Strain Fitness in Pantoea sp. MT58 around IAI47_07000

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,474,906	-				+0.3
1,474,928	-				+1.0
1,474,940	-				-0.4
1,474,940	-				-1.0
1,474,943	+				-0.6
1,474,943	+				+1.2
1,474,943	+				-0.2
1,474,943	+				+0.4
1,474,943	+				-0.2
1,474,944	-				+0.5
1,474,944	-				-0.8
1,474,955	+				+1.5
1,474,963	+				-0.2
1,474,985	+				+1.5
1,474,985	+				+1.7
1,474,991	+				-0.7
1,474,991	+				-1.3
1,474,991	+				+0.0
1,474,991	+				+1.1
1,474,991	+				-0.3
1,474,991	+				-0.0
1,474,991	+				-0.5
1,474,991	+				-0.5
1,474,991	+				-1.9
1,474,991	+				+0.4
1,474,991	+				+1.9
1,474,992	-				+1.1
1,474,992	-				-1.3
1,474,992	-				-2.9
1,474,992	-				-1.3
1,474,992	-				+0.5
1,474,992	-				-1.5
1,474,992	-				-1.2
1,474,992	-				-0.0
1,475,006	+				-0.1
1,475,007	-				+0.7
1,475,058	+		IAI47_06995	0.13	+0.4
1,475,058	+		IAI47_06995	0.13	+0.7
1,475,058	+		IAI47_06995	0.13	-0.7
1,475,058	+		IAI47_06995	0.13	+0.2
1,475,059	-		IAI47_06995	0.13	-0.3
1,475,059	-		IAI47_06995	0.13	-1.1
1,475,059	-		IAI47_06995	0.13	+0.1
1,475,088	-		IAI47_06995	0.16	-0.0
1,475,088	-		IAI47_06995	0.16	+0.2
1,475,090	+		IAI47_06995	0.16	-0.1
1,475,091	-		IAI47_06995	0.16	+1.6
1,475,120	+		IAI47_06995	0.19	+1.7
1,475,120	+		IAI47_06995	0.19	+1.7
1,475,121	-		IAI47_06995	0.20	+1.6
1,475,131	+		IAI47_06995	0.21	-1.3
1,475,154	+		IAI47_06995	0.23	+0.7
1,475,154	+		IAI47_06995	0.23	+0.3
1,475,154	+		IAI47_06995	0.23	+0.9
1,475,155	-		IAI47_06995	0.23	-0.5
1,475,155	-		IAI47_06995	0.23	+0.3
1,475,197	+		IAI47_06995	0.28	+1.3
1,475,198	-		IAI47_06995	0.28	+0.9
1,475,216	+		IAI47_06995	0.30	+0.6
1,475,233	+		IAI47_06995	0.32	-0.5
1,475,312	+		IAI47_06995	0.41	+0.7
1,475,358	-		IAI47_06995	0.46	-0.3
1,475,358	-		IAI47_06995	0.46	+0.7
1,475,376	+		IAI47_06995	0.48	+1.2
1,475,376	+		IAI47_06995	0.48	-1.3
1,475,377	-		IAI47_06995	0.48	-0.2
1,475,377	-		IAI47_06995	0.48	+0.7
1,475,377	-		IAI47_06995	0.48	+1.0
1,475,377	-		IAI47_06995	0.48	+0.5
1,475,377	-		IAI47_06995	0.48	-0.9
1,475,377	-		IAI47_06995	0.48	+1.5
1,475,378	+		IAI47_06995	0.48	+0.7
1,475,378	+		IAI47_06995	0.48	+0.1
1,475,441	+		IAI47_06995	0.55	-0.0
1,475,441	+		IAI47_06995	0.55	-1.7
1,475,441	+		IAI47_06995	0.55	+0.2
1,475,442	-		IAI47_06995	0.55	-1.4
1,475,442	-		IAI47_06995	0.55	+0.7
1,475,442	-		IAI47_06995	0.55	+0.6
1,475,442	-		IAI47_06995	0.55	-0.1
1,475,466	+		IAI47_06995	0.58	-0.1
1,475,466	+		IAI47_06995	0.58	+0.6
1,475,466	+		IAI47_06995	0.58	+0.1
1,475,466	+		IAI47_06995	0.58	-0.6
1,475,549	+		IAI47_06995	0.67	-0.6
1,475,549	+		IAI47_06995	0.67	-1.7
1,475,549	+		IAI47_06995	0.67	+0.2
1,475,549	+		IAI47_06995	0.67	+1.2
1,475,589	+		IAI47_06995	0.71	+0.3
1,475,590	-		IAI47_06995	0.72	+0.1
1,475,590	-		IAI47_06995	0.72	-1.2
1,475,590	-		IAI47_06995	0.72	-0.1
1,475,604	+		IAI47_06995	0.73	-0.1
1,475,607	-		IAI47_06995	0.73	-0.9
1,475,607	-		IAI47_06995	0.73	+0.7
1,475,651	+		IAI47_06995	0.78	-0.1
1,475,651	+		IAI47_06995	0.78	+3.3
1,475,652	-		IAI47_06995	0.78	+0.7
1,475,652	-		IAI47_06995	0.78	+0.0
1,475,652	-		IAI47_06995	0.78	+0.9
1,475,652	-		IAI47_06995	0.78	+0.3
1,475,652	-		IAI47_06995	0.78	-0.3
1,475,652	-		IAI47_06995	0.78	-0.5
1,475,652	-		IAI47_06995	0.78	-0.6
1,475,751	+		IAI47_06995	0.89	+1.0
1,475,751	+		IAI47_06995	0.89	-0.3
1,475,751	+		IAI47_06995	0.89	+1.1
1,475,751	+		IAI47_06995	0.89	-2.4
1,475,751	+		IAI47_06995	0.89	-0.3
1,475,752	-		IAI47_06995	0.89	+0.4
1,475,752	-		IAI47_06995	0.89	+1.3
1,475,786	+				+0.9
1,475,786	+				-1.6
1,475,787	-				+0.7
1,475,787	-				+0.5
1,475,816	+				-1.6
1,475,844	+				+0.2
1,475,847	+				+0.1
1,475,848	-				+0.5
1,475,902	+				+1.0
1,475,919	+				+1.0
1,475,919	+				+2.0
1,475,919	+				-1.4
1,475,920	-				+0.0
1,475,920	-				+0.7
1,475,920	-				-0.8
1,475,920	-				+1.5
1,475,920	-				-0.1
1,475,921	+				+0.7
1,475,939	-				+0.3
1,476,138	-		IAI47_07000	0.25	+0.7
1,476,174	+		IAI47_07000	0.28	+0.7
1,476,175	-		IAI47_07000	0.28	+1.6
1,476,177	+		IAI47_07000	0.28	+0.5
1,476,190	+		IAI47_07000	0.30	-1.2
1,476,190	+		IAI47_07000	0.30	+0.4
1,476,190	+		IAI47_07000	0.30	+0.1
1,476,190	+		IAI47_07000	0.30	+0.1
1,476,270	+		IAI47_07000	0.38	-0.2
1,476,271	-		IAI47_07000	0.38	+0.7
1,476,294	+		IAI47_07000	0.40	-0.7
1,476,294	+		IAI47_07000	0.40	-0.0
1,476,295	-		IAI47_07000	0.40	-0.0
1,476,295	-		IAI47_07000	0.40	-0.5
1,476,344	+		IAI47_07000	0.45	+0.4
1,476,345	-		IAI47_07000	0.45	+0.7
1,476,345	-		IAI47_07000	0.45	+1.3
1,476,417	+		IAI47_07000	0.52	-0.4
1,476,417	+		IAI47_07000	0.52	+0.7
1,476,417	+		IAI47_07000	0.52	+0.9
1,476,417	+		IAI47_07000	0.52	+0.1
1,476,418	-		IAI47_07000	0.52	+0.0
1,476,495	+		IAI47_07000	0.60	-0.0
1,476,495	+		IAI47_07000	0.60	+1.0
1,476,495	+		IAI47_07000	0.60	+0.6
1,476,496	-		IAI47_07000	0.60	-1.0
1,476,496	-		IAI47_07000	0.60	-1.7
1,476,552	+		IAI47_07000	0.65	-0.9
1,476,552	+		IAI47_07000	0.65	-1.3
1,476,553	-		IAI47_07000	0.65	-0.5
1,476,553	-		IAI47_07000	0.65	+0.0
1,476,569	+		IAI47_07000	0.67	-0.1
1,476,569	+		IAI47_07000	0.67	+0.5
1,476,570	-		IAI47_07000	0.67	+0.5
1,476,585	+		IAI47_07000	0.69	-0.8
1,476,585	+		IAI47_07000	0.69	+0.9
1,476,585	+		IAI47_07000	0.69	+0.7
1,476,585	+		IAI47_07000	0.69	-1.3
1,476,585	+		IAI47_07000	0.69	+0.2
1,476,585	+		IAI47_07000	0.69	-0.0
1,476,585	+		IAI47_07000	0.69	+0.1
1,476,585	+		IAI47_07000	0.69	+0.2
1,476,585	+		IAI47_07000	0.69	+0.2
1,476,586	-		IAI47_07000	0.69	+0.2
1,476,586	-		IAI47_07000	0.69	+0.6
1,476,586	-		IAI47_07000	0.69	-0.5
1,476,586	-		IAI47_07000	0.69	+2.6
1,476,586	-		IAI47_07000	0.69	+1.0
1,476,586	-		IAI47_07000	0.69	+0.5
1,476,586	-		IAI47_07000	0.69	-0.3
1,476,586	-		IAI47_07000	0.69	-0.3
1,476,587	+		IAI47_07000	0.69	+0.4
1,476,587	+		IAI47_07000	0.69	+0.7
1,476,587	+		IAI47_07000	0.69	-1.2
1,476,588	-		IAI47_07000	0.69	-0.5
1,476,588	-		IAI47_07000	0.69	+0.7
1,476,598	+		IAI47_07000	0.70	+1.3
1,476,599	-		IAI47_07000	0.70	-0.1
1,476,655	-		IAI47_07000	0.76	+1.4
1,476,665	+		IAI47_07000	0.77	+0.3
1,476,694	+		IAI47_07000	0.79	-0.2
1,476,694	+		IAI47_07000	0.79	-0.0
1,476,731	+		IAI47_07000	0.83	+1.9
1,476,878	+				+0.1
1,476,879	-				+2.5
1,476,879	-				+0.7
1,476,908	+				+0.6
1,476,908	+				+0.1
1,476,908	+				+0.3
1,476,921	+				-0.7
1,476,922	-				-0.7
1,476,977	-				-0.4
1,476,977	-				-0.1
1,476,977	-				+0.1
1,476,977	-				-0.4
1,476,990	-				+0.5
1,476,994	+				-0.3
1,476,994	+				-1.3
1,476,995	-				-1.0
1,476,995	-				-0.4
1,476,995	-				-1.3
1,476,995	-				+0.1
1,476,995	-				+1.0
1,476,995	-				+0.3
1,476,998	+				+1.1
1,476,998	+				-0.3
1,476,999	-				+0.1
1,476,999	-				-0.9
1,476,999	-				+0.4
1,476,999	-				-0.2
1,477,035	+				-2.0
1,477,053	-				-1.1
1,477,062	-				+0.0
1,477,105	+				+0.0
1,477,116	+				+0.1
1,477,121	+				-0.3
1,477,121	+				-2.1
1,477,122	-				+0.2
1,477,122	-				+0.7
1,477,122	-				-1.0
1,477,122	-				+0.5
1,477,179	+				+0.1
1,477,244	+				+0.5
1,477,244	+				+0.7
1,477,244	+				+0.7
1,477,255	+				+0.7
1,477,313	-		IAI47_07005	0.12	+0.1
1,477,313	-		IAI47_07005	0.12	+0.1
1,477,439	+		IAI47_07005	0.23	-0.3
1,477,673	+		IAI47_07005	0.44	+0.1
1,477,695	+		IAI47_07005	0.46	+1.7
1,477,697	+		IAI47_07005	0.46	+0.1
1,477,697	+		IAI47_07005	0.46	+1.1
1,477,697	+		IAI47_07005	0.46	+3.3
1,477,698	-		IAI47_07005	0.46	+0.2
1,477,846	+		IAI47_07005	0.59	+2.7
1,477,846	+		IAI47_07005	0.59	+0.3