Strain Fitness in Pantoea sp. MT58 around IAI47_08180

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,723,920	+				-0.9
1,723,921	-				-1.8
1,723,921	-				-0.7
1,723,921	-				-0.2
1,723,927	-				-0.4
1,723,946	+				-0.4
1,723,947	-				-1.4
1,723,954	+				-0.7
1,723,954	+				-1.0
1,723,955	-				-0.3
1,723,992	+				-0.6
1,723,992	+				+1.9
1,723,992	+				-1.0
1,723,992	+				-0.5
1,723,993	-				-0.2
1,723,993	-				+0.5
1,723,994	+				-0.0
1,723,994	+				-0.3
1,723,994	+				-0.1
1,723,995	-				+2.0
1,724,044	+				+0.1
1,724,044	+				-0.1
1,724,045	-				+0.7
1,724,045	-				-2.1
1,724,046	+				+0.9
1,724,046	+				-0.0
1,724,046	+				-1.9
1,724,046	+				+0.1
1,724,046	+				+0.7
1,724,047	-				+0.7
1,724,047	-				-0.3
1,724,047	-				+1.6
1,724,063	+				+0.5
1,724,063	+				+1.1
1,724,063	+				+1.0
1,724,063	+				-0.0
1,724,063	+				-0.0
1,724,063	+				-0.8
1,724,063	+				-1.0
1,724,063	+				-0.0
1,724,063	+				+0.2
1,724,063	+				+1.7
1,724,064	-				+0.5
1,724,064	-				+0.7
1,724,064	-				+0.2
1,724,064	-				-0.2
1,724,064	-				+1.2
1,724,072	+				-2.8
1,724,073	-				-0.6
1,724,084	+				+1.7
1,724,084	+				-0.7
1,724,084	+				-0.1
1,724,084	+				-0.3
1,724,084	+				+1.1
1,724,084	+				+0.7
1,724,084	+				-0.1
1,724,084	+				-0.7
1,724,084	+				+0.1
1,724,085	-				-0.1
1,724,085	-				-0.6
1,724,085	-				-0.3
1,724,085	-				-0.2
1,724,085	-				-0.8
1,724,085	-				+0.0
1,724,085	-				-0.6
1,724,085	-				-2.0
1,724,085	-				+0.9
1,724,085	-				+0.7
1,724,085	-				+0.2
1,724,085	-				-0.7
1,724,085	-				+2.5
1,724,127	-				-0.5
1,724,127	-				-0.2
1,724,160	-				+0.5
1,724,236	-		IAI47_08175	0.19	+0.9
1,724,236	-		IAI47_08175	0.19	+0.7
1,724,236	-		IAI47_08175	0.19	+0.5
1,724,336	+		IAI47_08175	0.31	-2.1
1,724,336	+		IAI47_08175	0.31	-1.6
1,724,337	-		IAI47_08175	0.31	+1.4
1,724,337	-		IAI47_08175	0.31	-0.7
1,724,386	+		IAI47_08175	0.38	+1.0
1,724,386	+		IAI47_08175	0.38	-2.3
1,724,386	+		IAI47_08175	0.38	-0.4
1,724,386	+		IAI47_08175	0.38	+0.4
1,724,386	+		IAI47_08175	0.38	+0.1
1,724,386	+		IAI47_08175	0.38	-0.7
1,724,386	+		IAI47_08175	0.38	+1.4
1,724,387	-		IAI47_08175	0.38	+0.3
1,724,387	-		IAI47_08175	0.38	-0.4
1,724,387	-		IAI47_08175	0.38	+0.2
1,724,387	-		IAI47_08175	0.38	-0.1
1,724,411	+		IAI47_08175	0.41	+0.5
1,724,411	+		IAI47_08175	0.41	-1.0
1,724,411	+		IAI47_08175	0.41	+0.2
1,724,411	+		IAI47_08175	0.41	+0.3
1,724,411	+		IAI47_08175	0.41	-0.7
1,724,411	+		IAI47_08175	0.41	-0.9
1,724,412	-		IAI47_08175	0.41	-0.0
1,724,412	-		IAI47_08175	0.41	+0.5
1,724,412	-		IAI47_08175	0.41	+1.0
1,724,436	+		IAI47_08175	0.44	-1.2
1,724,436	+		IAI47_08175	0.44	-0.3
1,724,437	-		IAI47_08175	0.44	-0.9
1,724,437	-		IAI47_08175	0.44	-0.7
1,724,447	+		IAI47_08175	0.45	-0.7
1,724,447	+		IAI47_08175	0.45	-1.3
1,724,448	-		IAI47_08175	0.45	+0.9
1,724,454	+		IAI47_08175	0.46	+0.1
1,724,531	+		IAI47_08175	0.56	+0.3
1,724,545	+		IAI47_08175	0.57	+0.1
1,724,545	+		IAI47_08175	0.57	-1.0
1,724,545	+		IAI47_08175	0.57	+0.9
1,724,546	-		IAI47_08175	0.58	+0.1
1,724,546	-		IAI47_08175	0.58	-0.5
1,724,558	+		IAI47_08175	0.59	+1.3
1,724,559	-		IAI47_08175	0.59	+0.5
1,724,559	-		IAI47_08175	0.59	+0.9
1,724,562	+		IAI47_08175	0.60	+0.1
1,724,562	+		IAI47_08175	0.60	-0.1
1,724,562	+		IAI47_08175	0.60	-0.3
1,724,562	+		IAI47_08175	0.60	-0.1
1,724,562	+		IAI47_08175	0.60	-0.2
1,724,563	-		IAI47_08175	0.60	+0.7
1,724,563	-		IAI47_08175	0.60	+1.0
1,724,606	+		IAI47_08175	0.65	-0.4
1,724,606	+		IAI47_08175	0.65	+0.2
1,724,607	-		IAI47_08175	0.65	-0.1
1,724,607	-		IAI47_08175	0.65	+0.7
1,724,607	-		IAI47_08175	0.65	+0.3
1,724,607	-		IAI47_08175	0.65	+2.7
1,724,610	+		IAI47_08175	0.66	-0.5
1,724,610	+		IAI47_08175	0.66	-1.3
1,724,610	+		IAI47_08175	0.66	-1.6
1,724,610	+		IAI47_08175	0.66	-0.7
1,724,610	+		IAI47_08175	0.66	+1.0
1,724,610	+		IAI47_08175	0.66	-0.8
1,724,610	+		IAI47_08175	0.66	+0.1
1,724,610	+		IAI47_08175	0.66	+0.6
1,724,611	-		IAI47_08175	0.66	-0.1
1,724,611	-		IAI47_08175	0.66	+0.7
1,724,611	-		IAI47_08175	0.66	-1.6
1,724,611	-		IAI47_08175	0.66	+0.7
1,724,611	-		IAI47_08175	0.66	+0.4
1,724,611	-		IAI47_08175	0.66	-0.3
1,724,611	-		IAI47_08175	0.66	-0.3
1,724,611	-		IAI47_08175	0.66	-0.1
1,724,611	-		IAI47_08175	0.66	-0.0
1,724,611	-		IAI47_08175	0.66	-1.2
1,724,611	-		IAI47_08175	0.66	+1.1
1,724,632	-		IAI47_08175	0.68	-1.9
1,724,771	+		IAI47_08175	0.86	+0.2
1,724,771	+		IAI47_08175	0.86	-0.1
1,724,771	+		IAI47_08175	0.86	-0.8
1,724,771	+		IAI47_08175	0.86	-0.9
1,724,772	-		IAI47_08175	0.86	+1.1
1,724,772	-		IAI47_08175	0.86	+0.4
1,724,772	-		IAI47_08175	0.86	-1.0
1,724,772	-		IAI47_08175	0.86	+0.2
1,724,810	+				-0.8
1,724,810	+				+0.3
1,724,811	-				-0.1
1,724,819	+				-0.0
1,724,820	-				+0.9
1,724,883	+				+0.7
1,724,884	-				-0.0
1,724,928	+				-0.6
1,724,932	-				-0.3
1,724,932	-				+1.4
1,724,948	-				-0.6
1,724,998	+		IAI47_08180	0.17	-0.8
1,725,056	+		IAI47_08180	0.26	-0.9
1,725,056	+		IAI47_08180	0.26	-0.5
1,725,056	+		IAI47_08180	0.26	-1.0
1,725,056	+		IAI47_08180	0.26	-3.5
1,725,056	+		IAI47_08180	0.26	-0.5
1,725,057	-		IAI47_08180	0.26	+0.2
1,725,057	-		IAI47_08180	0.26	-0.2
1,725,057	-		IAI47_08180	0.26	-0.3
1,725,057	-		IAI47_08180	0.26	+0.5
1,725,057	-		IAI47_08180	0.26	-0.2
1,725,057	-		IAI47_08180	0.26	-0.6
1,725,057	-		IAI47_08180	0.26	-1.3
1,725,057	-		IAI47_08180	0.26	-0.1
1,725,057	-		IAI47_08180	0.26	+0.3
1,725,057	-		IAI47_08180	0.26	-0.8
1,725,057	-		IAI47_08180	0.26	-0.3
1,725,057	-		IAI47_08180	0.26	+0.7
1,725,100	+		IAI47_08180	0.32	-0.5
1,725,101	-		IAI47_08180	0.32	+1.1
1,725,101	-		IAI47_08180	0.32	+1.3
1,725,107	+		IAI47_08180	0.33	+0.9
1,725,107	+		IAI47_08180	0.33	+1.3
1,725,107	+		IAI47_08180	0.33	+1.1
1,725,107	+		IAI47_08180	0.33	+0.1
1,725,108	-		IAI47_08180	0.33	-0.3
1,725,108	-		IAI47_08180	0.33	-1.1
1,725,108	-		IAI47_08180	0.33	+0.9
1,725,108	-		IAI47_08180	0.33	+2.0
1,725,108	-		IAI47_08180	0.33	+0.7
1,725,108	-		IAI47_08180	0.33	+0.1
1,725,108	-		IAI47_08180	0.33	+0.0
1,725,108	-		IAI47_08180	0.33	-0.1
1,725,188	+		IAI47_08180	0.45	-1.9
1,725,257	-		IAI47_08180	0.56	-1.2
1,725,343	+		IAI47_08180	0.68	+0.7
1,725,344	-		IAI47_08180	0.69	-0.7
1,725,361	+		IAI47_08180	0.71	+0.7
1,725,361	+		IAI47_08180	0.71	-1.2
1,725,361	+		IAI47_08180	0.71	+0.6
1,725,361	+		IAI47_08180	0.71	-0.3
1,725,362	-		IAI47_08180	0.71	-1.0
1,725,362	-		IAI47_08180	0.71	+1.3
1,725,362	-		IAI47_08180	0.71	-0.9
1,725,449	+		IAI47_08180	0.84	+0.9
1,725,449	+		IAI47_08180	0.84	-0.0
1,725,449	+		IAI47_08180	0.84	+0.1
1,725,449	+		IAI47_08180	0.84	+0.7
1,725,449	+		IAI47_08180	0.84	+0.1
1,725,449	+		IAI47_08180	0.84	-0.2
1,725,449	+		IAI47_08180	0.84	-0.8
1,725,449	+		IAI47_08180	0.84	-0.1
1,725,449	+		IAI47_08180	0.84	-0.3
1,725,449	+		IAI47_08180	0.84	-0.3
1,725,450	-		IAI47_08180	0.84	-1.2
1,725,450	-		IAI47_08180	0.84	+0.1
1,725,450	-		IAI47_08180	0.84	-2.3
1,725,470	+		IAI47_08180	0.87	+1.7
1,725,471	-		IAI47_08180	0.88	-0.0
1,725,471	-		IAI47_08180	0.88	+0.1
1,725,471	-		IAI47_08180	0.88	+0.5
1,725,471	-		IAI47_08180	0.88	-0.5
1,725,471	-		IAI47_08180	0.88	-1.3
1,725,526	+				-0.3
1,725,526	+				+0.0
1,725,526	+				-0.1
1,725,526	+				-0.3
1,725,527	-				+0.9
1,725,527	-				+1.0
1,725,527	-				+0.3
1,725,527	-				+0.4
1,725,527	-				-0.1
1,725,672	+		IAI47_08185	0.16	-0.2
1,725,673	-		IAI47_08185	0.16	+0.7
1,725,693	+		IAI47_08185	0.19	-0.7
1,725,693	+		IAI47_08185	0.19	-0.9
1,725,693	+		IAI47_08185	0.19	-0.9
1,725,694	-		IAI47_08185	0.19	+0.2
1,725,694	-		IAI47_08185	0.19	+0.7
1,725,696	+		IAI47_08185	0.19	+0.3
1,725,697	-		IAI47_08185	0.20	+0.0
1,725,697	-		IAI47_08185	0.20	+0.2
1,725,744	+		IAI47_08185	0.26	-0.4
1,725,744	+		IAI47_08185	0.26	+1.7
1,725,744	+		IAI47_08185	0.26	-0.8
1,725,745	-		IAI47_08185	0.26	+1.2
1,725,745	-		IAI47_08185	0.26	-1.9
1,725,745	-		IAI47_08185	0.26	+1.2
1,725,867	+		IAI47_08185	0.42	-0.5
1,725,868	-		IAI47_08185	0.42	-0.0
1,725,868	-		IAI47_08185	0.42	-0.3
1,725,868	-		IAI47_08185	0.42	-0.5
1,725,914	+		IAI47_08185	0.48	+1.8
1,725,914	+		IAI47_08185	0.48	+1.4
1,725,957	+		IAI47_08185	0.54	+0.4
1,725,957	+		IAI47_08185	0.54	-0.5
1,726,088	+		IAI47_08185	0.71	+0.4
1,726,089	-		IAI47_08185	0.72	+1.1
1,726,089	-		IAI47_08185	0.72	+0.1
1,726,134	+		IAI47_08185	0.78	+1.6
1,726,144	-		IAI47_08185	0.79	+1.3
1,726,144	-		IAI47_08185	0.79	-1.5
1,726,212	+		IAI47_08185	0.88	-0.2
1,726,212	+		IAI47_08185	0.88	+2.7
1,726,212	+		IAI47_08185	0.88	+0.9
1,726,212	+		IAI47_08185	0.88	+0.0
1,726,212	+		IAI47_08185	0.88	+1.1
1,726,213	-		IAI47_08185	0.88	-0.5
1,726,213	-		IAI47_08185	0.88	-0.7
1,726,249	-				-0.2
1,726,301	-				-0.3
1,726,331	+				-1.0
1,726,400	+				-0.6
1,726,400	+				-1.5
1,726,400	+				-0.4
1,726,401	-				-0.3
1,726,401	-				+0.7
1,726,404	+				-0.0
1,726,405	-				-2.1
1,726,409	-				-1.9
1,726,466	-				+1.3
1,726,466	-				+0.3
1,726,466	-				+0.5
1,726,495	+				+1.3
1,726,495	+				-0.6
1,726,496	-				-0.9
1,726,526	+				-1.6
1,726,527	-				-0.4
1,726,553	+				-0.3