Strain Fitness in Pantoea sp. MT58 around IAI47_15660

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
3,301,773	+				-0.3
3,301,781	-				-1.9
3,301,781	-				+0.7
3,301,890	+				+0.4
3,301,890	+				-0.9
3,301,928	+		IAI47_15655	0.14	-0.5
3,301,928	+		IAI47_15655	0.14	-0.0
3,301,928	+		IAI47_15655	0.14	-2.1
3,301,928	+		IAI47_15655	0.14	+0.0
3,301,929	-		IAI47_15655	0.14	-1.1
3,301,929	-		IAI47_15655	0.14	-0.3
3,301,929	-		IAI47_15655	0.14	-0.0
3,301,929	-		IAI47_15655	0.14	+0.2
3,302,016	+		IAI47_15655	0.25	-0.1
3,302,016	+		IAI47_15655	0.25	+0.7
3,302,016	+		IAI47_15655	0.25	-0.5
3,302,017	-		IAI47_15655	0.25	-1.3
3,302,017	-		IAI47_15655	0.25	-0.4
3,302,033	-		IAI47_15655	0.27	+0.5
3,302,078	+		IAI47_15655	0.33	+0.2
3,302,078	+		IAI47_15655	0.33	-0.6
3,302,078	+		IAI47_15655	0.33	-2.0
3,302,078	+		IAI47_15655	0.33	-0.9
3,302,078	+		IAI47_15655	0.33	-0.9
3,302,078	+		IAI47_15655	0.33	-1.6
3,302,078	+		IAI47_15655	0.33	+0.9
3,302,078	+		IAI47_15655	0.33	+0.4
3,302,079	-		IAI47_15655	0.33	-0.9
3,302,079	-		IAI47_15655	0.33	+0.7
3,302,085	+		IAI47_15655	0.34	-0.1
3,302,085	+		IAI47_15655	0.34	+2.0
3,302,085	+		IAI47_15655	0.34	+0.8
3,302,085	+		IAI47_15655	0.34	-0.3
3,302,085	+		IAI47_15655	0.34	-0.4
3,302,085	+		IAI47_15655	0.34	+0.1
3,302,085	+		IAI47_15655	0.34	+0.7
3,302,086	-		IAI47_15655	0.34	+0.1
3,302,086	-		IAI47_15655	0.34	-0.2
3,302,086	-		IAI47_15655	0.34	+0.6
3,302,086	-		IAI47_15655	0.34	-0.5
3,302,144	+		IAI47_15655	0.41	+0.3
3,302,145	-		IAI47_15655	0.41	+0.7
3,302,145	-		IAI47_15655	0.41	-0.1
3,302,145	-		IAI47_15655	0.41	-0.1
3,302,253	-		IAI47_15655	0.55	-0.0
3,302,265	+		IAI47_15655	0.56	-0.3
3,302,267	+		IAI47_15655	0.56	+0.1
3,302,267	+		IAI47_15655	0.56	+1.0
3,302,267	+		IAI47_15655	0.56	-0.5
3,302,268	-		IAI47_15655	0.57	-0.2
3,302,268	-		IAI47_15655	0.57	-0.9
3,302,268	-		IAI47_15655	0.57	-0.7
3,302,272	+		IAI47_15655	0.57	+0.6
3,302,273	-		IAI47_15655	0.57	-0.3
3,302,273	-		IAI47_15655	0.57	-0.5
3,302,353	+		IAI47_15655	0.67	+1.0
3,302,353	+		IAI47_15655	0.67	-1.6
3,302,354	-		IAI47_15655	0.67	+1.2
3,302,391	-		IAI47_15655	0.72	+0.1
3,302,407	+		IAI47_15655	0.74	+1.1
3,302,556	+				-0.3
3,302,556	+				+3.7
3,302,556	+				+0.4
3,302,556	+				-0.3
3,302,557	-				-0.9
3,302,557	-				+0.4
3,302,557	-				+0.4
3,302,557	-				+0.4
3,302,557	-				+0.9
3,302,557	-				+0.5
3,302,557	-				+1.7
3,302,557	-				+0.6
3,302,557	-				-0.1
3,302,559	-				+0.7
3,302,579	+				-0.6
3,302,579	+				-0.1
3,302,580	-				-0.3
3,302,580	-				-1.3
3,303,041	+		IAI47_15660	0.48	+1.1
3,303,041	+		IAI47_15660	0.48	+0.2
3,303,041	+		IAI47_15660	0.48	+0.7
3,303,042	-		IAI47_15660	0.48	+0.7
3,303,042	-		IAI47_15660	0.48	-1.0
3,303,042	-		IAI47_15660	0.48	+0.5
3,303,060	-		IAI47_15660	0.51	+0.7
3,303,107	+		IAI47_15660	0.56	+1.3
3,303,107	+		IAI47_15660	0.56	-0.7
3,303,107	+		IAI47_15660	0.56	+0.1
3,303,108	-		IAI47_15660	0.56	+1.1
3,303,108	-		IAI47_15660	0.56	+1.3
3,303,221	+		IAI47_15660	0.69	+0.2
3,303,221	+		IAI47_15660	0.69	-0.3
3,303,222	-		IAI47_15660	0.69	-0.9
3,303,222	-		IAI47_15660	0.69	+0.0
3,303,222	-		IAI47_15660	0.69	+0.7
3,303,222	-		IAI47_15660	0.69	-0.6
3,303,247	+		IAI47_15660	0.72	+0.6
3,303,247	+		IAI47_15660	0.72	+0.7
3,303,248	-		IAI47_15660	0.73	-0.9
3,303,248	-		IAI47_15660	0.73	-0.2
3,303,415	+				-0.9
3,303,437	+				-1.2
3,303,480	+				+1.4
3,303,480	+				-0.7
3,303,480	+				-0.5
3,303,480	+				-0.0
3,303,480	+				+0.9
3,303,480	+				+0.5
3,303,481	-				+0.1
3,303,481	-				+1.6
3,303,505	+				-0.7
3,303,505	+				-0.1
3,303,505	+				-0.1
3,303,530	-				+1.1
3,303,593	+		IAI47_15665	0.17	-0.0
3,303,593	+		IAI47_15665	0.17	-1.2
3,303,593	+		IAI47_15665	0.17	+0.5
3,303,594	-		IAI47_15665	0.17	+0.1
3,303,594	-		IAI47_15665	0.17	+0.5
3,303,594	-		IAI47_15665	0.17	-0.4
3,303,594	-		IAI47_15665	0.17	+0.2
3,303,594	-		IAI47_15665	0.17	-0.1
3,303,610	+		IAI47_15665	0.21	-0.6
3,303,650	+		IAI47_15665	0.31	+1.6
3,303,651	-		IAI47_15665	0.32	-0.2
3,303,664	+		IAI47_15665	0.35	-2.6
3,303,664	+		IAI47_15665	0.35	-1.4
3,303,665	-		IAI47_15665	0.35	-0.4
3,303,665	-		IAI47_15665	0.35	-0.7
3,303,668	+		IAI47_15665	0.36	-0.2
3,303,668	+		IAI47_15665	0.36	+0.6
3,303,668	+		IAI47_15665	0.36	-0.1
3,303,668	+		IAI47_15665	0.36	-0.3
3,303,668	+		IAI47_15665	0.36	-1.0
3,303,669	-		IAI47_15665	0.36	+0.5
3,303,669	-		IAI47_15665	0.36	-1.1
3,303,669	-		IAI47_15665	0.36	+0.5
3,303,669	-		IAI47_15665	0.36	+0.1
3,303,669	-		IAI47_15665	0.36	-1.6
3,303,670	+		IAI47_15665	0.37	+0.6
3,303,670	+		IAI47_15665	0.37	+1.3
3,303,671	-		IAI47_15665	0.37	+0.6
3,303,701	+		IAI47_15665	0.45	-0.4
3,303,701	+		IAI47_15665	0.45	+0.1
3,303,701	+		IAI47_15665	0.45	+1.0
3,303,701	+		IAI47_15665	0.45	+0.1
3,303,701	+		IAI47_15665	0.45	+2.0
3,303,701	+		IAI47_15665	0.45	+0.9
3,303,701	+		IAI47_15665	0.45	-0.1
3,303,701	+		IAI47_15665	0.45	+0.1
3,303,701	+		IAI47_15665	0.45	+0.1
3,303,702	-		IAI47_15665	0.45	+0.7
3,303,702	-		IAI47_15665	0.45	+0.1
3,303,702	-		IAI47_15665	0.45	+0.4
3,303,702	-		IAI47_15665	0.45	+0.0
3,303,702	-		IAI47_15665	0.45	+1.1
3,303,702	-		IAI47_15665	0.45	-0.3
3,303,702	-		IAI47_15665	0.45	+0.7
3,303,778	+		IAI47_15665	0.65	+0.0
3,303,778	+		IAI47_15665	0.65	-0.4
3,303,779	-		IAI47_15665	0.65	+0.1
3,303,779	-		IAI47_15665	0.65	+1.3
3,303,779	-		IAI47_15665	0.65	+1.0
3,303,779	-		IAI47_15665	0.65	-0.8
3,303,780	+		IAI47_15665	0.66	+1.4
3,303,780	+		IAI47_15665	0.66	-0.1
3,303,781	-		IAI47_15665	0.66	+0.1
3,303,781	-		IAI47_15665	0.66	+0.1
3,303,781	-		IAI47_15665	0.66	+0.7
3,303,781	-		IAI47_15665	0.66	-0.6
3,303,781	-		IAI47_15665	0.66	-0.4
3,303,783	+		IAI47_15665	0.66	-0.7
3,303,783	+		IAI47_15665	0.66	+1.0
3,303,783	+		IAI47_15665	0.66	+1.1
3,303,783	+		IAI47_15665	0.66	+0.3
3,303,783	+		IAI47_15665	0.66	-0.2
3,303,783	+		IAI47_15665	0.66	+1.4
3,303,783	+		IAI47_15665	0.66	-0.1
3,303,784	-		IAI47_15665	0.67	+0.3
3,303,784	-		IAI47_15665	0.67	-0.9
3,303,784	-		IAI47_15665	0.67	+0.7
3,303,784	-		IAI47_15665	0.67	+0.6
3,303,787	+		IAI47_15665	0.67	+0.3
3,303,787	+		IAI47_15665	0.67	+0.4
3,303,788	-		IAI47_15665	0.68	-0.7
3,303,788	-		IAI47_15665	0.68	-0.0
3,303,797	+		IAI47_15665	0.70	-0.7
3,303,797	+		IAI47_15665	0.70	+0.0
3,303,797	+		IAI47_15665	0.70	+1.7
3,303,797	+		IAI47_15665	0.70	+0.4
3,303,798	-		IAI47_15665	0.70	+0.7
3,303,798	-		IAI47_15665	0.70	-0.0
3,303,798	-		IAI47_15665	0.70	-0.7
3,303,798	-		IAI47_15665	0.70	+0.1
3,303,798	-		IAI47_15665	0.70	-0.9
3,303,798	-		IAI47_15665	0.70	+1.3
3,303,848	+		IAI47_15665	0.83	-0.1
3,303,848	+		IAI47_15665	0.83	-1.4
3,303,924	+				+0.2
3,303,979	-				-0.9
3,303,979	-				+2.2
3,304,034	-				-0.5
3,304,061	+				+0.7
3,304,061	+				+0.4
3,304,061	+				+0.5
3,304,061	+				+0.1
3,304,061	+				+0.0
3,304,062	-				-0.2
3,304,062	-				+1.1
3,304,062	-				+1.1
3,304,119	-		IAI47_15670	0.14	-0.5
3,304,176	+		IAI47_15670	0.20	-0.0
3,304,176	+		IAI47_15670	0.20	+1.7
3,304,188	+		IAI47_15670	0.21	-0.0
3,304,189	-		IAI47_15670	0.21	+0.0
3,304,189	-		IAI47_15670	0.21	-0.1
3,304,198	+		IAI47_15670	0.22	+0.9
3,304,198	+		IAI47_15670	0.22	+1.9
3,304,198	+		IAI47_15670	0.22	-0.3
3,304,198	+		IAI47_15670	0.22	+2.0
3,304,199	-		IAI47_15670	0.22	-1.3
3,304,199	-		IAI47_15670	0.22	-1.3
3,304,199	-		IAI47_15670	0.22	+2.7
3,304,215	+		IAI47_15670	0.23	+0.8
3,304,215	+		IAI47_15670	0.23	-0.0
3,304,215	+		IAI47_15670	0.23	+1.6
3,304,216	-		IAI47_15670	0.24	+0.3
3,304,218	+		IAI47_15670	0.24	-1.9
3,304,218	+		IAI47_15670	0.24	-0.7
3,304,218	+		IAI47_15670	0.24	+0.9
3,304,240	+		IAI47_15670	0.26	+0.9
3,304,274	+		IAI47_15670	0.29	+0.8
3,304,274	+		IAI47_15670	0.29	+1.2
3,304,289	+		IAI47_15670	0.31	-0.3
3,304,290	-		IAI47_15670	0.31	+1.6
3,304,293	-		IAI47_15670	0.31	+1.1
3,304,293	-		IAI47_15670	0.31	+0.1
3,304,316	+		IAI47_15670	0.33	+0.1
3,304,317	-		IAI47_15670	0.34	-1.1
3,304,317	-		IAI47_15670	0.34	-0.5
3,304,318	+		IAI47_15670	0.34	-1.0
3,304,318	+		IAI47_15670	0.34	-0.2
3,304,319	-		IAI47_15670	0.34	-0.7
3,304,324	+		IAI47_15670	0.34	-0.6
3,304,324	+		IAI47_15670	0.34	-0.0
3,304,324	+		IAI47_15670	0.34	-0.7
3,304,325	-		IAI47_15670	0.34	-1.6
3,304,325	-		IAI47_15670	0.34	+0.7
3,304,325	-		IAI47_15670	0.34	-0.1
3,304,325	-		IAI47_15670	0.34	-1.3
3,304,325	-		IAI47_15670	0.34	+1.5
3,304,325	-		IAI47_15670	0.34	-0.1
3,304,399	+		IAI47_15670	0.42	+0.1
3,304,418	+		IAI47_15670	0.43	+0.8
3,304,419	-		IAI47_15670	0.44	-0.6
3,304,422	+		IAI47_15670	0.44	+1.3
3,304,422	+		IAI47_15670	0.44	+0.4
3,304,423	-		IAI47_15670	0.44	+0.6
3,304,423	-		IAI47_15670	0.44	+0.7
3,304,434	+		IAI47_15670	0.45	+0.9
3,304,435	-		IAI47_15670	0.45	+0.7
3,304,435	-		IAI47_15670	0.45	-0.4
3,304,435	-		IAI47_15670	0.45	-0.7
3,304,452	+		IAI47_15670	0.47	+0.1
3,304,453	-		IAI47_15670	0.47	-0.3
3,304,474	+		IAI47_15670	0.49	+0.1
3,304,474	+		IAI47_15670	0.49	-0.3
3,304,475	-		IAI47_15670	0.49	+0.7
3,304,475	-		IAI47_15670	0.49	+0.1