Strain Fitness in Pantoea sp. MT58 around IAI47_17225

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
3,651,122	+		IAI47_17220	0.85	-3.2
3,651,122	+		IAI47_17220	0.85	-3.4
3,651,122	+		IAI47_17220	0.85	-2.6
3,651,131	+		IAI47_17220	0.85	-3.6
3,651,132	-		IAI47_17220	0.85	-2.7
3,651,320	+		IAI47_17220	0.89	-2.1
3,651,320	+		IAI47_17220	0.89	-1.6
3,651,320	+		IAI47_17220	0.89	-3.1
3,651,320	+		IAI47_17220	0.89	-3.4
3,651,320	+		IAI47_17220	0.89	-0.8
3,651,321	-		IAI47_17220	0.89	-4.1
3,651,321	-		IAI47_17220	0.89	-3.4
3,651,321	-		IAI47_17220	0.89	-0.8
3,651,386	-				-2.9
3,651,405	+				-4.4
3,651,405	+				-5.0
3,651,405	+				-2.2
3,651,405	+				-5.2
3,651,406	-				-1.2
3,651,406	-				-2.8
3,651,406	-				-4.6
3,651,443	-				-4.5
3,651,464	-				-2.6
3,651,486	+				-1.6
3,651,487	-				-4.4
3,651,494	+				-3.3
3,651,494	+				-1.2
3,651,494	+				-2.4
3,651,539	+				-2.9
3,651,539	+				-3.2
3,651,539	+				-2.4
3,651,539	+				-0.8
3,651,540	-				-1.6
3,651,540	-				-2.8
3,651,540	-				-3.3
3,651,540	-				-0.8
3,651,540	-				-2.6
3,651,540	-				-2.1
3,651,631	+				-1.6
3,651,631	+				-2.2
3,651,632	-				-3.7
3,651,632	-				-1.2
3,651,632	-				-1.2
3,651,632	-				-5.2
3,651,668	-				-1.7
3,651,668	-				-4.2
3,651,705	-				-1.6
3,651,778	+				-3.2
3,651,778	+				-4.8
3,651,778	+				-2.6
3,651,778	+				-1.2
3,651,778	+				-1.8
3,651,778	+				-3.7
3,651,778	+				-2.1
3,651,778	+				-3.1
3,651,779	-				-3.4
3,651,779	-				-3.4
3,651,779	-				-2.7
3,651,779	-				-3.5
3,651,779	-				-2.6
3,651,779	-				-4.5
3,651,779	-				-0.8
3,651,779	-				-0.8
3,651,781	+				-3.9
3,651,782	-				-1.8
3,651,810	-				-2.4
3,651,810	-				-1.8
3,651,810	-				-2.6
3,651,824	+				-2.8
3,651,824	+				-2.2
3,651,824	+				-2.1
3,651,824	+				-2.4
3,651,824	+				-2.3
3,651,824	+				-0.8
3,651,824	+				-3.2
3,651,824	+				-0.8
3,651,824	+				-3.8
3,651,824	+				-3.4
3,651,824	+				-1.8
3,651,824	+				-3.9
3,651,824	+				-5.3
3,651,824	+				-2.2
3,651,824	+				-2.8
3,651,824	+				-2.2
3,651,824	+				-4.3
3,651,825	-				-3.5
3,651,825	-				-2.7
3,651,825	-				-3.1
3,651,825	-				-3.1
3,651,825	-				-2.7
3,651,923	-				-0.8
3,651,941	+				-1.4
3,651,942	-				-3.1
3,651,963	-				+0.8
3,651,963	-				-0.8
3,651,965	+				-0.6
3,651,965	+				-0.6
3,651,965	+				-2.4
3,651,965	+				+1.8
3,651,965	+				-0.7
3,651,966	-				-0.2
3,651,966	-				-3.6
3,651,968	+				-1.2
3,651,968	+				-0.7
3,651,968	+				-1.0
3,651,969	-				-1.2
3,651,969	-				-2.9
3,651,969	-				-3.9
3,651,969	-				-3.1
3,651,969	-				-1.8
3,651,997	+				-1.6
3,651,998	-				-2.7
3,652,109	+				-0.6
3,652,115	+				-0.8
3,652,115	+				-2.6
3,652,116	-				-0.8
3,652,116	-				-0.2
3,652,116	-				-2.6
3,652,132	+				-1.6
3,652,132	+				-3.3
3,652,133	-				-3.8
3,652,133	-				-2.2
3,652,134	+				-3.2
3,652,134	+				-1.6
3,652,135	-				-2.4
3,652,135	-				-2.6
3,652,135	-				-3.2
3,652,135	-				-3.2
3,652,135	-				-1.4
3,652,155	+				-2.2
3,652,172	-				-2.1
3,652,172	-				-1.2
3,652,220	+				-3.3
3,652,220	+				-1.8
3,652,220	+				-0.2
3,652,220	+				-2.4
3,652,220	+				-3.1
3,652,220	+				-2.4
3,652,220	+				-3.6
3,652,220	+				-3.5
3,652,221	-				-2.8
3,652,221	-				-1.8
3,652,221	-				-3.4
3,652,221	-				-2.1
3,652,221	-				-0.8
3,652,221	-				-0.8
3,652,249	-				-2.8
3,652,285	+				-0.2
3,652,285	+				-2.9
3,652,286	-				-1.6
3,652,286	-				-0.8
3,652,428	+		IAI47_17225	0.18	-2.7
3,652,429	-		IAI47_17225	0.18	-3.7
3,652,438	+		IAI47_17225	0.18	-1.6
3,652,439	-		IAI47_17225	0.18	-2.7
3,652,472	+		IAI47_17225	0.20	-3.9
3,652,472	+		IAI47_17225	0.20	-3.3
3,652,472	+		IAI47_17225	0.20	-1.2
3,652,472	+		IAI47_17225	0.20	-2.4
3,652,473	-		IAI47_17225	0.20	-1.8
3,652,473	-		IAI47_17225	0.20	-3.9
3,652,473	-		IAI47_17225	0.20	-2.1
3,652,473	-		IAI47_17225	0.20	-2.4
3,652,473	-		IAI47_17225	0.20	-2.4
3,652,497	+		IAI47_17225	0.21	-2.4
3,652,590	+		IAI47_17225	0.27	-2.6
3,652,590	+		IAI47_17225	0.27	-2.6
3,652,591	-		IAI47_17225	0.27	-2.7
3,652,591	-		IAI47_17225	0.27	-3.7
3,652,591	-		IAI47_17225	0.27	-2.2
3,652,633	-		IAI47_17225	0.29	-1.8
3,652,633	-		IAI47_17225	0.29	-2.9
3,652,644	+		IAI47_17225	0.30	-1.8
3,652,644	+		IAI47_17225	0.30	-2.4
3,652,644	+		IAI47_17225	0.30	-2.6
3,652,645	-		IAI47_17225	0.30	-1.6
3,652,651	+		IAI47_17225	0.30	-2.4
3,652,651	+		IAI47_17225	0.30	-0.2
3,652,651	+		IAI47_17225	0.30	-3.3
3,652,651	+		IAI47_17225	0.30	-4.1
3,652,770	+		IAI47_17225	0.37	-3.9
3,652,770	+		IAI47_17225	0.37	-2.1
3,652,770	+		IAI47_17225	0.37	-4.5
3,652,770	+		IAI47_17225	0.37	-1.6
3,652,770	+		IAI47_17225	0.37	-4.6
3,652,770	+		IAI47_17225	0.37	-2.8
3,652,770	+		IAI47_17225	0.37	-1.2
3,652,770	+		IAI47_17225	0.37	-2.9
3,652,771	-		IAI47_17225	0.37	-0.2
3,652,771	-		IAI47_17225	0.37	-1.8
3,652,771	-		IAI47_17225	0.37	-1.8
3,652,783	+		IAI47_17225	0.38	-3.8
3,652,784	-		IAI47_17225	0.38	-1.2
3,652,839	+		IAI47_17225	0.41	-1.8
3,652,882	+		IAI47_17225	0.43	-1.6
3,652,882	+		IAI47_17225	0.43	-4.7
3,652,883	-		IAI47_17225	0.43	-3.9
3,652,883	-		IAI47_17225	0.43	-1.6
3,652,883	-		IAI47_17225	0.43	-1.6
3,652,956	+		IAI47_17225	0.48	-3.1
3,652,956	+		IAI47_17225	0.48	-2.1
3,652,956	+		IAI47_17225	0.48	-4.1
3,652,956	+		IAI47_17225	0.48	-2.4
3,652,957	-		IAI47_17225	0.48	-2.2
3,652,957	-		IAI47_17225	0.48	-3.2
3,652,957	-		IAI47_17225	0.48	-4.2
3,652,957	-		IAI47_17225	0.48	-2.4
3,652,957	-		IAI47_17225	0.48	-2.8
3,652,957	-		IAI47_17225	0.48	-0.8
3,652,957	-		IAI47_17225	0.48	-2.2
3,652,966	+		IAI47_17225	0.48	-2.6
3,652,966	+		IAI47_17225	0.48	-2.1
3,652,967	-		IAI47_17225	0.48	-2.1
3,652,967	-		IAI47_17225	0.48	-2.7
3,652,967	-		IAI47_17225	0.48	-2.1
3,653,017	+		IAI47_17225	0.51	-4.8
3,653,017	+		IAI47_17225	0.51	-1.8
3,653,017	+		IAI47_17225	0.51	-2.8
3,653,102	+		IAI47_17225	0.56	-1.8
3,653,103	-		IAI47_17225	0.56	-1.6
3,653,103	-		IAI47_17225	0.56	-1.2
3,653,103	-		IAI47_17225	0.56	-2.8
3,653,103	-		IAI47_17225	0.56	-3.2
3,653,115	+		IAI47_17225	0.57	-1.2
3,653,115	+		IAI47_17225	0.57	-2.1
3,653,115	+		IAI47_17225	0.57	-3.8
3,653,116	-		IAI47_17225	0.57	-3.2
3,653,151	+		IAI47_17225	0.59	-2.2
3,653,151	+		IAI47_17225	0.59	-2.6
3,653,151	+		IAI47_17225	0.59	-4.4
3,653,152	-		IAI47_17225	0.59	-3.3
3,653,239	+		IAI47_17225	0.64	-2.6
3,653,240	-		IAI47_17225	0.64	-3.8
3,653,240	-		IAI47_17225	0.64	-2.4
3,653,240	-		IAI47_17225	0.64	-2.6
3,653,259	+		IAI47_17225	0.65	-2.9
3,653,259	+		IAI47_17225	0.65	-3.9
3,653,259	+		IAI47_17225	0.65	-4.5
3,653,260	-		IAI47_17225	0.65	-2.7
3,653,260	-		IAI47_17225	0.65	-1.8
3,653,260	-		IAI47_17225	0.65	-1.6
3,653,271	+		IAI47_17225	0.65	-4.4
3,653,271	+		IAI47_17225	0.65	-3.1
3,653,271	+		IAI47_17225	0.65	-0.2
3,653,271	+		IAI47_17225	0.65	-0.8
3,653,305	+		IAI47_17225	0.67	-3.4
3,653,347	+		IAI47_17225	0.70	-4.5
3,653,347	+		IAI47_17225	0.70	-2.6
3,653,347	+		IAI47_17225	0.70	-2.1
3,653,347	+		IAI47_17225	0.70	-2.1
3,653,348	-		IAI47_17225	0.70	-1.2
3,653,348	-		IAI47_17225	0.70	-2.4
3,653,348	-		IAI47_17225	0.70	-3.1
3,653,348	-		IAI47_17225	0.70	-2.8
3,653,391	+		IAI47_17225	0.72	-3.6
3,653,391	+		IAI47_17225	0.72	-2.4
3,653,391	+		IAI47_17225	0.72	-0.8
3,653,391	+		IAI47_17225	0.72	-2.4
3,653,392	-		IAI47_17225	0.72	-3.2
3,653,392	-		IAI47_17225	0.72	-2.4
3,653,392	-		IAI47_17225	0.72	-2.1
3,653,392	-		IAI47_17225	0.72	-4.3
3,653,404	-		IAI47_17225	0.73	-3.4
3,653,565	+		IAI47_17225	0.82	-3.2
3,653,565	+		IAI47_17225	0.82	-1.2
3,653,565	+		IAI47_17225	0.82	-2.9
3,653,565	+		IAI47_17225	0.82	-2.2
3,653,565	+		IAI47_17225	0.82	-1.2
3,653,565	+		IAI47_17225	0.82	-2.9
3,653,565	+		IAI47_17225	0.82	-2.7
3,653,565	+		IAI47_17225	0.82	-1.6
3,653,565	+		IAI47_17225	0.82	-2.9
3,653,565	+		IAI47_17225	0.82	-2.4
3,653,565	+		IAI47_17225	0.82	-4.2
3,653,566	-		IAI47_17225	0.82	-0.8
3,653,566	-		IAI47_17225	0.82	-4.1
3,653,566	-		IAI47_17225	0.82	-3.2
3,653,566	-		IAI47_17225	0.82	-2.8
3,653,566	-		IAI47_17225	0.82	-2.6
3,653,566	-		IAI47_17225	0.82	-3.9
3,653,566	-		IAI47_17225	0.82	-3.3
3,653,566	-		IAI47_17225	0.82	-3.5
3,653,566	-		IAI47_17225	0.82	-1.6
3,653,566	-		IAI47_17225	0.82	-2.7
3,653,566	-		IAI47_17225	0.82	-4.3
3,653,569	+		IAI47_17225	0.82	-2.1
3,653,569	+		IAI47_17225	0.82	-2.7
3,653,569	+		IAI47_17225	0.82	-1.6
3,653,570	-		IAI47_17225	0.82	-3.1
3,653,582	+		IAI47_17225	0.83	-2.8
3,653,582	+		IAI47_17225	0.83	-2.6
3,653,582	+		IAI47_17225	0.83	-4.0
3,653,583	-		IAI47_17225	0.83	-2.4
3,653,599	-		IAI47_17225	0.84	-3.6
3,653,599	-		IAI47_17225	0.84	-2.4
3,653,656	+		IAI47_17225	0.87	-3.4
3,653,656	+		IAI47_17225	0.87	-2.9
3,653,656	+		IAI47_17225	0.87	-4.5
3,653,656	+		IAI47_17225	0.87	-4.4
3,653,656	+		IAI47_17225	0.87	-2.1
3,653,657	-		IAI47_17225	0.87	-3.2
3,653,695	+		IAI47_17225	0.90	-4.1
3,653,695	+		IAI47_17225	0.90	+0.2
3,653,696	-		IAI47_17225	0.90	-2.1
3,653,696	-		IAI47_17225	0.90	-3.9
3,653,696	-		IAI47_17225	0.90	-2.4
3,653,696	-		IAI47_17225	0.90	-4.8
3,653,696	-		IAI47_17225	0.90	-1.8
3,653,696	-		IAI47_17225	0.90	-4.8
3,653,719	+				-3.2
3,653,719	+				-2.2
3,653,719	+				-0.8
3,653,719	+				-3.9
3,653,719	+				-3.2
3,653,719	+				-2.9
3,653,719	+				-1.8
3,653,719	+				-2.2
3,653,719	+				-4.6
3,653,719	+				-2.6
3,653,720	-				-1.2
3,653,720	-				-1.6
3,653,720	-				-2.6
3,653,720	-				-3.7
3,653,720	-				-3.2
3,653,720	-				-4.1
3,653,720	-				-1.6
3,653,720	-				-3.6
3,653,720	-				-2.6
3,653,720	-				-3.2
3,653,720	-				-2.1
3,653,725	+				-2.6
3,653,725	+				-1.6
3,653,725	+				-2.7
3,653,726	-				-2.6
3,653,726	-				-2.2
3,653,726	-				-2.6
3,653,726	-				-3.1
3,653,726	-				-3.6
3,653,776	+				-3.2
3,653,776	+				-0.2
3,653,776	+				-3.4
3,653,776	+				-2.2
3,653,777	-				-3.2
3,653,777	-				-3.7
3,653,777	-				-3.4
3,653,777	-				-2.6
3,653,777	-				-2.1
3,653,777	-				-1.6
3,653,777	-				-4.2
3,653,777	-				-1.6
3,653,777	-				-1.8
3,653,827	+				-4.3
3,653,827	+				-2.1
3,653,827	+				-2.2
3,653,828	-				-3.1
3,653,828	-				-1.2
3,653,857	+				-3.1
3,653,857	+				-3.6
3,653,858	-				+0.8
3,653,858	-				-0.8
3,653,858	-				-1.8
3,653,872	+				-0.8
3,653,872	+				-2.9
3,653,873	-				-2.3
3,653,873	-				-0.5
3,653,873	-				-1.2
3,653,873	-				-3.4
3,653,878	+				+0.4
3,653,879	-				-0.2
3,653,948	+				-1.1
3,653,948	+				+0.1
3,653,949	-				-0.2
3,653,949	-				-0.4
3,653,982	+				+0.2
3,653,982	+				+1.0
3,653,992	+				-0.2
3,653,992	+				+0.8
3,653,992	+				+0.4
3,653,993	-				-1.3
3,654,137	+		IAI47_17230	0.30	+0.4
3,654,148	+		IAI47_17230	0.32	+0.8
3,654,196	+		IAI47_17230	0.42	-1.2
3,654,196	+		IAI47_17230	0.42	-1.5
3,654,196	+		IAI47_17230	0.42	-1.5
3,654,196	+		IAI47_17230	0.42	+0.7
3,654,197	-		IAI47_17230	0.42	-1.4
3,654,197	-		IAI47_17230	0.42	+0.2
3,654,197	-		IAI47_17230	0.42	-1.2
3,654,197	-		IAI47_17230	0.42	-1.2
3,654,227	+		IAI47_17230	0.49	-0.6
3,654,227	+		IAI47_17230	0.49	-0.2
3,654,228	-		IAI47_17230	0.49	-0.2
3,654,228	-		IAI47_17230	0.49	-0.7
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