Strain Fitness in Pantoea sp. MT58 around IAI47_09170

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,930,582	+		IAI47_09160	0.90	+1.1
1,930,701	+				-0.3
1,930,702	-				-0.1
1,930,737	-				+0.2
1,930,746	+				+0.3
1,930,746	+				-0.0
1,930,765	+				+0.5
1,930,960	+		IAI47_09165	0.24	-1.9
1,931,044	+		IAI47_09165	0.35	-3.0
1,931,044	+		IAI47_09165	0.35	-2.5
1,931,044	+		IAI47_09165	0.35	-2.3
1,931,044	+		IAI47_09165	0.35	-3.3
1,931,045	-		IAI47_09165	0.35	-2.6
1,931,045	-		IAI47_09165	0.35	-2.3
1,931,045	-		IAI47_09165	0.35	-2.3
1,931,045	-		IAI47_09165	0.35	-2.5
1,931,045	-		IAI47_09165	0.35	-2.6
1,931,045	-		IAI47_09165	0.35	-1.9
1,931,045	-		IAI47_09165	0.35	-3.5
1,931,045	-		IAI47_09165	0.35	-2.3
1,931,045	-		IAI47_09165	0.35	-3.8
1,931,048	+		IAI47_09165	0.35	-2.6
1,931,048	+		IAI47_09165	0.35	-3.6
1,931,048	+		IAI47_09165	0.35	-2.5
1,931,048	+		IAI47_09165	0.35	-1.9
1,931,048	+		IAI47_09165	0.35	-4.2
1,931,048	+		IAI47_09165	0.35	-2.8
1,931,048	+		IAI47_09165	0.35	-1.3
1,931,049	-		IAI47_09165	0.35	-2.8
1,931,049	-		IAI47_09165	0.35	-1.9
1,931,049	-		IAI47_09165	0.35	-1.9
1,931,049	-		IAI47_09165	0.35	-3.1
1,931,049	-		IAI47_09165	0.35	-2.3
1,931,049	-		IAI47_09165	0.35	-3.4
1,931,049	-		IAI47_09165	0.35	-2.8
1,931,050	+		IAI47_09165	0.36	-2.6
1,931,050	+		IAI47_09165	0.36	-2.6
1,931,111	+		IAI47_09165	0.43	-2.4
1,931,111	+		IAI47_09165	0.43	-1.6
1,931,111	+		IAI47_09165	0.43	-2.3
1,931,111	+		IAI47_09165	0.43	-2.1
1,931,112	-		IAI47_09165	0.43	-2.8
1,931,112	-		IAI47_09165	0.43	-4.4
1,931,112	-		IAI47_09165	0.43	-2.3
1,931,112	-		IAI47_09165	0.43	-3.3
1,931,112	-		IAI47_09165	0.43	-2.2
1,931,117	+		IAI47_09165	0.44	-2.8
1,931,118	-		IAI47_09165	0.44	-1.9
1,931,118	-		IAI47_09165	0.44	-1.3
1,931,224	+		IAI47_09165	0.57	-3.9
1,931,224	+		IAI47_09165	0.57	-3.2
1,931,263	+		IAI47_09165	0.62	-1.6
1,931,263	+		IAI47_09165	0.62	-1.6
1,931,263	+		IAI47_09165	0.62	-0.9
1,931,263	+		IAI47_09165	0.62	-3.1
1,931,264	-		IAI47_09165	0.62	-2.6
1,931,264	-		IAI47_09165	0.62	-4.2
1,931,264	-		IAI47_09165	0.62	-1.3
1,931,264	-		IAI47_09165	0.62	-3.5
1,931,264	-		IAI47_09165	0.62	-3.3
1,931,264	-		IAI47_09165	0.62	-0.3
1,931,272	-		IAI47_09165	0.63	-2.5
1,931,272	-		IAI47_09165	0.63	-4.2
1,931,306	+		IAI47_09165	0.67	-4.0
1,931,544	-				-1.9
1,931,557	+				-0.3
1,931,557	+				-5.1
1,931,558	-				-4.2
1,931,558	-				-3.9
1,931,611	+				-1.9
1,931,686	+		IAI47_09170	0.10	-3.4
1,931,686	+		IAI47_09170	0.10	-1.9
1,931,687	-		IAI47_09170	0.10	-2.1
1,931,728	+		IAI47_09170	0.14	-2.1
1,931,729	-		IAI47_09170	0.14	-2.5
1,931,729	-		IAI47_09170	0.14	-2.5
1,931,752	+		IAI47_09170	0.16	-2.9
1,931,753	-		IAI47_09170	0.16	-2.1
1,931,753	-		IAI47_09170	0.16	-1.6
1,931,790	+		IAI47_09170	0.19	-1.0
1,931,790	+		IAI47_09170	0.19	-1.9
1,931,790	+		IAI47_09170	0.19	-4.1
1,931,790	+		IAI47_09170	0.19	-2.8
1,931,790	+		IAI47_09170	0.19	-2.5
1,931,791	-		IAI47_09170	0.19	-0.9
1,931,791	-		IAI47_09170	0.19	-3.6
1,931,791	-		IAI47_09170	0.19	-3.7
1,931,791	-		IAI47_09170	0.19	+0.7
1,931,791	-		IAI47_09170	0.19	-2.3
1,931,791	-		IAI47_09170	0.19	-3.4
1,931,791	-		IAI47_09170	0.19	-1.6
1,931,791	-		IAI47_09170	0.19	-3.4
1,931,791	-		IAI47_09170	0.19	-2.5
1,931,791	-		IAI47_09170	0.19	-2.1
1,931,925	+		IAI47_09170	0.30	-2.5
1,931,925	+		IAI47_09170	0.30	-0.9
1,931,926	-		IAI47_09170	0.30	-3.1
1,931,929	+		IAI47_09170	0.30	-4.0
1,931,929	+		IAI47_09170	0.30	-0.3
1,931,929	+		IAI47_09170	0.30	-2.1
1,931,947	+		IAI47_09170	0.32	-0.9
1,931,948	-		IAI47_09170	0.32	-1.3
1,932,125	-		IAI47_09170	0.47	-2.1
1,932,125	-		IAI47_09170	0.47	-2.5
1,932,125	-		IAI47_09170	0.47	-1.9
1,932,125	-		IAI47_09170	0.47	-1.6
1,932,125	-		IAI47_09170	0.47	-2.9
1,932,204	+		IAI47_09170	0.53	-1.3
1,932,204	+		IAI47_09170	0.53	-1.3
1,932,204	+		IAI47_09170	0.53	-1.6
1,932,204	+		IAI47_09170	0.53	-3.4
1,932,204	+		IAI47_09170	0.53	-2.9
1,932,205	-		IAI47_09170	0.54	-3.6
1,932,205	-		IAI47_09170	0.54	-2.1
1,932,205	-		IAI47_09170	0.54	-3.5
1,932,205	-		IAI47_09170	0.54	-1.9
1,932,205	-		IAI47_09170	0.54	-2.1
1,932,205	-		IAI47_09170	0.54	-1.6
1,932,205	-		IAI47_09170	0.54	-3.0
1,932,205	-		IAI47_09170	0.54	-4.2
1,932,219	+		IAI47_09170	0.55	-3.2
1,932,219	+		IAI47_09170	0.55	-2.6
1,932,220	-		IAI47_09170	0.55	-1.6
1,932,220	-		IAI47_09170	0.55	-1.6
1,932,250	+		IAI47_09170	0.57	-2.6
1,932,250	+		IAI47_09170	0.57	-1.9
1,932,251	-		IAI47_09170	0.57	-1.6
1,932,293	+		IAI47_09170	0.61	-2.3
1,932,294	-		IAI47_09170	0.61	-3.9
1,932,294	-		IAI47_09170	0.61	-1.8
1,932,328	+		IAI47_09170	0.64	-4.4
1,932,328	+		IAI47_09170	0.64	-3.0
1,932,328	+		IAI47_09170	0.64	-2.1
1,932,329	-		IAI47_09170	0.64	-1.9
1,932,329	-		IAI47_09170	0.64	-3.1
1,932,329	-		IAI47_09170	0.64	-4.2
1,932,361	+		IAI47_09170	0.67	-2.3
1,932,361	+		IAI47_09170	0.67	-2.9
1,932,361	+		IAI47_09170	0.67	-2.6
1,932,362	-		IAI47_09170	0.67	-4.2
1,932,362	-		IAI47_09170	0.67	-2.6
1,932,363	+		IAI47_09170	0.67	-2.3
1,932,363	+		IAI47_09170	0.67	-2.8
1,932,363	+		IAI47_09170	0.67	-3.2
1,932,363	+		IAI47_09170	0.67	-4.4
1,932,363	+		IAI47_09170	0.67	-1.3
1,932,363	+		IAI47_09170	0.67	-5.2
1,932,363	+		IAI47_09170	0.67	-2.1
1,932,363	+		IAI47_09170	0.67	-3.1
1,932,363	+		IAI47_09170	0.67	-4.5
1,932,363	+		IAI47_09170	0.67	-1.6
1,932,363	+		IAI47_09170	0.67	-2.8
1,932,363	+		IAI47_09170	0.67	-4.0
1,932,364	-		IAI47_09170	0.67	-3.0
1,932,364	-		IAI47_09170	0.67	-1.6
1,932,364	-		IAI47_09170	0.67	-2.1
1,932,364	-		IAI47_09170	0.67	-2.1
1,932,364	-		IAI47_09170	0.67	-3.7
1,932,364	-		IAI47_09170	0.67	-2.3
1,932,364	-		IAI47_09170	0.67	-4.2
1,932,364	-		IAI47_09170	0.67	-2.5
1,932,364	-		IAI47_09170	0.67	-2.8
1,932,364	-				-0.9
1,932,364	-		IAI47_09170	0.67	-1.6
1,932,364	-		IAI47_09170	0.67	-2.3
1,932,364	-		IAI47_09170	0.67	-2.3
1,932,364	-		IAI47_09170	0.67	-1.6
1,932,364	-		IAI47_09170	0.67	-2.8
1,932,540	+		IAI47_09170	0.82	-3.2
1,932,541	-		IAI47_09170	0.82	-1.3
1,932,593	-		IAI47_09170	0.86	-2.6
1,932,593	-		IAI47_09170	0.86	-2.3
1,932,606	+		IAI47_09170	0.87	-2.5
1,932,607	-		IAI47_09170	0.87	-3.0
1,932,607	-		IAI47_09170	0.87	-3.3
1,932,607	-		IAI47_09170	0.87	-3.3
1,932,614	+		IAI47_09170	0.88	-2.3
1,932,614	+		IAI47_09170	0.88	-3.6
1,932,615	-		IAI47_09170	0.88	-3.6
1,932,714	+				-0.3
1,932,714	+				-2.9
1,932,714	+				-3.6
1,932,714	+				-5.5
1,932,714	+				-3.1
1,932,714	+				-3.0
1,932,714	+				-1.6
1,932,715	-				-4.0
1,932,715	-				-2.5
1,932,716	-				-3.0
1,932,750	-				-3.9
1,932,761	+				-1.3
1,932,761	+				-3.0
1,932,761	+				-3.1
1,932,807	+				-2.5
1,932,808	-				+0.1
1,932,808	-				-0.1
1,932,928	+				-3.8
1,932,928	+				-0.9
1,932,928	+				-1.3
1,932,928	+				-4.9
1,932,929	-				-2.5
1,932,929	-				-2.3
1,933,035	+		IAI47_09175	0.17	-3.6
1,933,035	+		IAI47_09175	0.17	-3.2
1,933,036	-		IAI47_09175	0.17	-3.7
1,933,163	+		IAI47_09175	0.26	-1.9
1,933,163	+		IAI47_09175	0.26	-0.3
1,933,163	+		IAI47_09175	0.26	-2.1
1,933,163	+		IAI47_09175	0.26	-3.3
1,933,163	+		IAI47_09175	0.26	-1.3
1,933,163	+		IAI47_09175	0.26	-4.2
1,933,164	-		IAI47_09175	0.27	-1.3
1,933,164	-		IAI47_09175	0.27	-2.8
1,933,164	-		IAI47_09175	0.27	-2.6
1,933,164	-		IAI47_09175	0.27	-3.2
1,933,164	-		IAI47_09175	0.27	-0.3
1,933,164	-		IAI47_09175	0.27	-1.3
1,933,164	-		IAI47_09175	0.27	-0.9
1,933,214	-		IAI47_09175	0.30	-2.8
1,933,243	-		IAI47_09175	0.32	-3.9
1,933,243	-		IAI47_09175	0.32	-3.6
1,933,270	+		IAI47_09175	0.34	-2.6
1,933,270	+		IAI47_09175	0.34	-3.0
1,933,270	+		IAI47_09175	0.34	-4.8
1,933,270	+		IAI47_09175	0.34	-3.4
1,933,271	-		IAI47_09175	0.34	-3.2
1,933,271	-		IAI47_09175	0.34	-2.9
1,933,329	+		IAI47_09175	0.39	-3.1
1,933,330	-		IAI47_09175	0.39	-2.3
1,933,330	-		IAI47_09175	0.39	-3.5
1,933,330	-		IAI47_09175	0.39	-2.6
1,933,330	-		IAI47_09175	0.39	-0.3
1,933,347	+		IAI47_09175	0.40	-3.6
1,933,348	-		IAI47_09175	0.40	-2.3
1,933,377	-		IAI47_09175	0.42	-1.9
1,933,377	-		IAI47_09175	0.42	-1.6
1,933,391	-		IAI47_09175	0.43	-4.2
1,933,495	+		IAI47_09175	0.51	-2.9
1,933,496	-		IAI47_09175	0.51	-2.9
1,933,503	+		IAI47_09175	0.51	-3.1
1,933,503	+		IAI47_09175	0.51	-1.6
1,933,503	+		IAI47_09175	0.51	-3.2
1,933,504	-		IAI47_09175	0.51	-3.8
1,933,504	-		IAI47_09175	0.51	-2.9
1,933,504	-		IAI47_09175	0.51	-4.1
1,933,504	-		IAI47_09175	0.51	-3.2
1,933,510	+		IAI47_09175	0.52	-4.0
1,933,511	-		IAI47_09175	0.52	-3.8
1,933,511	-		IAI47_09175	0.52	-3.2
1,933,585	+		IAI47_09175	0.57	-3.3
1,933,585	+		IAI47_09175	0.57	-2.3
1,933,585	+		IAI47_09175	0.57	-2.1
1,933,586	-		IAI47_09175	0.57	-3.9
1,933,586	-		IAI47_09175	0.57	-3.6
1,933,586	-		IAI47_09175	0.57	-2.1
1,933,612	+		IAI47_09175	0.59	-2.1
1,933,612	+		IAI47_09175	0.59	-4.0
1,933,612	+		IAI47_09175	0.59	-2.9
1,933,613	-		IAI47_09175	0.59	-2.3
1,933,613	-		IAI47_09175	0.59	-3.1
1,933,627	+		IAI47_09175	0.60	-2.9
1,933,628	-		IAI47_09175	0.61	-2.8
1,933,666	+		IAI47_09175	0.63	-4.5
1,933,666	+		IAI47_09175	0.63	-3.2
1,933,725	+		IAI47_09175	0.68	-3.2