Strain Fitness in Pantoea sp. MT58 around IAI47_07605

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,608,983	-		IAI47_07600	0.41	-0.4
1,609,022	+		IAI47_07600	0.44	+0.6
1,609,022	+		IAI47_07600	0.44	-0.9
1,609,022	+		IAI47_07600	0.44	+0.2
1,609,022	+		IAI47_07600	0.44	+0.4
1,609,023	-		IAI47_07600	0.44	+0.4
1,609,023	-		IAI47_07600	0.44	-1.9
1,609,025	+		IAI47_07600	0.44	+0.8
1,609,025	+		IAI47_07600	0.44	-0.1
1,609,026	-		IAI47_07600	0.44	-0.7
1,609,026	-		IAI47_07600	0.44	-0.6
1,609,026	-		IAI47_07600	0.44	-0.3
1,609,026	-		IAI47_07600	0.44	+0.5
1,609,122	+		IAI47_07600	0.50	+0.0
1,609,122	+		IAI47_07600	0.50	+1.2
1,609,122	+		IAI47_07600	0.50	+0.1
1,609,122	+		IAI47_07600	0.50	-1.6
1,609,123	-		IAI47_07600	0.50	+0.9
1,609,123	-		IAI47_07600	0.50	-0.1
1,609,123	-		IAI47_07600	0.50	+0.1
1,609,123	-		IAI47_07600	0.50	+0.3
1,609,123	-		IAI47_07600	0.50	+1.5
1,609,205	+		IAI47_07600	0.55	+0.9
1,609,205	+		IAI47_07600	0.55	-0.7
1,609,205	+		IAI47_07600	0.55	+0.6
1,609,205	+		IAI47_07600	0.55	+1.1
1,609,205	+		IAI47_07600	0.55	-0.1
1,609,205	+		IAI47_07600	0.55	-0.2
1,609,205	+		IAI47_07600	0.55	-0.8
1,609,205	+		IAI47_07600	0.55	-0.1
1,609,205	+		IAI47_07600	0.55	-0.2
1,609,205	+		IAI47_07600	0.55	+1.0
1,609,205	+		IAI47_07600	0.55	+0.2
1,609,206	-		IAI47_07600	0.55	-0.3
1,609,206	-		IAI47_07600	0.55	+0.7
1,609,206	-		IAI47_07600	0.55	-0.1
1,609,206	-		IAI47_07600	0.55	-0.1
1,609,206	-		IAI47_07600	0.55	-0.1
1,609,206	-		IAI47_07600	0.55	+1.7
1,609,206	-		IAI47_07600	0.55	-0.1
1,609,206	-		IAI47_07600	0.55	-1.5
1,609,206	-		IAI47_07600	0.55	-0.7
1,609,206	-		IAI47_07600	0.55	-0.3
1,609,206	-		IAI47_07600	0.55	-1.0
1,609,206	-		IAI47_07600	0.55	-0.1
1,609,206	-		IAI47_07600	0.55	+0.2
1,609,206	-		IAI47_07600	0.55	-1.5
1,609,206	-		IAI47_07600	0.55	-0.7
1,609,206	-		IAI47_07600	0.55	-1.5
1,609,206	-		IAI47_07600	0.55	+0.1
1,609,206	-		IAI47_07600	0.55	-0.1
1,609,207	+		IAI47_07600	0.55	+0.7
1,609,208	-		IAI47_07600	0.55	+0.1
1,609,208	-		IAI47_07600	0.55	-0.0
1,609,234	+		IAI47_07600	0.57	+0.5
1,609,234	+		IAI47_07600	0.57	+0.2
1,609,243	+		IAI47_07600	0.57	+0.1
1,609,274	+		IAI47_07600	0.59	-1.5
1,609,275	-		IAI47_07600	0.59	+0.8
1,609,275	-		IAI47_07600	0.59	-0.4
1,609,308	+		IAI47_07600	0.61	+0.2
1,609,308	+		IAI47_07600	0.61	+1.1
1,609,320	-		IAI47_07600	0.62	-1.0
1,609,333	+		IAI47_07600	0.63	+1.3
1,609,334	-		IAI47_07600	0.63	-0.3
1,609,334	-		IAI47_07600	0.63	-0.3
1,609,334	-		IAI47_07600	0.63	+0.1
1,609,334	-		IAI47_07600	0.63	+0.7
1,609,367	+		IAI47_07600	0.65	-0.7
1,609,367	+		IAI47_07600	0.65	+1.2
1,609,368	-		IAI47_07600	0.65	+1.3
1,609,368	-		IAI47_07600	0.65	-0.4
1,609,368	-		IAI47_07600	0.65	+0.2
1,609,368	-		IAI47_07600	0.65	-0.3
1,609,420	+		IAI47_07600	0.68	+0.3
1,609,452	+		IAI47_07600	0.70	+0.4
1,609,452	+		IAI47_07600	0.70	+0.3
1,609,465	+		IAI47_07600	0.71	-0.4
1,609,465	+		IAI47_07600	0.71	+0.2
1,609,545	+		IAI47_07600	0.76	-0.9
1,609,545	+		IAI47_07600	0.76	+0.0
1,609,560	-		IAI47_07600	0.77	-0.9
1,609,560	-		IAI47_07600	0.77	+1.1
1,609,614	+		IAI47_07600	0.80	-0.1
1,609,636	+		IAI47_07600	0.82	-0.0
1,609,636	+		IAI47_07600	0.82	+0.5
1,609,637	-		IAI47_07600	0.82	-0.7
1,609,655	+		IAI47_07600	0.83	-0.3
1,609,655	+		IAI47_07600	0.83	-1.1
1,609,656	-		IAI47_07600	0.83	-0.6
1,609,656	-		IAI47_07600	0.83	+0.0
1,609,656	-		IAI47_07600	0.83	+1.3
1,609,664	-		IAI47_07600	0.84	+0.7
1,609,763	+		IAI47_07600	0.90	-0.0
1,609,763	+		IAI47_07600	0.90	-0.5
1,609,763	+		IAI47_07600	0.90	+0.1
1,609,764	-		IAI47_07600	0.90	+0.4
1,609,764	-		IAI47_07600	0.90	-0.4
1,609,764	-		IAI47_07600	0.90	+0.7
1,609,764	-		IAI47_07600	0.90	-0.3
1,609,764	-		IAI47_07600	0.90	+0.7
1,609,764	-		IAI47_07600	0.90	+0.3
1,609,764	-		IAI47_07600	0.90	+0.4
1,609,764	-		IAI47_07600	0.90	-0.0
1,609,764	-		IAI47_07600	0.90	-1.3
1,609,764	-		IAI47_07600	0.90	-0.3
1,609,764	-		IAI47_07600	0.90	-0.1
1,609,764	-		IAI47_07600	0.90	-0.8
1,609,787	+				+0.4
1,609,787	+				+1.1
1,609,787	+				-0.8
1,609,788	-				-0.3
1,609,807	+				-0.9
1,609,808	-				-0.6
1,609,819	+				+1.1
1,609,838	+				-0.7
1,609,838	+				+1.8
1,609,839	-				+0.6
1,609,839	-				+0.0
1,609,839	-				-1.4
1,609,839	-				-0.4
1,609,839	-				+1.5
1,609,839	-				+0.8
1,609,840	+				-0.9
1,609,840	+				+0.1
1,609,840	+				+0.9
1,609,840	+				-0.2
1,609,840	+				+1.6
1,609,841	-				+0.9
1,609,841	-				+2.0
1,609,841	-				+0.2
1,609,841	-				+0.1
1,609,852	+				-0.1
1,609,860	+				-1.0
1,609,892	+				-0.1
1,609,954	+				-0.0
1,609,955	-				+0.7
1,609,961	+				+0.5
1,609,961	+				-1.1
1,609,961	+				-0.1
1,609,961	+				-0.3
1,609,977	+				+0.2
1,609,977	+				-1.3
1,609,978	-				+0.1
1,609,978	-				-1.2
1,610,030	+				+0.1
1,610,172	+		IAI47_07605	0.21	+0.7
1,610,172	+		IAI47_07605	0.21	-0.1
1,610,172	+		IAI47_07605	0.21	-0.0
1,610,173	-		IAI47_07605	0.21	-2.8
1,610,173	-		IAI47_07605	0.21	+0.7
1,610,174	+		IAI47_07605	0.22	-0.0
1,610,174	+		IAI47_07605	0.22	-0.3
1,610,174	+		IAI47_07605	0.22	+0.2
1,610,175	-		IAI47_07605	0.22	-0.6
1,610,175	-		IAI47_07605	0.22	+0.5
1,610,262	-		IAI47_07605	0.31	+0.7
1,610,508	+		IAI47_07605	0.56	+0.1
1,610,508	+		IAI47_07605	0.56	+0.3
1,610,509	-		IAI47_07605	0.57	-0.3
1,610,520	+		IAI47_07605	0.58	+0.3
1,610,520	+		IAI47_07605	0.58	+0.1
1,610,521	-		IAI47_07605	0.58	+2.7
1,610,521	-		IAI47_07605	0.58	+0.4
1,610,591	+		IAI47_07605	0.65	+0.0
1,610,592	-		IAI47_07605	0.65	-1.9
1,610,613	+		IAI47_07605	0.67	-0.4
1,610,614	-		IAI47_07605	0.68	+0.6
1,610,614	-		IAI47_07605	0.68	-0.6
1,610,614	-		IAI47_07605	0.68	+0.3
1,610,614	-		IAI47_07605	0.68	-0.0
1,610,614	-		IAI47_07605	0.68	+0.8
1,610,724	+		IAI47_07605	0.79	+0.6
1,610,724	+		IAI47_07605	0.79	-0.2
1,610,724	+		IAI47_07605	0.79	+0.3
1,610,724	+		IAI47_07605	0.79	+0.6
1,610,725	-		IAI47_07605	0.79	+0.5
1,610,725	-		IAI47_07605	0.79	-0.8
1,610,725	-		IAI47_07605	0.79	-0.9
1,610,766	+		IAI47_07605	0.83	-0.4
1,610,767	-		IAI47_07605	0.83	+0.3
1,610,856	+				+1.2
1,610,856	+				-0.6
1,610,856	+				+0.7
1,610,856	+				+0.2
1,610,857	-				+0.3
1,610,857	-				-0.3
1,610,857	-				-0.8
1,610,900	+				+0.3
1,610,900	+				+1.0
1,610,926	+				-0.0
1,610,926	+				-1.3
1,610,927	-				-0.3
1,610,927	-				+0.3
1,611,019	-		IAI47_07610	0.12	-1.2
1,611,113	+		IAI47_07610	0.23	+0.8
1,611,113	+		IAI47_07610	0.23	-0.2
1,611,114	-		IAI47_07610	0.23	-1.4
1,611,140	-		IAI47_07610	0.26	-0.6
1,611,258	+		IAI47_07610	0.40	-0.6
1,611,375	-		IAI47_07610	0.53	-0.3
1,611,375	-		IAI47_07610	0.53	+0.1
1,611,424	+		IAI47_07610	0.59	-0.4
1,611,424	+		IAI47_07610	0.59	-0.4
1,611,424	+		IAI47_07610	0.59	+1.2
1,611,425	-		IAI47_07610	0.59	+1.2
1,611,425	-		IAI47_07610	0.59	-0.2
1,611,434	+		IAI47_07610	0.60	-1.9
1,611,434	+		IAI47_07610	0.60	-1.3
1,611,434	+		IAI47_07610	0.60	-0.3
1,611,435	-		IAI47_07610	0.60	-2.0
1,611,435	-		IAI47_07610	0.60	-0.3
1,611,435	-		IAI47_07610	0.60	-1.1
1,611,435	-		IAI47_07610	0.60	-0.7
1,611,473	+		IAI47_07610	0.65	-1.8
1,611,473	+		IAI47_07610	0.65	-0.1
1,611,473	+		IAI47_07610	0.65	-0.1
1,611,473	+		IAI47_07610	0.65	-0.3
1,611,473	+		IAI47_07610	0.65	-0.9
1,611,473	+		IAI47_07610	0.65	-0.3
1,611,474	-		IAI47_07610	0.65	-0.5
1,611,474	-		IAI47_07610	0.65	+0.2
1,611,474	-		IAI47_07610	0.65	+0.0
1,611,474	-		IAI47_07610	0.65	-0.4
1,611,475	+		IAI47_07610	0.65	-0.2
1,611,475	+		IAI47_07610	0.65	-0.5
1,611,475	+		IAI47_07610	0.65	+0.7
1,611,476	-		IAI47_07610	0.65	+2.0
1,611,500	-		IAI47_07610	0.68	+0.2
1,611,500	-		IAI47_07610	0.68	+1.0
1,611,545	+		IAI47_07610	0.73	+0.7
1,611,545	+		IAI47_07610	0.73	-0.1
1,611,545	+		IAI47_07610	0.73	+0.6
1,611,546	-		IAI47_07610	0.73	+0.2
1,611,546	-		IAI47_07610	0.73	-0.7
1,611,546	-		IAI47_07610	0.73	-1.6
1,611,546	-		IAI47_07610	0.73	-0.4
1,611,547	+		IAI47_07610	0.73	-0.5
1,611,602	+		IAI47_07610	0.80	-0.0
1,611,603	-		IAI47_07610	0.80	+1.0
1,611,603	-		IAI47_07610	0.80	-0.5
1,611,634	+		IAI47_07610	0.84	-0.0
1,611,634	+		IAI47_07610	0.84	+1.0
1,611,635	-		IAI47_07610	0.84	+1.9
1,611,645	+		IAI47_07610	0.85	+0.3
1,611,645	+		IAI47_07610	0.85	-0.7
1,611,786	+				-0.0
1,611,786	+				+0.1
1,611,787	-				-0.0
1,611,787	-				-0.7
1,611,787	-				-0.0
1,611,787	-				-0.2
1,611,787	-				-1.2
1,611,804	-				+0.7
1,611,804	-				-0.0
1,611,880	-				-0.7
1,611,911	+				+0.0