Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03135 and IAI47_03140 are separated by 213 nucleotides IAI47_03140 and IAI47_03145 overlap by 4 nucleotides IAI47_03145 and IAI47_03150 are separated by 42 nucleotides IAI47_03150 and IAI47_03155 are separated by 3 nucleotides
IAI47_03135: IAI47_03135 - outer membrane channel protein TolC, at 649,420 to 650,886
_03135
IAI47_03140: IAI47_03140 - ADP-ribose diphosphatase, at 651,100 to 651,735
_03140
IAI47_03145: IAI47_03145 - DUF1249 family protein, at 651,732 to 652,157
_03145
IAI47_03150: IAI47_03150 - 3',5'-cyclic-AMP phosphodiesterase, at 652,200 to 653,027
_03150
IAI47_03155: IAI47_03155 - esterase YqiA, at 653,031 to 653,612
_03155
Position (kb) 651
652
653 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 650.854 kb on - strand at 650.854 kb on - strand at 650.854 kb on - strand at 650.934 kb on - strand at 650.979 kb on + strand at 650.979 kb on + strand at 650.979 kb on + strand at 650.980 kb on - strand at 650.980 kb on - strand at 650.980 kb on - strand at 650.980 kb on - strand at 650.980 kb on - strand at 650.980 kb on - strand at 651.001 kb on + strand at 651.001 kb on + strand at 651.001 kb on + strand at 651.001 kb on + strand at 651.002 kb on - strand at 651.002 kb on - strand at 651.002 kb on - strand at 651.002 kb on - strand at 651.002 kb on - strand at 651.007 kb on + strand at 651.008 kb on - strand at 651.008 kb on - strand at 651.012 kb on + strand at 651.012 kb on + strand at 651.012 kb on + strand at 651.013 kb on - strand at 651.013 kb on - strand at 651.013 kb on - strand at 651.013 kb on - strand at 651.017 kb on - strand at 651.017 kb on - strand at 651.021 kb on - strand at 651.021 kb on - strand at 651.035 kb on + strand at 651.035 kb on + strand at 651.035 kb on + strand at 651.035 kb on + strand at 651.035 kb on + strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.055 kb on - strand at 651.055 kb on - strand at 651.147 kb on - strand at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.222 kb on + strand, within IAI47_03140 at 651.223 kb on - strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.288 kb on - strand, within IAI47_03140 at 651.288 kb on - strand, within IAI47_03140 at 651.288 kb on - strand, within IAI47_03140 at 651.288 kb on - strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.303 kb on - strand, within IAI47_03140 at 651.346 kb on + strand, within IAI47_03140 at 651.346 kb on + strand, within IAI47_03140 at 651.347 kb on - strand, within IAI47_03140 at 651.394 kb on - strand, within IAI47_03140 at 651.471 kb on + strand, within IAI47_03140 at 651.472 kb on - strand, within IAI47_03140 at 651.472 kb on - strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.488 kb on - strand, within IAI47_03140 at 651.594 kb on + strand, within IAI47_03140 at 651.594 kb on + strand, within IAI47_03140 at 651.595 kb on - strand, within IAI47_03140 at 651.595 kb on - strand, within IAI47_03140 at 651.629 kb on - strand, within IAI47_03140 at 651.629 kb on - strand, within IAI47_03140 at 651.657 kb on + strand, within IAI47_03140 at 651.711 kb on - strand at 651.744 kb on + strand at 651.744 kb on + strand at 651.745 kb on - strand at 651.745 kb on - strand at 651.746 kb on + strand at 651.746 kb on + strand at 651.747 kb on - strand at 651.747 kb on - strand at 651.747 kb on - strand at 651.799 kb on + strand, within IAI47_03145 at 651.800 kb on - strand, within IAI47_03145 at 651.800 kb on - strand, within IAI47_03145 at 651.846 kb on + strand, within IAI47_03145 at 651.847 kb on - strand, within IAI47_03145 at 651.847 kb on - strand, within IAI47_03145 at 651.897 kb on + strand, within IAI47_03145 at 651.897 kb on + strand, within IAI47_03145 at 651.897 kb on + strand, within IAI47_03145 at 651.897 kb on + strand, within IAI47_03145 at 651.942 kb on + strand, within IAI47_03145 at 651.942 kb on + strand, within IAI47_03145 at 651.975 kb on + strand, within IAI47_03145 at 652.020 kb on + strand, within IAI47_03145 at 652.021 kb on - strand, within IAI47_03145 at 652.021 kb on - strand, within IAI47_03145 at 652.021 kb on - strand, within IAI47_03145 at 652.038 kb on + strand, within IAI47_03145 at 652.038 kb on + strand, within IAI47_03145 at 652.038 kb on + strand, within IAI47_03145 at 652.038 kb on + strand, within IAI47_03145 at 652.039 kb on - strand, within IAI47_03145 at 652.044 kb on + strand, within IAI47_03145 at 652.044 kb on + strand, within IAI47_03145 at 652.045 kb on - strand, within IAI47_03145 at 652.050 kb on - strand, within IAI47_03145 at 652.087 kb on + strand, within IAI47_03145 at 652.087 kb on + strand, within IAI47_03145 at 652.087 kb on + strand, within IAI47_03145 at 652.087 kb on + strand, within IAI47_03145 at 652.088 kb on - strand, within IAI47_03145 at 652.116 kb on + strand at 652.162 kb on + strand at 652.162 kb on + strand at 652.162 kb on + strand at 652.162 kb on + strand at 652.162 kb on + strand at 652.163 kb on - strand at 652.163 kb on - strand at 652.163 kb on - strand at 652.163 kb on - strand at 652.163 kb on - strand at 652.163 kb on - strand at 652.164 kb on + strand at 652.164 kb on + strand at 652.164 kb on + strand at 652.165 kb on - strand at 652.165 kb on - strand at 652.165 kb on - strand at 652.165 kb on - strand at 652.165 kb on - strand at 652.172 kb on + strand at 652.214 kb on - strand at 652.324 kb on - strand, within IAI47_03150 at 652.324 kb on - strand, within IAI47_03150 at 652.324 kb on - strand, within IAI47_03150 at 652.346 kb on + strand, within IAI47_03150 at 652.365 kb on + strand, within IAI47_03150 at 652.365 kb on + strand, within IAI47_03150 at 652.365 kb on + strand, within IAI47_03150 at 652.365 kb on + strand, within IAI47_03150 at 652.366 kb on - strand, within IAI47_03150 at 652.366 kb on - strand, within IAI47_03150 at 652.409 kb on + strand, within IAI47_03150 at 652.410 kb on - strand, within IAI47_03150 at 652.419 kb on + strand, within IAI47_03150 at 652.419 kb on + strand, within IAI47_03150 at 652.419 kb on + strand, within IAI47_03150 at 652.420 kb on - strand, within IAI47_03150 at 652.420 kb on - strand, within IAI47_03150 at 652.508 kb on + strand, within IAI47_03150 at 652.508 kb on + strand, within IAI47_03150 at 652.509 kb on - strand, within IAI47_03150 at 652.509 kb on - strand, within IAI47_03150 at 652.509 kb on - strand, within IAI47_03150 at 652.509 kb on - strand, within IAI47_03150 at 652.509 kb on - strand, within IAI47_03150 at 652.509 kb on - strand, within IAI47_03150 at 652.509 kb on - strand, within IAI47_03150 at 652.509 kb on - strand, within IAI47_03150 at 652.538 kb on + strand, within IAI47_03150 at 652.538 kb on + strand, within IAI47_03150 at 652.538 kb on + strand, within IAI47_03150 at 652.538 kb on + strand, within IAI47_03150 at 652.593 kb on + strand, within IAI47_03150 at 652.593 kb on + strand, within IAI47_03150 at 652.594 kb on - strand, within IAI47_03150 at 652.594 kb on - strand, within IAI47_03150 at 652.594 kb on - strand, within IAI47_03150 at 652.623 kb on + strand, within IAI47_03150 at 652.673 kb on + strand, within IAI47_03150 at 652.673 kb on + strand, within IAI47_03150 at 652.673 kb on + strand, within IAI47_03150 at 652.673 kb on + strand, within IAI47_03150 at 652.673 kb on + strand, within IAI47_03150 at 652.673 kb on + strand, within IAI47_03150 at 652.674 kb on - strand, within IAI47_03150 at 652.674 kb on - strand, within IAI47_03150 at 652.674 kb on - strand, within IAI47_03150 at 652.674 kb on - strand, within IAI47_03150 at 652.674 kb on - strand, within IAI47_03150 at 652.682 kb on + strand, within IAI47_03150 at 652.682 kb on + strand, within IAI47_03150 at 652.768 kb on + strand, within IAI47_03150 at 652.768 kb on + strand, within IAI47_03150 at 652.769 kb on - strand, within IAI47_03150 at 652.769 kb on - strand, within IAI47_03150 at 652.808 kb on + strand, within IAI47_03150 at 652.808 kb on + strand, within IAI47_03150 at 652.808 kb on + strand, within IAI47_03150 at 652.808 kb on + strand, within IAI47_03150 at 652.826 kb on + strand, within IAI47_03150 at 652.865 kb on + strand, within IAI47_03150 at 652.865 kb on + strand, within IAI47_03150 at 652.865 kb on + strand, within IAI47_03150 at 652.866 kb on - strand, within IAI47_03150 at 652.866 kb on - strand, within IAI47_03150 at 652.866 kb on - strand, within IAI47_03150 at 652.866 kb on - strand, within IAI47_03150 at 652.866 kb on - strand, within IAI47_03150 at 652.892 kb on + strand, within IAI47_03150 at 652.892 kb on + strand, within IAI47_03150 at 652.892 kb on + strand, within IAI47_03150 at 652.892 kb on + strand, within IAI47_03150 at 652.893 kb on - strand, within IAI47_03150 at 652.937 kb on + strand, within IAI47_03150 at 652.937 kb on + strand, within IAI47_03150 at 652.937 kb on + strand, within IAI47_03150 at 652.938 kb on - strand, within IAI47_03150 at 652.938 kb on - strand, within IAI47_03150 at 653.008 kb on + strand at 653.022 kb on + strand at 653.046 kb on + strand at 653.046 kb on + strand at 653.047 kb on - strand at 653.047 kb on - strand at 653.047 kb on - strand at 653.047 kb on - strand at 653.047 kb on - strand at 653.060 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 650,854 - +1.5 650,854 - -1.2 650,854 - +0.8 650,934 - +0.5 650,979 + -0.2 650,979 + -0.4 650,979 + +0.9 650,980 - +0.5 650,980 - +2.8 650,980 - -0.9 650,980 - -1.2 650,980 - +0.8 650,980 - -0.0 651,001 + -0.5 651,001 + -1.1 651,001 + -0.1 651,001 + -0.8 651,002 - -0.5 651,002 - +1.2 651,002 - +0.0 651,002 - +0.4 651,002 - +0.2 651,007 + -2.4 651,008 - -0.6 651,008 - -0.2 651,012 + +0.3 651,012 + -0.4 651,012 + +0.0 651,013 - +0.3 651,013 - +0.4 651,013 - +0.6 651,013 - -1.6 651,017 - +0.0 651,017 - -2.4 651,021 - +0.1 651,021 - -0.5 651,035 + -0.9 651,035 + -0.2 651,035 + -0.2 651,035 + +0.2 651,035 + -0.2 651,036 - -0.8 651,036 - -0.1 651,036 - +2.6 651,036 - -1.0 651,036 - +0.4 651,036 - -1.2 651,039 + +1.4 651,039 + -1.0 651,039 + -2.4 651,039 + -1.4 651,039 + +0.3 651,039 + -0.8 651,040 - +0.1 651,040 - -2.4 651,040 - +0.8 651,040 - -0.2 651,040 - +1.1 651,040 - +0.3 651,040 - +1.0 651,040 - -1.0 651,055 - +1.8 651,055 - +1.0 651,147 - +1.6 651,173 - IAI47_03140 0.11 -1.0 651,173 - IAI47_03140 0.11 -1.4 651,173 - IAI47_03140 0.11 +0.3 651,173 - IAI47_03140 0.11 -1.5 651,173 - IAI47_03140 0.11 +0.9 651,173 - IAI47_03140 0.11 +0.1 651,173 - IAI47_03140 0.11 +0.8 651,222 + IAI47_03140 0.19 +0.4 651,223 - IAI47_03140 0.19 +0.2 651,287 + IAI47_03140 0.29 +0.2 651,287 + IAI47_03140 0.29 +0.3 651,287 + IAI47_03140 0.29 -2.2 651,287 + IAI47_03140 0.29 +0.8 651,287 + IAI47_03140 0.29 +1.4 651,288 - IAI47_03140 0.30 -0.0 651,288 - IAI47_03140 0.30 -0.2 651,288 - IAI47_03140 0.30 -0.3 651,288 - IAI47_03140 0.30 +1.0 651,292 + IAI47_03140 0.30 -0.6 651,292 + IAI47_03140 0.30 -0.0 651,292 + IAI47_03140 0.30 -0.7 651,292 + IAI47_03140 0.30 -0.1 651,292 + IAI47_03140 0.30 -0.1 651,292 + IAI47_03140 0.30 -0.6 651,292 + IAI47_03140 0.30 +0.5 651,292 + IAI47_03140 0.30 +0.4 651,292 + IAI47_03140 0.30 +0.2 651,292 + IAI47_03140 0.30 +0.8 651,292 + IAI47_03140 0.30 +0.3 651,292 + IAI47_03140 0.30 -0.5 651,292 + IAI47_03140 0.30 +0.9 651,292 + IAI47_03140 0.30 +0.2 651,293 - IAI47_03140 0.30 -0.8 651,293 - IAI47_03140 0.30 -0.5 651,293 - IAI47_03140 0.30 +0.1 651,293 - IAI47_03140 0.30 -1.7 651,293 - IAI47_03140 0.30 -0.1 651,293 - IAI47_03140 0.30 +0.5 651,293 - IAI47_03140 0.30 +0.3 651,293 - IAI47_03140 0.30 +1.8 651,293 - IAI47_03140 0.30 -2.4 651,293 - IAI47_03140 0.30 +0.3 651,293 - IAI47_03140 0.30 +1.6 651,293 - IAI47_03140 0.30 -0.2 651,293 - IAI47_03140 0.30 +0.8 651,303 - IAI47_03140 0.32 -0.5 651,346 + IAI47_03140 0.39 -1.6 651,346 + IAI47_03140 0.39 -1.2 651,347 - IAI47_03140 0.39 -0.1 651,394 - IAI47_03140 0.46 +0.1 651,471 + IAI47_03140 0.58 +1.2 651,472 - IAI47_03140 0.58 -0.4 651,472 - IAI47_03140 0.58 -0.3 651,483 + IAI47_03140 0.60 -0.2 651,483 + IAI47_03140 0.60 +0.5 651,483 + IAI47_03140 0.60 -1.4 651,483 + IAI47_03140 0.60 +0.2 651,483 + IAI47_03140 0.60 -0.1 651,483 + IAI47_03140 0.60 -1.9 651,483 + IAI47_03140 0.60 +0.2 651,483 + IAI47_03140 0.60 -0.2 651,483 + IAI47_03140 0.60 -0.2 651,483 + IAI47_03140 0.60 +0.3 651,483 + IAI47_03140 0.60 -0.0 651,483 + IAI47_03140 0.60 -0.2 651,483 + IAI47_03140 0.60 -1.6 651,483 + IAI47_03140 0.60 -1.8 651,483 + IAI47_03140 0.60 -0.6 651,483 + IAI47_03140 0.60 +0.0 651,483 + IAI47_03140 0.60 -0.3 651,483 + IAI47_03140 0.60 +0.1 651,483 + IAI47_03140 0.60 +0.1 651,483 + IAI47_03140 0.60 -0.1 651,484 - IAI47_03140 0.60 -0.2 651,484 - IAI47_03140 0.60 -1.5 651,484 - IAI47_03140 0.60 -0.3 651,484 - IAI47_03140 0.60 -0.5 651,484 - IAI47_03140 0.60 -0.5 651,484 - IAI47_03140 0.60 +3.1 651,484 - IAI47_03140 0.60 +0.0 651,484 - IAI47_03140 0.60 -0.5 651,484 - IAI47_03140 0.60 -0.1 651,484 - IAI47_03140 0.60 -2.0 651,484 - IAI47_03140 0.60 +0.9 651,484 - IAI47_03140 0.60 +0.8 651,484 - IAI47_03140 0.60 -0.2 651,484 - IAI47_03140 0.60 +0.8 651,484 - IAI47_03140 0.60 +0.1 651,484 - IAI47_03140 0.60 +1.6 651,484 - IAI47_03140 0.60 +0.3 651,484 - IAI47_03140 0.60 +0.9 651,484 - IAI47_03140 0.60 +0.3 651,484 - IAI47_03140 0.60 -0.4 651,484 - IAI47_03140 0.60 +1.6 651,487 + IAI47_03140 0.61 +0.3 651,487 + IAI47_03140 0.61 +1.1 651,487 + IAI47_03140 0.61 -0.8 651,487 + IAI47_03140 0.61 +0.0 651,487 + IAI47_03140 0.61 -0.7 651,487 + IAI47_03140 0.61 +0.7 651,487 + IAI47_03140 0.61 -0.0 651,488 - IAI47_03140 0.61 +0.1 651,594 + IAI47_03140 0.78 +0.1 651,594 + IAI47_03140 0.78 -0.6 651,595 - IAI47_03140 0.78 -0.7 651,595 - 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Or see this region's nucleotide sequence