Strain Fitness in Pantoea sp. MT58 around IAI47_03965

Experiment: Ying_Nucleobase14 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03960 and IAI47_03965 overlap by 4 nucleotidesIAI47_03965 and IAI47_03970 overlap by 4 nucleotides IAI47_03960: IAI47_03960 - pitrilysin, at 825,771 to 828,662 _03960 IAI47_03965: IAI47_03965 - exodeoxyribonuclease V subunit beta, at 828,659 to 832,198 _03965 IAI47_03970: IAI47_03970 - exodeoxyribonuclease V subunit alpha, at 832,195 to 834,036 _03970 Position (kb) 828 829 830 831 832 833Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 827.688 kb on - strand, within IAI47_03960at 827.688 kb on - strand, within IAI47_03960at 827.688 kb on - strand, within IAI47_03960at 827.697 kb on + strand, within IAI47_03960at 827.781 kb on + strand, within IAI47_03960at 827.781 kb on + strand, within IAI47_03960at 827.781 kb on + strand, within IAI47_03960at 827.782 kb on - strand, within IAI47_03960at 827.782 kb on - strand, within IAI47_03960at 827.782 kb on - strand, within IAI47_03960at 827.782 kb on - strand, within IAI47_03960at 827.783 kb on + strand, within IAI47_03960at 827.783 kb on + strand, within IAI47_03960at 827.783 kb on + strand, within IAI47_03960at 827.783 kb on + strand, within IAI47_03960at 827.783 kb on + strand, within IAI47_03960at 827.784 kb on - strand, within IAI47_03960at 827.784 kb on - strand, within IAI47_03960at 827.784 kb on - strand, within IAI47_03960at 827.784 kb on - strand, within IAI47_03960at 827.836 kb on + strand, within IAI47_03960at 827.836 kb on + strand, within IAI47_03960at 827.836 kb on + strand, within IAI47_03960at 827.836 kb on + strand, within IAI47_03960at 827.836 kb on + strand, within IAI47_03960at 827.837 kb on - strand, within IAI47_03960at 827.837 kb on - strand, within IAI47_03960at 827.837 kb on - strand, within IAI47_03960at 827.837 kb on - strand, within IAI47_03960at 827.837 kb on - strand, within IAI47_03960at 827.837 kb on - strand, within IAI47_03960at 827.837 kb on - strand, within IAI47_03960at 827.837 kb on - strand, within IAI47_03960at 827.837 kb on - strand, within IAI47_03960at 827.837 kb on - strand, within IAI47_03960at 827.844 kb on + strand, within IAI47_03960at 827.895 kb on - strand, within IAI47_03960at 827.895 kb on - strand, within IAI47_03960at 827.895 kb on - strand, within IAI47_03960at 827.937 kb on - strand, within IAI47_03960at 827.937 kb on - strand, within IAI47_03960at 827.954 kb on + strand, within IAI47_03960at 827.954 kb on + strand, within IAI47_03960at 827.954 kb on + strand, within IAI47_03960at 827.954 kb on + strand, within IAI47_03960at 827.954 kb on + strand, within IAI47_03960at 827.954 kb on + strand, within IAI47_03960at 827.955 kb on - strand, within IAI47_03960at 827.955 kb on - strand, within IAI47_03960at 827.955 kb on - strand, within IAI47_03960at 827.982 kb on + strand, within IAI47_03960at 827.982 kb on + strand, within IAI47_03960at 827.982 kb on + strand, within IAI47_03960at 827.983 kb on - strand, within IAI47_03960at 827.983 kb on - strand, within IAI47_03960at 827.983 kb on - strand, within IAI47_03960at 827.983 kb on - strand, within IAI47_03960at 827.983 kb on - strand, within IAI47_03960at 827.983 kb on - strand, within IAI47_03960at 827.983 kb on - strand, within IAI47_03960at 827.983 kb on - strand, within IAI47_03960at 827.983 kb on - strand, within IAI47_03960at 828.060 kb on + strand, within IAI47_03960at 828.060 kb on + strand, within IAI47_03960at 828.060 kb on + strand, within IAI47_03960at 828.060 kb on + strand, within IAI47_03960at 828.060 kb on + strand, within IAI47_03960at 828.060 kb on + strand, within IAI47_03960at 828.060 kb on + strand, within IAI47_03960at 828.060 kb on + strand, within IAI47_03960at 828.060 kb on + strand, within IAI47_03960at 828.060 kb on + strand, within IAI47_03960at 828.060 kb on + strand, within IAI47_03960at 828.060 kb on + strand, within IAI47_03960at 828.061 kb on - strand, within IAI47_03960at 828.061 kb on - strand, within IAI47_03960at 828.061 kb on - strand, within IAI47_03960at 828.061 kb on - strand, within IAI47_03960at 828.061 kb on - strand, within IAI47_03960at 828.061 kb on - strand, within IAI47_03960at 828.084 kb on + strand, within IAI47_03960at 828.084 kb on + strand, within IAI47_03960at 828.085 kb on - strand, within IAI47_03960at 828.107 kb on + strand, within IAI47_03960at 828.107 kb on + strand, within IAI47_03960at 828.107 kb on + strand, within IAI47_03960at 828.107 kb on + strand, within IAI47_03960at 828.107 kb on + strand, within IAI47_03960at 828.108 kb on - strand, within IAI47_03960at 828.108 kb on - strand, within IAI47_03960at 828.108 kb on - strand, within IAI47_03960at 828.108 kb on - strand, within IAI47_03960at 828.138 kb on + strand, within IAI47_03960at 828.138 kb on + strand, within IAI47_03960at 828.138 kb on + strand, within IAI47_03960at 828.138 kb on + strand, within IAI47_03960at 828.138 kb on + strand, within IAI47_03960at 828.138 kb on + strand, within IAI47_03960at 828.139 kb on - strand, within IAI47_03960at 828.139 kb on - strand, within IAI47_03960at 828.139 kb on - strand, within IAI47_03960at 828.171 kb on + strand, within IAI47_03960at 828.236 kb on + strand, within IAI47_03960at 828.236 kb on + strand, within IAI47_03960at 828.236 kb on + strand, within IAI47_03960at 828.237 kb on - strand, within IAI47_03960at 828.237 kb on - strandat 828.237 kb on - strand, within IAI47_03960at 828.237 kb on - strand, within IAI47_03960at 828.237 kb on - strand, within IAI47_03960at 828.239 kb on + strand, within IAI47_03960at 828.239 kb on + strand, within IAI47_03960at 828.239 kb on + strand, within IAI47_03960at 828.239 kb on + strand, within IAI47_03960at 828.239 kb on + strand, within IAI47_03960at 828.239 kb on + strand, within IAI47_03960at 828.240 kb on - strand, within IAI47_03960at 828.240 kb on - strand, within IAI47_03960at 828.240 kb on - strand, within IAI47_03960at 828.240 kb on - strand, within IAI47_03960at 828.240 kb on - strand, within IAI47_03960at 828.240 kb on - strand, within IAI47_03960at 828.240 kb on - strand, within IAI47_03960at 828.240 kb on - strand, within IAI47_03960at 828.259 kb on + strand, within IAI47_03960at 828.270 kb on + strand, within IAI47_03960at 828.282 kb on + strand, within IAI47_03960at 828.283 kb on - strand, within IAI47_03960at 828.283 kb on - strand, within IAI47_03960at 828.283 kb on - strand, within IAI47_03960at 828.283 kb on - strand, within IAI47_03960at 828.337 kb on - strand, within IAI47_03960at 828.337 kb on - strand, within IAI47_03960at 828.402 kb on + strandat 828.403 kb on - strandat 828.404 kb on + strandat 828.404 kb on + strandat 828.404 kb on + strandat 828.405 kb on - strandat 828.405 kb on - strandat 828.437 kb on + strandat 828.438 kb on - strandat 828.669 kb on + strandat 832.194 kb on + strandat 832.194 kb on + strandat 832.194 kb on + strandat 832.194 kb on + strandat 832.194 kb on + strandat 832.194 kb on + strandat 832.195 kb on - strandat 832.195 kb on - strandat 832.229 kb on + strandat 832.514 kb on + strand, within IAI47_03970at 832.514 kb on + strand, within IAI47_03970at 832.514 kb on + strand, within IAI47_03970at 832.515 kb on - strand, within IAI47_03970at 832.515 kb on - strand, within IAI47_03970at 832.515 kb on - strand, within IAI47_03970at 832.529 kb on + strand, within IAI47_03970at 832.529 kb on + strand, within IAI47_03970at 832.529 kb on + strand, within IAI47_03970at 832.530 kb on - strand, within IAI47_03970at 832.530 kb on - strand, within IAI47_03970at 832.531 kb on + strand, within IAI47_03970at 832.531 kb on + strand, within IAI47_03970at 832.532 kb on - strand, within IAI47_03970at 832.532 kb on - strand, within IAI47_03970at 832.532 kb on - strand, within IAI47_03970at 832.532 kb on - strand, within IAI47_03970at 832.532 kb on - strand, within IAI47_03970at 832.532 kb on - strand, within IAI47_03970at 832.532 kb on - strand, within IAI47_03970at 832.532 kb on - strand, within IAI47_03970at 832.532 kb on - strand, within IAI47_03970at 832.532 kb on - strand, within IAI47_03970at 832.609 kb on - strand, within IAI47_03970at 832.633 kb on - strand, within IAI47_03970at 832.917 kb on + strand, within IAI47_03970at 832.918 kb on - strand, within IAI47_03970at 832.962 kb on - strand, within IAI47_03970at 832.967 kb on - strand, within IAI47_03970at 832.967 kb on - strand, within IAI47_03970at 833.140 kb on - strand, within IAI47_03970at 833.140 kb on - strand, within IAI47_03970at 833.165 kb on - strand, within IAI47_03970at 833.165 kb on - strand, within IAI47_03970

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2
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827,688 - IAI47_03960 0.66 +2.1
827,688 - IAI47_03960 0.66 +1.2
827,688 - IAI47_03960 0.66 +0.3
827,697 + IAI47_03960 0.67 +0.6
827,781 + IAI47_03960 0.70 -0.0
827,781 + IAI47_03960 0.70 +0.2
827,781 + IAI47_03960 0.70 +0.3
827,782 - IAI47_03960 0.70 +0.9
827,782 - IAI47_03960 0.70 -0.1
827,782 - IAI47_03960 0.70 -0.4
827,782 - IAI47_03960 0.70 +0.5
827,783 + IAI47_03960 0.70 -0.8
827,783 + IAI47_03960 0.70 +1.8
827,783 + IAI47_03960 0.70 +0.8
827,783 + IAI47_03960 0.70 +0.4
827,783 + IAI47_03960 0.70 +0.4
827,784 - IAI47_03960 0.70 +0.6
827,784 - IAI47_03960 0.70 +0.9
827,784 - IAI47_03960 0.70 +0.2
827,784 - IAI47_03960 0.70 +1.2
827,836 + IAI47_03960 0.71 +1.5
827,836 + IAI47_03960 0.71 +0.3
827,836 + IAI47_03960 0.71 +0.2
827,836 + IAI47_03960 0.71 +1.5
827,836 + IAI47_03960 0.71 +0.2
827,837 - IAI47_03960 0.71 +0.0
827,837 - IAI47_03960 0.71 +0.8
827,837 - IAI47_03960 0.71 -0.4
827,837 - IAI47_03960 0.71 -1.6
827,837 - IAI47_03960 0.71 +0.1
827,837 - IAI47_03960 0.71 -0.0
827,837 - IAI47_03960 0.71 -0.9
827,837 - IAI47_03960 0.71 -0.4
827,837 - IAI47_03960 0.71 +1.1
827,837 - IAI47_03960 0.71 +0.3
827,844 + IAI47_03960 0.72 +1.3
827,895 - IAI47_03960 0.73 +0.4
827,895 - IAI47_03960 0.73 -0.4
827,895 - IAI47_03960 0.73 +1.4
827,937 - IAI47_03960 0.75 -0.8
827,937 - IAI47_03960 0.75 -0.6
827,954 + IAI47_03960 0.75 +0.2
827,954 + IAI47_03960 0.75 +0.3
827,954 + IAI47_03960 0.75 -0.5
827,954 + IAI47_03960 0.75 +0.3
827,954 + IAI47_03960 0.75 +0.4
827,954 + IAI47_03960 0.75 -0.8
827,955 - IAI47_03960 0.76 -0.0
827,955 - IAI47_03960 0.76 +0.4
827,955 - IAI47_03960 0.76 +0.4
827,982 + IAI47_03960 0.76 +0.8
827,982 + IAI47_03960 0.76 -0.3
827,982 + IAI47_03960 0.76 +0.2
827,983 - IAI47_03960 0.76 -0.2
827,983 - IAI47_03960 0.76 -0.8
827,983 - IAI47_03960 0.76 -0.5
827,983 - IAI47_03960 0.76 +0.2
827,983 - IAI47_03960 0.76 +0.9
827,983 - IAI47_03960 0.76 +0.3
827,983 - IAI47_03960 0.76 -0.6
827,983 - IAI47_03960 0.76 +0.6
827,983 - IAI47_03960 0.76 -0.2
828,060 + IAI47_03960 0.79 +0.5
828,060 + IAI47_03960 0.79 +0.8
828,060 + IAI47_03960 0.79 +0.4
828,060 + IAI47_03960 0.79 -1.1
828,060 + IAI47_03960 0.79 -0.4
828,060 + IAI47_03960 0.79 +1.1
828,060 + IAI47_03960 0.79 -1.1
828,060 + IAI47_03960 0.79 -0.5
828,060 + IAI47_03960 0.79 +1.0
828,060 + IAI47_03960 0.79 -0.1
828,060 + IAI47_03960 0.79 +0.9
828,060 + IAI47_03960 0.79 -0.2
828,061 - IAI47_03960 0.79 -0.7
828,061 - IAI47_03960 0.79 +0.2
828,061 - IAI47_03960 0.79 +1.5
828,061 - IAI47_03960 0.79 -1.3
828,061 - IAI47_03960 0.79 +0.1
828,061 - IAI47_03960 0.79 +1.0
828,084 + IAI47_03960 0.80 +0.1
828,084 + IAI47_03960 0.80 -0.0
828,085 - IAI47_03960 0.80 +0.2
828,107 + IAI47_03960 0.81 -2.4
828,107 + IAI47_03960 0.81 -1.0
828,107 + IAI47_03960 0.81 -0.1
828,107 + IAI47_03960 0.81 +0.3
828,107 + IAI47_03960 0.81 +0.5
828,108 - IAI47_03960 0.81 +0.4
828,108 - IAI47_03960 0.81 -0.4
828,108 - IAI47_03960 0.81 +0.1
828,108 - IAI47_03960 0.81 -0.6
828,138 + IAI47_03960 0.82 -1.0
828,138 + IAI47_03960 0.82 -1.3
828,138 + IAI47_03960 0.82 -0.3
828,138 + IAI47_03960 0.82 -0.6
828,138 + IAI47_03960 0.82 -0.1
828,138 + IAI47_03960 0.82 +0.4
828,139 - IAI47_03960 0.82 +0.4
828,139 - IAI47_03960 0.82 +0.3
828,139 - IAI47_03960 0.82 -0.1
828,171 + IAI47_03960 0.83 -0.2
828,236 + IAI47_03960 0.85 -0.2
828,236 + IAI47_03960 0.85 -1.2
828,236 + IAI47_03960 0.85 +0.3
828,237 - IAI47_03960 0.85 -0.6
828,237 - +0.8
828,237 - IAI47_03960 0.85 +0.8
828,237 - IAI47_03960 0.85 +1.6
828,237 - IAI47_03960 0.85 -0.0
828,239 + IAI47_03960 0.85 -1.0
828,239 + IAI47_03960 0.85 +1.6
828,239 + IAI47_03960 0.85 +1.6
828,239 + IAI47_03960 0.85 +1.4
828,239 + IAI47_03960 0.85 +0.5
828,239 + IAI47_03960 0.85 +1.1
828,240 - IAI47_03960 0.85 +0.8
828,240 - IAI47_03960 0.85 -0.7
828,240 - IAI47_03960 0.85 +0.9
828,240 - IAI47_03960 0.85 +0.3
828,240 - IAI47_03960 0.85 +0.4
828,240 - IAI47_03960 0.85 +0.1
828,240 - IAI47_03960 0.85 -0.3
828,240 - IAI47_03960 0.85 -0.8
828,259 + IAI47_03960 0.86 +0.1
828,270 + IAI47_03960 0.86 +0.6
828,282 + IAI47_03960 0.87 -1.2
828,283 - IAI47_03960 0.87 -0.4
828,283 - IAI47_03960 0.87 -1.7
828,283 - IAI47_03960 0.87 +1.9
828,283 - IAI47_03960 0.87 +0.3
828,337 - IAI47_03960 0.89 +0.3
828,337 - IAI47_03960 0.89 +0.3
828,402 + +0.5
828,403 - -0.1
828,404 + -0.0
828,404 + -0.6
828,404 + +0.8
828,405 - +2.5
828,405 - -0.2
828,437 + +2.1
828,438 - -0.6
828,669 + +0.0
832,194 + -0.2
832,194 + +0.8
832,194 + -0.2
832,194 + -0.7
832,194 + +0.6
832,194 + +1.5
832,195 - -0.1
832,195 - +1.0
832,229 + -0.4
832,514 + IAI47_03970 0.17 -1.3
832,514 + IAI47_03970 0.17 -0.2
832,514 + IAI47_03970 0.17 +0.4
832,515 - IAI47_03970 0.17 +1.2
832,515 - IAI47_03970 0.17 -1.7
832,515 - IAI47_03970 0.17 -1.1
832,529 + IAI47_03970 0.18 +0.0
832,529 + IAI47_03970 0.18 -1.2
832,529 + IAI47_03970 0.18 -0.3
832,530 - IAI47_03970 0.18 -0.6
832,530 - IAI47_03970 0.18 -0.6
832,531 + IAI47_03970 0.18 -1.5
832,531 + IAI47_03970 0.18 -0.7
832,532 - IAI47_03970 0.18 -0.0
832,532 - IAI47_03970 0.18 -2.4
832,532 - IAI47_03970 0.18 +0.8
832,532 - IAI47_03970 0.18 -1.1
832,532 - IAI47_03970 0.18 +0.5
832,532 - IAI47_03970 0.18 +0.2
832,532 - IAI47_03970 0.18 -0.8
832,532 - IAI47_03970 0.18 +0.5
832,532 - IAI47_03970 0.18 +0.2
832,532 - IAI47_03970 0.18 -1.5
832,609 - IAI47_03970 0.22 -0.1
832,633 - IAI47_03970 0.24 -2.2
832,917 + IAI47_03970 0.39 -3.1
832,918 - IAI47_03970 0.39 -0.8
832,962 - IAI47_03970 0.42 +1.5
832,967 - IAI47_03970 0.42 -0.6
832,967 - IAI47_03970 0.42 -0.0
833,140 - IAI47_03970 0.51 -1.6
833,140 - IAI47_03970 0.51 -0.0
833,165 - IAI47_03970 0.53 +3.6
833,165 - IAI47_03970 0.53 +0.5

Or see this region's nucleotide sequence