Strain Fitness in Pantoea sp. MT58 around IAI47_21335

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
931	+		IAI47_21335	0.87	-1.2
931	+		IAI47_21335	0.87	-0.9
931	+		IAI47_21335	0.87	-2.3
931	+		IAI47_21335	0.87	-0.9
931	+		IAI47_21335	0.87	+0.1
932	-		IAI47_21335	0.87	-1.0
932	-		IAI47_21335	0.87	+0.9
1,040	+				+0.4
1,040	+				+1.6
1,040	+				+0.7
1,040	+				+0.4
1,111	+				+1.4
1,138	+				-0.1
1,138	+				-0.7
1,138	+				+0.5
1,139	-				+0.5
1,145	+				+0.5
1,145	+				+1.1
1,145	+				+0.1
1,146	-				-0.3
1,151	+				-1.9
1,151	+				-0.3
1,151	+				+1.4
1,151	+				+0.7
1,152	-				-0.1
1,152	-				+1.1
1,152	-				-0.1
1,152	-				-0.5
1,158	+				-0.7
1,159	-				-0.6
1,167	+				-0.1
1,182	-				+2.4
1,182	-				-0.5
1,182	-				+0.1
1,191	+				-1.0
1,191	+				-2.1
1,191	+				-0.5
1,191	+				+0.7
1,191	+				-0.3
1,191	+				+1.6
1,192	-				-0.6
1,192	-				+0.0
1,192	-				+1.5
1,192	-				+1.7
1,192	-				+0.6
1,192	-				+0.3
1,192	-				+0.7
1,192	-				+0.2
1,192	-				+0.3
1,192	-				-0.1
1,192	-				+1.1
1,201	+				+0.0
1,201	+				+0.9
1,202	-				+0.5
1,202	-				+1.1
1,202	-				-0.5
1,202	-				-1.7
1,202	-				+0.2
1,202	-				-0.3
1,205	-				-0.5
1,205	-				-1.2
1,205	-				+0.7
1,236	+				-2.2
1,237	-				+0.6
1,237	-				+0.1
1,277	+				+2.1
1,286	+				+1.1
1,286	+				-0.8
1,297	+				+0.9
1,297	+				-0.8
1,297	+				-1.9
1,297	+				-0.5
1,297	+				+1.1
1,297	+				-0.5
1,297	+				-0.9
1,297	+				+2.4
1,297	+				-0.9
1,297	+				+1.0
1,297	+				+1.4
1,298	-				-0.5
1,298	-				+0.3
1,298	-				-1.1
1,298	-				+0.2
1,298	-				+0.4
1,298	-				-0.9
1,298	-				+0.7
1,298	-				-0.1
1,299	+				-0.2
1,300	-				-0.1
1,314	+				+0.5
1,314	+				+1.1
1,322	+				-0.1
1,323	-				+1.1
1,351	+				+1.5
1,352	-				+0.3
1,352	-				-0.8
1,362	+				+1.0
1,362	+				+0.5
1,362	+				+0.6
1,363	-				+1.5
1,371	+				+0.3
1,372	-				+0.3
1,372	-				-0.3
1,372	-				+1.5
1,372	-				+1.1
1,374	+				-1.3
1,374	+				-0.7
1,374	+				+0.7
1,374	+				-0.3
1,374	+				+0.4
1,374	+				+0.7
1,374	+				-0.1
1,375	-				+1.9
1,375	-				-0.7
1,375	-				-0.5
1,375	-				-1.1
1,375	-				+0.5
1,375	-				+0.7
1,405	+				+1.3
1,446	+				-0.3
1,447	-				-1.7
1,451	+				+0.2
1,458	+				-0.7
1,458	+				+0.9
1,459	-				-0.1
1,467	+				-0.6
1,467	+				+0.1
1,468	-				+0.1
1,468	-				+0.4
1,488	+				+1.1
1,488	+				-0.5
1,488	+				-0.5
1,489	-				+1.1
1,489	-				+0.3
1,489	-				+0.1
1,489	-				+1.1
1,489	-				-0.7
1,525	+				+0.8
1,532	+				+0.0
1,532	+				-1.7
1,533	-				-2.1
1,533	-				+0.8
1,533	-				+0.7
1,535	-				-0.3
1,535	-				+0.3
1,535	-				+0.7
1,535	-				+0.4
1,541	+				+0.2
1,541	+				+1.1
1,542	-				-0.6
1,573	+				-2.2
1,573	+				-0.5
1,573	+				+0.0
1,574	-				+1.6
1,584	+				+0.1
1,584	+				+1.1
1,584	+				-0.2
1,584	+				+1.7
1,585	-				+0.2
1,585	-				+0.4
1,598	-				+1.3
1,615	-				+0.8
1,626	+				-0.6
1,627	-				-0.5
1,627	-				+0.8
1,627	-				-0.9
1,646	+				+0.8
1,646	+				+1.9
1,651	+				-0.1
1,652	-				-1.7
1,670	+				+1.1
1,670	+				+0.1
1,671	-				-0.5
1,671	-				-0.7
1,671	-				-0.1
1,671	-				+0.1
1,671	-				-0.9
1,686	+				-0.1
1,687	-				-2.1
1,710	+				-0.4
1,734	-				+0.5
1,748	+				+0.4
1,801	-				+0.2
1,812	+				-0.2
1,813	-				-0.5
1,818	+				+0.7
1,818	+				-0.9
1,819	-				-0.4
1,819	-				-0.5
1,852	+				+1.5
1,853	-				+1.4
1,863	+				+0.5
1,863	+				+0.5
1,863	+				-0.6
1,864	-				-0.7
1,864	-				+1.5
1,864	-				-0.9
1,877	+				+0.3
1,877	+				-0.8
1,878	-				+1.5
1,926	-				+1.4
1,927	-				-1.4
1,948	+				+0.7
1,948	+				+2.7
1,948	+				+0.1
1,949	-				+0.1
1,955	+				-0.3
1,955	+				-0.9
1,955	+				-1.5
1,955	+				-1.5
1,955	+				+2.7
1,955	+				+0.5
1,956	-				-0.5
1,964	+				+2.4
1,976	-				-0.8
1,976	-				-0.5
2,005	+				-0.4
2,005	+				-0.5
2,006	-				-0.5
2,006	-				-0.9
2,047	+				-0.1
2,047	+				+1.4
2,047	+				+0.5
2,047	+				+2.1
2,048	-				+0.4
2,054	+				+1.1
2,054	+				-1.2
2,055	-				+0.8
2,055	-				+2.0
2,055	-				-0.5
2,055	-				+0.3
2,056	+				+0.2
2,056	+				+1.1
2,056	+				+0.4
2,056	+				+0.5
2,056	+				+0.1
2,057	-				-0.9
2,057	-				+0.1