Strain Fitness in Pantoea sp. MT58 around IAI47_11510

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
2,434,743	+				-1.9
2,434,743	+				-1.9
2,434,773	+				-0.1
2,434,773	+				+0.6
2,434,774	-				+0.1
2,434,774	-				+1.0
2,434,774	-				+0.2
2,434,774	-				+0.5
2,434,781	+				+0.4
2,434,782	-				+0.1
2,434,782	-				+1.1
2,434,782	-				+0.1
2,434,782	-				+0.9
2,434,799	+				-0.1
2,434,799	+				+0.1
2,434,821	+				+0.2
2,434,821	+				+0.4
2,434,821	+				-0.5
2,434,822	-				+1.5
2,434,822	-				-0.2
2,434,822	-				+0.3
2,434,822	-				-0.3
2,434,844	+				+1.2
2,434,844	+				-0.7
2,434,844	+				-0.6
2,434,844	+				-0.4
2,434,845	-				+0.4
2,434,845	-				-0.9
2,434,845	-				+0.4
2,434,848	+				-0.0
2,434,848	+				+1.4
2,434,848	+				+2.2
2,434,848	+				-1.1
2,434,848	+				-0.5
2,434,848	+				+0.2
2,434,848	+				-0.4
2,434,848	+				+1.6
2,434,849	-				-0.2
2,434,849	-				+0.6
2,434,849	-				+0.4
2,434,849	-				+0.3
2,434,849	-				+0.1
2,434,849	-				-0.1
2,434,849	-				-0.6
2,434,849	-				-0.2
2,434,849	-				-0.4
2,434,849	-				-1.5
2,434,943	+				-1.4
2,434,949	-				-0.8
2,434,949	-				-0.1
2,434,964	+				-0.8
2,434,965	-				-0.4
2,434,965	-				+0.1
2,434,973	-				+0.2
2,434,973	-				+0.5
2,434,973	-				-0.9
2,434,982	+				+0.6
2,434,983	-				+0.6
2,434,983	-				+0.4
2,434,988	+				-0.4
2,434,990	+				+0.5
2,434,990	+				-0.4
2,434,990	+				+0.3
2,435,001	-				-1.2
2,435,009	-				-0.4
2,435,097	-				-0.2
2,435,102	-				-0.3
2,435,127	-				+1.2
2,435,158	-		IAI47_11505	0.14	+0.0
2,435,162	+		IAI47_11505	0.15	-1.2
2,435,192	-		IAI47_11505	0.23	-0.1
2,435,232	-		IAI47_11505	0.33	+0.6
2,435,233	+		IAI47_11505	0.34	+2.0
2,435,234	-		IAI47_11505	0.34	-0.9
2,435,234	-		IAI47_11505	0.34	-0.9
2,435,292	+		IAI47_11505	0.49	-0.4
2,435,334	-		IAI47_11505	0.60	-0.8
2,435,336	+		IAI47_11505	0.61	-0.5
2,435,337	-		IAI47_11505	0.61	+0.6
2,435,338	+		IAI47_11505	0.61	-0.1
2,435,341	-		IAI47_11505	0.62	-1.3
2,435,444	-		IAI47_11505	0.89	-0.4
2,435,444	-		IAI47_11505	0.89	+0.3
2,435,446	+		IAI47_11505	0.90	-0.1
2,435,446	+		IAI47_11505	0.90	-0.7
2,435,447	-		IAI47_11505	0.90	+0.1
2,435,466	-				+0.3
2,435,497	+				-0.6
2,435,497	+				+0.4
2,435,505	+				+0.1
2,435,523	+				-0.4
2,435,524	-				-0.0
2,435,528	-				+0.6
2,435,528	-				-0.8
2,435,528	-				-0.2
2,435,680	+		IAI47_11510	0.46	+0.9
2,435,680	+		IAI47_11510	0.46	-0.0
2,435,682	+		IAI47_11510	0.46	+1.2
2,435,682	+		IAI47_11510	0.46	-0.7
2,435,682	+		IAI47_11510	0.46	-0.7
2,435,682	+		IAI47_11510	0.46	-1.9
2,435,682	+		IAI47_11510	0.46	+0.2
2,435,683	-		IAI47_11510	0.47	-0.0
2,435,683	-		IAI47_11510	0.47	-2.1
2,435,686	+		IAI47_11510	0.48	-1.3
2,435,686	+		IAI47_11510	0.48	-0.6
2,435,686	+		IAI47_11510	0.48	-0.4
2,435,687	-		IAI47_11510	0.48	+0.9
2,435,687	-		IAI47_11510	0.48	-1.7
2,435,687	-		IAI47_11510	0.48	-0.1
2,435,687	-		IAI47_11510	0.48	-1.2
2,435,687	-		IAI47_11510	0.48	+1.0
2,435,698	+		IAI47_11510	0.51	+0.9
2,435,698	+		IAI47_11510	0.51	-0.6
2,435,699	-		IAI47_11510	0.51	-0.5
2,435,699	-		IAI47_11510	0.51	-0.7
2,435,699	-		IAI47_11510	0.51	+0.3
2,435,715	-		IAI47_11510	0.55	-1.8
2,435,865	+				-0.3
2,435,888	+				-0.8
2,435,921	+				+0.6
2,435,930	-				+0.6
2,435,995	+		IAI47_11515	0.18	-0.4
2,436,003	-		IAI47_11515	0.20	-1.2
2,436,003	-		IAI47_11515	0.20	+0.5
2,436,277	+				-1.1
2,436,278	-				-1.0
2,436,278	-				-0.9
2,436,278	-				-0.5
2,436,333	+				-0.6
2,436,334	-				-0.2
2,436,336	+				-0.4
2,436,336	+				-0.4
2,436,349	-				-1.2
2,436,349	-				-0.3
2,436,358	-				+0.5
2,436,396	+				-0.4
2,436,396	+				+1.2
2,436,397	-				-0.7
2,436,397	-				-0.5
2,436,397	-				-0.0
2,436,397	-				-0.4
2,436,561	-				+0.1