Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04095 and IAI47_04100 are separated by 19 nucleotides IAI47_04100 and IAI47_04105 are separated by 74 nucleotides IAI47_04105 and IAI47_04110 are separated by 188 nucleotides
IAI47_04095: IAI47_04095 - 2-dehydro-3-deoxyglucarate aldolase, at 856,687 to 857,457
_04095
IAI47_04100: IAI47_04100 - 2-hydroxy-3-oxopropionate reductase, at 857,477 to 858,361
_04100
IAI47_04105: IAI47_04105 - glycerate kinase, at 858,436 to 859,575
_04105
IAI47_04110: IAI47_04110 - two-component sensor histidine kinase BarA, at 859,764 to 862,493
_04110
Position (kb) 858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 857.449 kb on - strand at 857.449 kb on - strand at 857.449 kb on - strand at 857.463 kb on + strand at 857.464 kb on - strand at 857.491 kb on + strand at 857.556 kb on + strand at 857.557 kb on - strand at 857.557 kb on - strand at 857.596 kb on + strand, within IAI47_04100 at 857.597 kb on - strand, within IAI47_04100 at 857.659 kb on + strand, within IAI47_04100 at 857.659 kb on + strand, within IAI47_04100 at 857.659 kb on + strand, within IAI47_04100 at 857.659 kb on + strand, within IAI47_04100 at 857.660 kb on - strand, within IAI47_04100 at 857.660 kb on - strand, within IAI47_04100 at 857.660 kb on - strand, within IAI47_04100 at 857.660 kb on - strand, within IAI47_04100 at 857.717 kb on - strand, within IAI47_04100 at 857.787 kb on + strand, within IAI47_04100 at 857.788 kb on - strand, within IAI47_04100 at 857.893 kb on + strand, within IAI47_04100 at 857.894 kb on - strand, within IAI47_04100 at 857.915 kb on + strand, within IAI47_04100 at 857.915 kb on + strand, within IAI47_04100 at 857.915 kb on + strand, within IAI47_04100 at 857.915 kb on + strand, within IAI47_04100 at 857.915 kb on + strand, within IAI47_04100 at 857.916 kb on - strand, within IAI47_04100 at 857.916 kb on - strand, within IAI47_04100 at 857.954 kb on - strand, within IAI47_04100 at 857.983 kb on + strand, within IAI47_04100 at 857.983 kb on + strand, within IAI47_04100 at 857.984 kb on - strand, within IAI47_04100 at 857.984 kb on - strand, within IAI47_04100 at 858.081 kb on - strand, within IAI47_04100 at 858.211 kb on + strand, within IAI47_04100 at 858.211 kb on + strand, within IAI47_04100 at 858.212 kb on - strand, within IAI47_04100 at 858.212 kb on - strand, within IAI47_04100 at 858.323 kb on + strand at 858.323 kb on + strand at 858.323 kb on + strand at 858.324 kb on - strand at 858.324 kb on - strand at 858.324 kb on - strand at 858.326 kb on + strand at 858.326 kb on + strand at 858.326 kb on + strand at 858.326 kb on + strand at 858.327 kb on - strand at 858.327 kb on - strand at 858.337 kb on - strand at 858.337 kb on - strand at 858.359 kb on + strand at 858.463 kb on + strand at 858.463 kb on + strand at 858.463 kb on + strand at 858.463 kb on + strand at 858.463 kb on + strand at 858.464 kb on - strand at 858.464 kb on - strand at 858.465 kb on + strand at 858.465 kb on + strand at 858.466 kb on - strand at 858.466 kb on - strand at 858.466 kb on - strand at 858.466 kb on - strand at 858.476 kb on + strand at 858.541 kb on + strand at 858.541 kb on + strand at 858.541 kb on + strand at 858.541 kb on + strand at 858.542 kb on - strand at 858.542 kb on - strand at 858.542 kb on - strand at 858.542 kb on - strand at 858.581 kb on + strand, within IAI47_04105 at 858.581 kb on + strand, within IAI47_04105 at 858.581 kb on + strand, within IAI47_04105 at 858.581 kb on + strand, within IAI47_04105 at 858.582 kb on - strand, within IAI47_04105 at 858.582 kb on - strand, within IAI47_04105 at 858.664 kb on + strand, within IAI47_04105 at 858.664 kb on + strand, within IAI47_04105 at 858.665 kb on - strand, within IAI47_04105 at 858.665 kb on - strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.694 kb on + strand, within IAI47_04105 at 858.695 kb on - strand, within IAI47_04105 at 858.695 kb on - strand, within IAI47_04105 at 858.695 kb on - strand, within IAI47_04105 at 858.696 kb on + strand, within IAI47_04105 at 858.758 kb on + strand, within IAI47_04105 at 858.819 kb on + strand, within IAI47_04105 at 858.820 kb on - strand, within IAI47_04105 at 858.820 kb on - strand, within IAI47_04105 at 858.832 kb on - strand, within IAI47_04105 at 858.960 kb on + strand, within IAI47_04105 at 858.961 kb on - strand, within IAI47_04105 at 858.961 kb on - strand, within IAI47_04105 at 859.021 kb on - strand, within IAI47_04105 at 859.121 kb on - strand, within IAI47_04105 at 859.121 kb on - strand, within IAI47_04105 at 859.121 kb on - strand, within IAI47_04105 at 859.121 kb on - strand, within IAI47_04105 at 859.131 kb on + strand, within IAI47_04105 at 859.132 kb on - strand, within IAI47_04105 at 859.149 kb on + strand, within IAI47_04105 at 859.150 kb on - strand, within IAI47_04105 at 859.303 kb on - strand, within IAI47_04105 at 859.332 kb on + strand, within IAI47_04105 at 859.332 kb on + strand, within IAI47_04105 at 859.332 kb on + strand, within IAI47_04105 at 859.332 kb on + strand, within IAI47_04105 at 859.333 kb on - strand, within IAI47_04105 at 859.333 kb on - strand, within IAI47_04105 at 859.333 kb on - strand, within IAI47_04105 at 859.333 kb on - strand, within IAI47_04105 at 859.333 kb on - strand, within IAI47_04105 at 859.335 kb on + strand, within IAI47_04105 at 859.335 kb on + strand, within IAI47_04105 at 859.336 kb on - strand, within IAI47_04105 at 859.381 kb on - strand, within IAI47_04105 at 859.381 kb on - strand, within IAI47_04105 at 859.398 kb on + strand, within IAI47_04105 at 859.399 kb on - strand, within IAI47_04105 at 859.399 kb on - strand, within IAI47_04105 at 859.399 kb on - strand, within IAI47_04105 at 859.471 kb on + strand at 859.471 kb on + strand at 859.471 kb on + strand at 859.471 kb on + strand at 859.471 kb on + strand at 859.471 kb on + strand at 859.472 kb on - strand at 859.472 kb on - strand at 859.472 kb on - strand at 859.536 kb on + strand at 859.536 kb on + strand at 859.537 kb on - strand at 859.537 kb on - strand at 859.537 kb on - strand at 859.537 kb on - strand at 859.537 kb on - strand at 859.537 kb on - strand at 859.594 kb on + strand at 859.594 kb on + strand at 859.595 kb on - strand at 859.595 kb on - strand at 859.595 kb on - strand at 859.595 kb on - strand at 859.595 kb on - strand at 859.597 kb on + strand at 859.597 kb on + strand at 859.598 kb on - strand at 859.598 kb on - strand at 859.634 kb on - strand at 859.647 kb on + strand at 859.664 kb on + strand at 859.664 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.697 kb on + strand at 859.698 kb on - strand at 859.698 kb on - strand at 859.698 kb on - strand at 859.702 kb on + strand at 859.703 kb on - strand at 859.776 kb on + strand at 859.776 kb on + strand at 859.921 kb on + strand at 859.922 kb on - strand at 859.949 kb on + strand at 859.949 kb on + strand at 860.016 kb on + strand at 860.063 kb on + strand, within IAI47_04110 at 860.063 kb on + strand, within IAI47_04110 at 860.106 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.109 kb on + strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.110 kb on - strand, within IAI47_04110 at 860.150 kb on + strand, within IAI47_04110 at 860.150 kb on + strand, within IAI47_04110 at 860.150 kb on + strand, within IAI47_04110 at 860.151 kb on - strand, within IAI47_04110 at 860.152 kb on + strand, within IAI47_04110 at 860.152 kb on + strand, within IAI47_04110 at 860.152 kb on + strand, within IAI47_04110 at 860.152 kb on + strand, within IAI47_04110 at 860.153 kb on - strand, within IAI47_04110 at 860.173 kb on - strand, within IAI47_04110 at 860.173 kb on - strand, within IAI47_04110 at 860.203 kb on + strand, within IAI47_04110 at 860.203 kb on + strand, within IAI47_04110 at 860.203 kb on + strand, within IAI47_04110 at 860.203 kb on + strand, within IAI47_04110 at 860.204 kb on - strand, within IAI47_04110 at 860.204 kb on - strand, within IAI47_04110 at 860.204 kb on - strand, within IAI47_04110 at 860.306 kb on + strand, within IAI47_04110 at 860.348 kb on + strand, within IAI47_04110 at 860.348 kb on + strand, within IAI47_04110 at 860.348 kb on + strand, within IAI47_04110 at 860.348 kb on + strand, within IAI47_04110 at 860.393 kb on + strand, within IAI47_04110 at 860.394 kb on - strand, within IAI47_04110 at 860.462 kb on + strand, within IAI47_04110 at 860.463 kb on - strand, within IAI47_04110 at 860.463 kb on - strand, within IAI47_04110 at 860.463 kb on - strand, within IAI47_04110 at 860.463 kb on - strand, within IAI47_04110 at 860.477 kb on + strand, within IAI47_04110 at 860.478 kb on - strand, within IAI47_04110 at 860.478 kb on - strand, within IAI47_04110 at 860.478 kb on - strand, within IAI47_04110 at 860.478 kb on - strand, within IAI47_04110 at 860.557 kb on - strand, within IAI47_04110
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 857,449 - +0.4 857,449 - +0.9 857,449 - +0.8 857,463 + +0.3 857,464 - +0.8 857,491 + +1.4 857,556 + -1.0 857,557 - -1.6 857,557 - -0.0 857,596 + IAI47_04100 0.13 -0.8 857,597 - IAI47_04100 0.14 +0.3 857,659 + IAI47_04100 0.21 +0.2 857,659 + IAI47_04100 0.21 -0.5 857,659 + IAI47_04100 0.21 -0.1 857,659 + IAI47_04100 0.21 +0.6 857,660 - IAI47_04100 0.21 +0.3 857,660 - IAI47_04100 0.21 +1.2 857,660 - IAI47_04100 0.21 +0.0 857,660 - IAI47_04100 0.21 -0.5 857,717 - IAI47_04100 0.27 -0.1 857,787 + IAI47_04100 0.35 +1.2 857,788 - IAI47_04100 0.35 +0.0 857,893 + IAI47_04100 0.47 +0.6 857,894 - IAI47_04100 0.47 -0.2 857,915 + IAI47_04100 0.49 +0.1 857,915 + IAI47_04100 0.49 +0.3 857,915 + IAI47_04100 0.49 +0.4 857,915 + IAI47_04100 0.49 +0.4 857,915 + IAI47_04100 0.49 -0.9 857,916 - IAI47_04100 0.50 +1.1 857,916 - IAI47_04100 0.50 -1.6 857,954 - IAI47_04100 0.54 +0.5 857,983 + IAI47_04100 0.57 +0.8 857,983 + IAI47_04100 0.57 -0.7 857,984 - IAI47_04100 0.57 -0.6 857,984 - IAI47_04100 0.57 -1.2 858,081 - IAI47_04100 0.68 -0.4 858,211 + IAI47_04100 0.83 -0.5 858,211 + IAI47_04100 0.83 +0.2 858,212 - IAI47_04100 0.83 +0.3 858,212 - IAI47_04100 0.83 -2.0 858,323 + +1.4 858,323 + +1.5 858,323 + +0.4 858,324 - +0.1 858,324 - -1.8 858,324 - -0.1 858,326 + +0.2 858,326 + +0.4 858,326 + +0.2 858,326 + -0.3 858,327 - +0.6 858,327 - -0.7 858,337 - +0.0 858,337 - -0.1 858,359 + -0.1 858,463 + +2.8 858,463 + -0.2 858,463 + -0.2 858,463 + -0.2 858,463 + -0.6 858,464 - +0.8 858,464 - -0.8 858,465 + -0.6 858,465 + -0.2 858,466 - -0.2 858,466 - -0.5 858,466 - -1.1 858,466 - -0.7 858,476 + -1.6 858,541 + -1.6 858,541 + -1.7 858,541 + -0.8 858,541 + -0.8 858,542 - -1.2 858,542 - +0.0 858,542 - -0.8 858,542 - -2.0 858,581 + IAI47_04105 0.13 -1.6 858,581 + IAI47_04105 0.13 -1.8 858,581 + IAI47_04105 0.13 -0.6 858,581 + IAI47_04105 0.13 -0.2 858,582 - IAI47_04105 0.13 -1.5 858,582 - IAI47_04105 0.13 +2.2 858,664 + IAI47_04105 0.20 +0.4 858,664 + IAI47_04105 0.20 -0.0 858,665 - IAI47_04105 0.20 -0.8 858,665 - IAI47_04105 0.20 -0.5 858,694 + IAI47_04105 0.23 +0.2 858,694 + IAI47_04105 0.23 -0.8 858,694 + IAI47_04105 0.23 +0.8 858,694 + IAI47_04105 0.23 -1.0 858,694 + IAI47_04105 0.23 -2.2 858,694 + IAI47_04105 0.23 +0.0 858,694 + IAI47_04105 0.23 +0.8 858,695 - IAI47_04105 0.23 -0.5 858,695 - IAI47_04105 0.23 -1.3 858,695 - IAI47_04105 0.23 -0.1 858,696 + IAI47_04105 0.23 -1.2 858,758 + IAI47_04105 0.28 -0.8 858,819 + IAI47_04105 0.34 -0.2 858,820 - IAI47_04105 0.34 -1.1 858,820 - IAI47_04105 0.34 -0.1 858,832 - IAI47_04105 0.35 -1.2 858,960 + IAI47_04105 0.46 +0.2 858,961 - IAI47_04105 0.46 +1.4 858,961 - IAI47_04105 0.46 +0.5 859,021 - IAI47_04105 0.51 -0.3 859,121 - IAI47_04105 0.60 -0.6 859,121 - IAI47_04105 0.60 -0.3 859,121 - IAI47_04105 0.60 -0.7 859,121 - IAI47_04105 0.60 -2.4 859,131 + IAI47_04105 0.61 +0.2 859,132 - IAI47_04105 0.61 -0.1 859,149 + IAI47_04105 0.63 -1.0 859,150 - IAI47_04105 0.63 +0.4 859,303 - IAI47_04105 0.76 -0.5 859,332 + IAI47_04105 0.79 -1.5 859,332 + IAI47_04105 0.79 +0.2 859,332 + IAI47_04105 0.79 -0.5 859,332 + IAI47_04105 0.79 -1.0 859,333 - IAI47_04105 0.79 +0.2 859,333 - IAI47_04105 0.79 -0.2 859,333 - IAI47_04105 0.79 -0.8 859,333 - IAI47_04105 0.79 -0.8 859,333 - IAI47_04105 0.79 -1.2 859,335 + IAI47_04105 0.79 +3.9 859,335 + IAI47_04105 0.79 -1.3 859,336 - IAI47_04105 0.79 -1.2 859,381 - IAI47_04105 0.83 +1.5 859,381 - IAI47_04105 0.83 -1.2 859,398 + IAI47_04105 0.84 -2.4 859,399 - IAI47_04105 0.84 -2.2 859,399 - IAI47_04105 0.84 +0.6 859,399 - IAI47_04105 0.84 +0.3 859,471 + -1.0 859,471 + -2.6 859,471 + -0.5 859,471 + -1.8 859,471 + +0.8 859,471 + -0.8 859,472 - -0.6 859,472 - -0.6 859,472 - -1.2 859,536 + +0.8 859,536 + -0.6 859,537 - -0.2 859,537 - +0.1 859,537 - -0.9 859,537 - -0.4 859,537 - -2.1 859,537 - +0.8 859,594 + -0.6 859,594 + +0.8 859,595 - -0.6 859,595 - -0.2 859,595 - +0.5 859,595 - +1.2 859,595 - +0.8 859,597 + -0.2 859,597 + -0.2 859,598 - -0.4 859,598 - -0.2 859,634 - -0.0 859,647 + -1.2 859,664 + -0.6 859,664 + -0.4 859,697 + -0.1 859,697 + +1.6 859,697 + +0.8 859,697 + -0.0 859,697 + +0.8 859,697 + +0.0 859,697 + -1.6 859,697 + -1.5 859,698 - -1.2 859,698 - +0.5 859,698 - -0.1 859,702 + -0.1 859,703 - -0.7 859,776 + -1.7 859,776 + -1.7 859,921 + -0.2 859,922 - -1.2 859,949 + -0.8 859,949 + -1.7 860,016 + -2.6 860,063 + IAI47_04110 0.11 -1.7 860,063 + IAI47_04110 0.11 -3.0 860,106 + IAI47_04110 0.13 -1.1 860,109 + IAI47_04110 0.13 +0.8 860,109 + IAI47_04110 0.13 -3.1 860,109 + IAI47_04110 0.13 -3.1 860,109 + IAI47_04110 0.13 -2.2 860,109 + IAI47_04110 0.13 -2.2 860,109 + IAI47_04110 0.13 -1.3 860,109 + IAI47_04110 0.13 -1.8 860,110 - IAI47_04110 0.13 -1.2 860,110 - IAI47_04110 0.13 -2.6 860,110 - IAI47_04110 0.13 -2.0 860,110 - IAI47_04110 0.13 +0.8 860,110 - IAI47_04110 0.13 -1.0 860,110 - IAI47_04110 0.13 -1.2 860,110 - IAI47_04110 0.13 -1.0 860,150 + IAI47_04110 0.14 -0.6 860,150 + IAI47_04110 0.14 -2.3 860,150 + IAI47_04110 0.14 -3.5 860,151 - IAI47_04110 0.14 -1.2 860,152 + IAI47_04110 0.14 -0.8 860,152 + IAI47_04110 0.14 -0.8 860,152 + IAI47_04110 0.14 -0.9 860,152 + IAI47_04110 0.14 -1.7 860,153 - IAI47_04110 0.14 -0.8 860,173 - IAI47_04110 0.15 -0.9 860,173 - IAI47_04110 0.15 -1.6 860,203 + IAI47_04110 0.16 -2.0 860,203 + IAI47_04110 0.16 -1.2 860,203 + IAI47_04110 0.16 -1.8 860,203 + IAI47_04110 0.16 -2.4 860,204 - IAI47_04110 0.16 -2.7 860,204 - IAI47_04110 0.16 +0.2 860,204 - IAI47_04110 0.16 -1.1 860,306 + IAI47_04110 0.20 -1.8 860,348 + IAI47_04110 0.21 -2.2 860,348 + IAI47_04110 0.21 -1.2 860,348 + IAI47_04110 0.21 -2.7 860,348 + IAI47_04110 0.21 -2.9 860,393 + IAI47_04110 0.23 -2.6 860,394 - IAI47_04110 0.23 -2.1 860,462 + IAI47_04110 0.26 -2.6 860,463 - IAI47_04110 0.26 -1.3 860,463 - IAI47_04110 0.26 -1.9 860,463 - IAI47_04110 0.26 -1.0 860,463 - IAI47_04110 0.26 -2.7 860,477 + IAI47_04110 0.26 -0.8 860,478 - IAI47_04110 0.26 -2.8 860,478 - IAI47_04110 0.26 -2.7 860,478 - IAI47_04110 0.26 -1.9 860,478 - IAI47_04110 0.26 -1.6 860,557 - IAI47_04110 0.29 -1.1
Or see this region's nucleotide sequence