.8
1,041,478	-		IAI47_04955	0.65	+0.1
1,041,478	-		IAI47_04955	0.65	+0.7
1,041,479	+		IAI47_04955	0.65	+1.3
1,041,479	+		IAI47_04955	0.65	-0.6
1,041,479	+		IAI47_04955	0.65	+1.7
1,041,479	+		IAI47_04955	0.65	-0.6
1,041,479	+		IAI47_04955	0.65	-1.8
1,041,479	+		IAI47_04955	0.65	-0.4
1,041,480	-		IAI47_04955	0.65	+0.0
1,041,480	-		IAI47_04955	0.65	-0.9
1,041,480	-		IAI47_04955	0.65	-1.0
1,041,480	-		IAI47_04955	0.65	+0.3
1,041,480	-		IAI47_04955	0.65	+0.5
1,041,480	-		IAI47_04955	0.65	+0.4
1,041,480	-		IAI47_04955	0.65	+0.1
1,041,524	+		IAI47_04955	0.69	+0.6
1,041,524	+		IAI47_04955	0.69	+0.7
1,041,525	-		IAI47_04955	0.69	-0.7
1,041,525	-		IAI47_04955	0.69	-0.3
1,041,611	+		IAI47_04955	0.76	+1.1
1,041,611	+		IAI47_04955	0.76	-2.2
1,041,612	-		IAI47_04955	0.76	-0.6
1,041,627	+		IAI47_04955	0.77	-0.3
1,041,628	-		IAI47_04955	0.77	+0.3
1,041,704	+		IAI47_04955	0.84	-0.4
1,041,705	-		IAI47_04955	0.84	-0.1
1,041,714	+		IAI47_04955	0.85	+0.4
1,041,715	-		IAI47_04955	0.85	-0.6
1,041,715	-		IAI47_04955	0.85	-1.3
1,041,715	-		IAI47_04955	0.85	-1.4
1,041,756	+		IAI47_04955	0.88	-0.3
1,041,756	+		IAI47_04955	0.88	-0.6
1,041,756	+		IAI47_04955	0.88	-0.8
1,041,756	+		IAI47_04955	0.88	-0.5
1,041,757	-		IAI47_04955	0.88	+0.9
1,041,757	-		IAI47_04955	0.88	-1.3
1,041,762	+		IAI47_04955	0.89	-1.1
1,041,762	+		IAI47_04955	0.89	+0.2
1,041,762	+		IAI47_04955	0.89	-0.7
1,041,762	+		IAI47_04955	0.89	+0.3
1,041,762	+		IAI47_04955	0.89	-0.1
1,041,762	+		IAI47_04955	0.89	-1.2
1,041,762	+		IAI47_04955	0.89	+1.7
1,041,763	-		IAI47_04955	0.89	+0.2
1,041,763	-		IAI47_04955	0.89	-0.6
1,041,763	-		IAI47_04955	0.89	+0.9
1,041,763	-		IAI47_04955	0.89	+0.2
1,041,763	-		IAI47_04955	0.89	+0.0
1,041,801	+				-1.0
1,041,801	+				-0.4
1,041,801	+				+0.2
1,041,801	+				-2.7
1,041,801	+				-0.7
1,041,802	-				-0.8
1,041,802	-				-0.2
1,041,802	-				-0.8
1,041,802	-				-1.0
1,041,802	-				-1.5
1,041,809	+				+1.0
1,041,809	+				+0.7
1,041,809	+				-0.8
1,041,809	+				+0.1
1,041,809	+				-0.5
1,041,810	-				+0.4
1,041,810	-				+2.3
1,041,810	-				-0.3
1,041,810	-				+0.1
1,041,810	-				+1.0
1,041,810	-				+0.2
1,041,822	+				+0.1
1,041,845	-				+0.8
1,041,865	-				+1.2
1,041,894	+				+0.2
1,041,894	+				-0.5
1,041,894	+				+0.3
1,041,894	+				+0.7
1,041,894	+				+0.4
1,041,894	+				-0.3
1,041,895	-				-2.6
1,041,895	-				+0.2
1,041,895	-				+0.4
1,041,895	-				+0.2
1,041,895	-				+0.7
1,041,895	-				+1.0
1,041,895	-				+1.2
1,041,908	+				-0.4
1,041,911	+				+1.1
1,041,911	+				+0.1
1,041,911	+				+1.0
1,041,919	+				-1.7
1,041,919	+				-0.3
1,041,920	-				+0.9
1,041,920	-				-0.6
1,041,935	+				+0.7
1,041,936	-				+0.9
1,041,938	-				-0.5
1,041,938	-				+2.2
1,041,957	+				-0.3
1,041,957	+				+0.7
1,041,958	-				-1.8
1,041,958	-				-0.1
1,042,061	+				-2.2
1,042,072	-				+1.0
1,042,128	+				+0.3
1,042,128	+				-2.8
1,042,129	-				-0.4
1,042,129	-				-1.8
1,042,129	-				+0.3
1,042,129	-				-2.3
1,042,151	+				+0.7
1,043,473	-				+0.7
1,043,473	-				-0.3
1,043,489	+				+1.8
1,043,490	-				-0.6
1,043,490	-				-0.3
1,043,558	+				-1.1
1,043,569	+				+0.2
1,043,570	-				+1.2
1,043,570	-				+0.5
1,043,591	-				+0.3
1,043,591	-				+0.4
1,043,591	-				-0.0
1,043,603	-				-2.3
1,043,639	+				-0.1
1,043,639	+				+0.5
1,043,639	+				-2.0
1,043,639	+				-1.6
1,043,648	+				+1.1
1,043,648	+				-0.4
1,043,649	-				+0.9
1,043,649	-				+1.1
1,043,649	-				-0.6
1,043,660	+				+0.6
1,043,669	+				-1.1
1,043,669	+				+1.0
1,043,669	+				-0.4
1,043,669	+				+0.3
1,043,669	+				+0.0
1,043,669	+				-0.8
1,043,669	+				-1.4
1,043,669	+				+0.1
1,043,669	+				+0.4
1,043,670	-				-0.7
1,043,670	-				-0.6
1,043,670	-				-2.1
1,043,670	-				+0.5
1,043,670	-				-1.4
1,043,893	+		IAI47_04965	0.25	-1.7
1,043,894	-		IAI47_04965	0.25	-1.8
1,043,894	-		IAI47_04965	0.25	+0.7
1,043,911	+		IAI47_04965	0.27	-0.1
1,043,912	-		IAI47_04965	0.27	-1.1
1,043,987	+		IAI47_04965	0.33	-0.4
1,043,987	+		IAI47_04965	0.33	+0.4
1,043,988	-		IAI47_04965	0.34	+0.8
1,044,109	+		IAI47_04965	0.44	-0.1
1,044,110	-		IAI47_04965	0.44	-0.8
1,044,110	-		IAI47_04965	0.44	+0.1
1,044,272	+		IAI47_04965	0.58	+1.1
1,044,272	+		IAI47_04965	0.58	+0.3
1,044,272	+		IAI47_04965	0.58	+0.4
1,044,273	-		IAI47_04965	0.58	-0.5
1,044,273	-		IAI47_04965	0.58	-0.1
1,044,275	+		IAI47_04965	0.58	+0.2
1,044,275	+		IAI47_04965	0.58	+1.5
1,044,276	-		IAI47_04965	0.59	+0.7
1,044,276	-		IAI47_04965	0.59	+0.4
1,044,276	-		IAI47_04965	0.59	-0.1
1,044,276	-		IAI47_04965	0.59	-1.1
1,044,289	+		IAI47_04965	0.60	-0.4
1,044,289	+		IAI47_04965	0.60	+1.3
1,044,289	+		IAI47_04965	0.60	+0.7
1,044,290	-		IAI47_04965	0.60	-0.3
1,044,312	-		IAI47_04965	0.62	-0.1
1,044,332	+		IAI47_04965	0.63	+0.1
1,044,332	+		IAI47_04965	0.63	+1.2
1,044,333	-		IAI47_04965	0.64	-1.2
1,044,333	-		IAI47_04965	0.64	+2.0
1,044,333	-		IAI47_04965	0.64	-0.8
1,044,333	-		IAI47_04965	0.64	+0.2
1,044,333	-		IAI47_04965	0.64	+1.3