Strain Fitness in Pantoea sp. MT58 around IAI47_11925

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
2,522,617	+				+0.2
2,522,617	+				+0.0
2,522,617	+				+0.1
2,522,627	+				+1.9
2,522,769	+		IAI47_11920	0.21	-0.6
2,522,769	+		IAI47_11920	0.21	+0.4
2,522,799	+		IAI47_11920	0.26	-0.0
2,522,893	+		IAI47_11920	0.41	+0.3
2,522,893	+		IAI47_11920	0.41	-0.0
2,522,893	+		IAI47_11920	0.41	-1.4
2,522,895	+		IAI47_11920	0.41	+0.2
2,522,895	+		IAI47_11920	0.41	-0.4
2,522,895	+		IAI47_11920	0.41	-0.3
2,522,895	+		IAI47_11920	0.41	-0.1
2,522,928	+		IAI47_11920	0.46	+0.7
2,522,970	+		IAI47_11920	0.53	-0.3
2,522,970	+		IAI47_11920	0.53	+0.8
2,522,970	+		IAI47_11920	0.53	-0.5
2,523,020	+		IAI47_11920	0.60	-0.1
2,523,020	+		IAI47_11920	0.60	-0.2
2,523,020	+		IAI47_11920	0.60	+0.4
2,523,020	+		IAI47_11920	0.60	+1.7
2,523,020	+		IAI47_11920	0.60	-0.3
2,523,043	+		IAI47_11920	0.64	-0.8
2,523,043	+		IAI47_11920	0.64	-0.4
2,523,043	+		IAI47_11920	0.64	-1.2
2,523,043	+		IAI47_11920	0.64	+0.7
2,523,043	+		IAI47_11920	0.64	+0.7
2,523,043	+		IAI47_11920	0.64	-0.0
2,523,043	+		IAI47_11920	0.64	-0.6
2,523,043	+		IAI47_11920	0.64	-0.7
2,523,043	+		IAI47_11920	0.64	-0.5
2,523,043	+		IAI47_11920	0.64	+0.1
2,523,043	+		IAI47_11920	0.64	-0.2
2,523,043	+		IAI47_11920	0.64	+0.8
2,523,043	+		IAI47_11920	0.64	+0.3
2,523,043	+		IAI47_11920	0.64	+0.7
2,523,043	+		IAI47_11920	0.64	-1.1
2,523,043	+		IAI47_11920	0.64	+0.7
2,523,043	+		IAI47_11920	0.64	+0.7
2,523,043	+		IAI47_11920	0.64	+0.7
2,523,043	+		IAI47_11920	0.64	-0.6
2,523,043	+		IAI47_11920	0.64	+0.7
2,523,043	+		IAI47_11920	0.64	-0.6
2,523,043	+		IAI47_11920	0.64	+0.7
2,523,047	+		IAI47_11920	0.65	+1.7
2,523,047	+		IAI47_11920	0.65	+0.6
2,523,047	+		IAI47_11920	0.65	-0.5
2,523,047	+		IAI47_11920	0.65	+0.9
2,523,047	+		IAI47_11920	0.65	+0.5
2,523,047	+		IAI47_11920	0.65	-0.8
2,523,047	+		IAI47_11920	0.65	+1.0
2,523,075	+		IAI47_11920	0.69	+0.7
2,523,075	+		IAI47_11920	0.69	+0.7
2,523,075	+		IAI47_11920	0.69	-0.2
2,523,075	+		IAI47_11920	0.69	+1.9
2,523,075	+		IAI47_11920	0.69	-0.5
2,523,111	+		IAI47_11920	0.75	-0.7
2,523,111	+		IAI47_11920	0.75	+0.6
2,523,111	+		IAI47_11920	0.75	-0.1
2,523,126	+		IAI47_11920	0.77	-0.3
2,523,126	+		IAI47_11920	0.77	+1.9
2,523,126	+		IAI47_11920	0.77	-1.5
2,523,126	+		IAI47_11920	0.77	+1.4
2,523,126	+		IAI47_11920	0.77	-0.3
2,523,146	+		IAI47_11920	0.80	+1.0
2,523,146	+		IAI47_11920	0.80	+0.7
2,523,146	+		IAI47_11920	0.80	+0.3
2,523,153	+		IAI47_11920	0.81	-1.1
2,523,153	+		IAI47_11920	0.81	+0.3
2,523,271	+				+0.7
2,523,271	+				-0.0
2,524,685	+				+0.3
2,524,685	+				-0.4
2,524,685	+				-0.1
2,524,686	-				-0.3
2,524,686	-				+0.1
2,524,688	+				+0.3
2,524,689	-				-1.3
2,524,689	-				-0.5
2,524,737	+				-0.1
2,524,750	+				-0.3
2,524,751	-				-2.8
2,524,781	-				-1.9
2,524,792	-				-3.3
2,524,792	-				-4.1
2,524,850	+				-2.5
2,524,851	-				-1.3
2,524,851	-				-1.9
2,524,851	-				-1.3
2,525,083	+		IAI47_11930	0.43	-3.3
2,525,083	+		IAI47_11930	0.43	-3.0
2,525,083	+		IAI47_11930	0.43	-2.1
2,525,083	+		IAI47_11930	0.43	-0.9
2,525,083	+		IAI47_11930	0.43	-2.9
2,525,084	-		IAI47_11930	0.44	-2.9
2,525,084	-		IAI47_11930	0.44	-2.5
2,525,084	-		IAI47_11930	0.44	-1.3
2,525,175	+		IAI47_11930	0.57	-1.7
2,525,254	+		IAI47_11930	0.69	-2.5
2,525,255	-		IAI47_11930	0.69	-3.2
2,525,255	-		IAI47_11930	0.69	-0.9
2,525,301	+		IAI47_11930	0.76	-2.1
2,525,302	-		IAI47_11930	0.76	-3.2
2,525,302	-		IAI47_11930	0.76	-1.7
2,525,302	-		IAI47_11930	0.76	-3.5
2,525,326	+		IAI47_11930	0.80	-2.7
2,525,474	+				-3.4
2,525,475	-				-0.9
2,525,489	+				-2.1
2,525,489	+				-2.3
2,525,490	-				-3.1
2,525,490	-				-1.3
2,525,530	+				-0.3
2,525,530	+				-0.7
2,525,530	+				-0.3
2,525,531	-				-3.4
2,525,531	-				-2.5
2,525,553	+				-0.9
2,525,577	+				-1.9
2,525,577	+				-4.3
2,525,577	+				-2.7
2,525,577	+				-2.2
2,525,577	+				-1.5
2,525,577	+				-2.7
2,525,578	-				-2.5
2,525,578	-				-2.5
2,525,595	-				-1.7
2,525,604	+				-2.7
2,525,605	-				-2.5