Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03690 and IAI47_03695 are separated by 105 nucleotides IAI47_03695 and IAI47_03700 are separated by 208 nucleotides
IAI47_03690: IAI47_03690 - phosphoglycerate kinase, at 770,269 to 771,432
_03690
IAI47_03695: IAI47_03695 - class II fructose-bisphosphate aldolase, at 771,538 to 772,617
_03695
IAI47_03700: IAI47_03700 - small-conductance mechanosensitive channel MscS, at 772,826 to 773,707
_03700
Position (kb) 771
772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 771.430 kb on + strand at 771.430 kb on + strand at 771.430 kb on + strand at 771.430 kb on + strand at 772.615 kb on + strand at 772.615 kb on + strand at 772.615 kb on + strand at 772.615 kb on + strand at 772.616 kb on - strand at 772.620 kb on + strand at 772.622 kb on + strand at 772.622 kb on + strand at 772.630 kb on + strand at 772.630 kb on + strand at 772.630 kb on + strand at 772.631 kb on - strand at 772.631 kb on - strand at 772.635 kb on + strand at 772.635 kb on + strand at 772.635 kb on + strand at 772.637 kb on + strand at 772.637 kb on + strand at 772.637 kb on + strand at 772.637 kb on + strand at 772.637 kb on + strand at 772.638 kb on - strand at 772.638 kb on - strand at 772.652 kb on - strand at 772.653 kb on + strand at 772.654 kb on - strand at 772.738 kb on + strand at 772.738 kb on + strand at 772.738 kb on + strand at 772.738 kb on + strand at 772.739 kb on - strand at 772.739 kb on - strand at 772.739 kb on - strand at 772.739 kb on - strand at 772.739 kb on - strand at 772.791 kb on + strand at 772.791 kb on + strand at 772.791 kb on + strand at 772.791 kb on + strand at 772.791 kb on + strand at 772.791 kb on + strand at 772.791 kb on + strand at 772.792 kb on - strand at 772.792 kb on - strand at 772.813 kb on - strand at 772.834 kb on + strand at 772.835 kb on - strand at 772.840 kb on + strand at 772.840 kb on + strand at 772.840 kb on + strand at 772.855 kb on + strand at 772.855 kb on + strand at 772.855 kb on + strand at 772.856 kb on - strand at 772.856 kb on - strand at 772.856 kb on - strand at 772.868 kb on - strand at 772.875 kb on + strand at 772.875 kb on + strand at 772.875 kb on + strand at 772.875 kb on + strand at 772.876 kb on - strand at 772.876 kb on - strand at 772.878 kb on + strand at 772.878 kb on + strand at 772.878 kb on + strand at 772.878 kb on + strand at 772.878 kb on + strand at 772.878 kb on + strand at 772.878 kb on + strand at 772.878 kb on + strand at 772.878 kb on + strand at 772.879 kb on - strand at 772.879 kb on - strand at 772.879 kb on - strand at 772.899 kb on + strand at 772.899 kb on + strand at 772.899 kb on + strand at 772.900 kb on - strand at 772.900 kb on - strand at 772.904 kb on + strand at 772.904 kb on + strand at 772.904 kb on + strand at 772.904 kb on + strand at 772.904 kb on + strand at 772.905 kb on - strand at 772.905 kb on - strand at 772.905 kb on - strand at 772.905 kb on - strand at 772.927 kb on + strand, within IAI47_03700 at 772.928 kb on - strand, within IAI47_03700 at 772.928 kb on - strand, within IAI47_03700 at 772.936 kb on + strand, within IAI47_03700 at 772.937 kb on - strand, within IAI47_03700 at 772.937 kb on - strand, within IAI47_03700 at 772.949 kb on - strand, within IAI47_03700 at 772.949 kb on - strand, within IAI47_03700 at 772.981 kb on + strand, within IAI47_03700 at 773.005 kb on + strand, within IAI47_03700 at 773.005 kb on + strand, within IAI47_03700 at 773.005 kb on + strand, within IAI47_03700 at 773.005 kb on + strand, within IAI47_03700 at 773.005 kb on + strand, within IAI47_03700 at 773.005 kb on + strand, within IAI47_03700 at 773.005 kb on + strand, within IAI47_03700 at 773.006 kb on - strand, within IAI47_03700 at 773.006 kb on - strand, within IAI47_03700 at 773.006 kb on - strand, within IAI47_03700 at 773.006 kb on - strand, within IAI47_03700 at 773.011 kb on + strand, within IAI47_03700 at 773.011 kb on + strand, within IAI47_03700 at 773.011 kb on + strand, within IAI47_03700 at 773.012 kb on - strand, within IAI47_03700 at 773.071 kb on + strand, within IAI47_03700 at 773.072 kb on - strand, within IAI47_03700 at 773.072 kb on - strand, within IAI47_03700 at 773.097 kb on + strand, within IAI47_03700 at 773.097 kb on + strand, within IAI47_03700 at 773.098 kb on - strand, within IAI47_03700 at 773.157 kb on + strand, within IAI47_03700 at 773.191 kb on - strand, within IAI47_03700 at 773.191 kb on - strand, within IAI47_03700 at 773.281 kb on + strand, within IAI47_03700 at 773.281 kb on + strand, within IAI47_03700 at 773.281 kb on + strand, within IAI47_03700 at 773.282 kb on - strand, within IAI47_03700 at 773.282 kb on - strand, within IAI47_03700 at 773.329 kb on + strand, within IAI47_03700 at 773.353 kb on + strand, within IAI47_03700 at 773.389 kb on + strand, within IAI47_03700 at 773.390 kb on - strand, within IAI47_03700 at 773.390 kb on - strand, within IAI47_03700 at 773.405 kb on + strand, within IAI47_03700 at 773.406 kb on - strand, within IAI47_03700 at 773.406 kb on - strand, within IAI47_03700 at 773.469 kb on + strand, within IAI47_03700 at 773.470 kb on - strand, within IAI47_03700 at 773.470 kb on - strand, within IAI47_03700 at 773.472 kb on + strand, within IAI47_03700 at 773.472 kb on + strand, within IAI47_03700 at 773.472 kb on + strand, within IAI47_03700 at 773.472 kb on + strand, within IAI47_03700 at 773.472 kb on + strand, within IAI47_03700 at 773.473 kb on - strand, within IAI47_03700 at 773.479 kb on + strand, within IAI47_03700 at 773.479 kb on + strand, within IAI47_03700 at 773.479 kb on + strand, within IAI47_03700 at 773.480 kb on - strand, within IAI47_03700 at 773.480 kb on - strand, within IAI47_03700 at 773.480 kb on - strand, within IAI47_03700 at 773.480 kb on - strand, within IAI47_03700 at 773.480 kb on - strand, within IAI47_03700 at 773.485 kb on + strand, within IAI47_03700 at 773.508 kb on + strand, within IAI47_03700 at 773.573 kb on + strand, within IAI47_03700 at 773.573 kb on + strand, within IAI47_03700 at 773.573 kb on + strand, within IAI47_03700 at 773.602 kb on + strand, within IAI47_03700 at 773.602 kb on + strand, within IAI47_03700 at 773.603 kb on - strand, within IAI47_03700 at 773.603 kb on - strand, within IAI47_03700 at 773.603 kb on - strand, within IAI47_03700 at 773.603 kb on - strand, within IAI47_03700 at 773.603 kb on - strand, within IAI47_03700
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 771,430 + -0.2 771,430 + -1.7 771,430 + -0.8 771,430 + -0.1 772,615 + +0.6 772,615 + +0.4 772,615 + -0.2 772,615 + +1.8 772,616 - +0.8 772,620 + -0.5 772,622 + +0.8 772,622 + -0.6 772,630 + -1.0 772,630 + -0.0 772,630 + +0.2 772,631 - -0.7 772,631 - -0.5 772,635 + -1.2 772,635 + +0.3 772,635 + -2.2 772,637 + -0.4 772,637 + +0.4 772,637 + -0.2 772,637 + -0.6 772,637 + +0.9 772,638 - +1.4 772,638 - -1.6 772,652 - -0.0 772,653 + -0.5 772,654 - +0.3 772,738 + +0.1 772,738 + -0.5 772,738 + +0.8 772,738 + -1.0 772,739 - -0.5 772,739 - -0.6 772,739 - +0.6 772,739 - -0.6 772,739 - -2.7 772,791 + +1.8 772,791 + +1.3 772,791 + +0.4 772,791 + -0.2 772,791 + -0.5 772,791 + -2.2 772,791 + +1.4 772,792 - +1.4 772,792 - -0.1 772,813 - +0.1 772,834 + -1.2 772,835 - -0.2 772,840 + -0.8 772,840 + +0.1 772,840 + +0.5 772,855 + -1.7 772,855 + +0.1 772,855 + +2.8 772,856 - -0.6 772,856 - +0.2 772,856 - -1.4 772,868 - -0.0 772,875 + -0.7 772,875 + +0.1 772,875 + +0.5 772,875 + +0.8 772,876 - -0.6 772,876 - +0.1 772,878 + -0.2 772,878 + +0.0 772,878 + +0.1 772,878 + +0.6 772,878 + -0.1 772,878 + -0.6 772,878 + -0.7 772,878 + +0.0 772,878 + -0.2 772,879 - -0.2 772,879 - -0.2 772,879 - +1.9 772,899 + +0.4 772,899 + -0.9 772,899 + +0.0 772,900 - +1.1 772,900 - +0.4 772,904 + -0.8 772,904 + +0.5 772,904 + -1.0 772,904 + -0.5 772,904 + -0.6 772,905 - -0.8 772,905 - -1.0 772,905 - +0.8 772,905 - +0.8 772,927 + IAI47_03700 0.11 -0.1 772,928 - IAI47_03700 0.12 -0.0 772,928 - IAI47_03700 0.12 -1.0 772,936 + IAI47_03700 0.12 +0.6 772,937 - IAI47_03700 0.13 -1.8 772,937 - IAI47_03700 0.13 -2.2 772,949 - IAI47_03700 0.14 -2.7 772,949 - IAI47_03700 0.14 -0.2 772,981 + IAI47_03700 0.18 -0.1 773,005 + IAI47_03700 0.20 -0.4 773,005 + IAI47_03700 0.20 +0.4 773,005 + IAI47_03700 0.20 -0.0 773,005 + IAI47_03700 0.20 -0.6 773,005 + IAI47_03700 0.20 -2.8 773,005 + IAI47_03700 0.20 -1.4 773,005 + IAI47_03700 0.20 -1.1 773,006 - IAI47_03700 0.20 +0.0 773,006 - IAI47_03700 0.20 +0.9 773,006 - IAI47_03700 0.20 +0.1 773,006 - IAI47_03700 0.20 +0.1 773,011 + IAI47_03700 0.21 -1.4 773,011 + IAI47_03700 0.21 +1.3 773,011 + IAI47_03700 0.21 +1.0 773,012 - IAI47_03700 0.21 -0.0 773,071 + IAI47_03700 0.28 -0.6 773,072 - IAI47_03700 0.28 +0.8 773,072 - IAI47_03700 0.28 -1.0 773,097 + IAI47_03700 0.31 +0.6 773,097 + IAI47_03700 0.31 -0.4 773,098 - IAI47_03700 0.31 -0.8 773,157 + IAI47_03700 0.38 +0.1 773,191 - IAI47_03700 0.41 -0.5 773,191 - IAI47_03700 0.41 +0.8 773,281 + IAI47_03700 0.52 +0.6 773,281 + IAI47_03700 0.52 +0.8 773,281 + IAI47_03700 0.52 +0.8 773,282 - IAI47_03700 0.52 -1.7 773,282 - IAI47_03700 0.52 +0.3 773,329 + IAI47_03700 0.57 -1.6 773,353 + IAI47_03700 0.60 -3.0 773,389 + IAI47_03700 0.64 -0.8 773,390 - IAI47_03700 0.64 -1.0 773,390 - IAI47_03700 0.64 +0.5 773,405 + IAI47_03700 0.66 -0.8 773,406 - IAI47_03700 0.66 -0.2 773,406 - IAI47_03700 0.66 +0.1 773,469 + IAI47_03700 0.73 +0.3 773,470 - IAI47_03700 0.73 +1.2 773,470 - IAI47_03700 0.73 +0.5 773,472 + IAI47_03700 0.73 +1.8 773,472 + IAI47_03700 0.73 +2.8 773,472 + IAI47_03700 0.73 -1.0 773,472 + IAI47_03700 0.73 +0.8 773,472 + IAI47_03700 0.73 +0.5 773,473 - IAI47_03700 0.73 -0.8 773,479 + IAI47_03700 0.74 +0.4 773,479 + IAI47_03700 0.74 -1.6 773,479 + IAI47_03700 0.74 -0.5 773,480 - IAI47_03700 0.74 +0.5 773,480 - IAI47_03700 0.74 +0.9 773,480 - IAI47_03700 0.74 -1.8 773,480 - IAI47_03700 0.74 -0.1 773,480 - IAI47_03700 0.74 -0.2 773,485 + IAI47_03700 0.75 -0.1 773,508 + IAI47_03700 0.77 -0.7 773,573 + IAI47_03700 0.85 -0.6 773,573 + IAI47_03700 0.85 +0.9 773,573 + IAI47_03700 0.85 +0.5 773,602 + IAI47_03700 0.88 +0.2 773,602 + IAI47_03700 0.88 -0.7 773,603 - IAI47_03700 0.88 +1.2 773,603 - IAI47_03700 0.88 -0.1 773,603 - IAI47_03700 0.88 +0.2 773,603 - IAI47_03700 0.88 +0.3 773,603 - IAI47_03700 0.88 +0.5
Or see this region's nucleotide sequence