Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20695 and IAI47_20700 are separated by 9 nucleotides IAI47_20700 and IAI47_20705 are separated by 2 nucleotides IAI47_20705 and IAI47_20710 overlap by 17 nucleotides IAI47_20710 and IAI47_20715 are separated by 392 nucleotides IAI47_20715 and IAI47_20720 are separated by 16 nucleotides
IAI47_20695: IAI47_20695 - HesA/MoeB/ThiF family protein, at 387,875 to 388,843
_20695
IAI47_20700: IAI47_20700 - thiazole synthase, at 388,853 to 389,608
_20700
IAI47_20705: IAI47_20705 - sulfur carrier protein ThiS, at 389,611 to 389,808
_20705
IAI47_20710: IAI47_20710 - FAD-dependent oxidoreductase, at 389,792 to 390,736
_20710
IAI47_20715: IAI47_20715 - helix-turn-helix transcriptional regulator, at 391,129 to 391,443
_20715
IAI47_20720: IAI47_20720 - alkene reductase, at 391,460 to 392,578
_20720
Position (kb) 389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 388.898 kb on - strand at 388.898 kb on - strand at 388.898 kb on - strand at 388.898 kb on - strand at 389.081 kb on - strand, within IAI47_20700 at 389.098 kb on + strand, within IAI47_20700 at 389.099 kb on - strand, within IAI47_20700 at 389.131 kb on + strand, within IAI47_20700 at 389.233 kb on + strand, within IAI47_20700 at 389.233 kb on + strand, within IAI47_20700 at 389.235 kb on + strand, within IAI47_20700 at 389.236 kb on - strand, within IAI47_20700 at 389.415 kb on + strand, within IAI47_20700 at 389.416 kb on + strand, within IAI47_20700 at 389.416 kb on + strand, within IAI47_20700 at 389.416 kb on + strand, within IAI47_20700 at 389.450 kb on + strand, within IAI47_20700 at 389.450 kb on + strand, within IAI47_20700 at 389.450 kb on + strand, within IAI47_20700 at 389.500 kb on + strand, within IAI47_20700 at 389.500 kb on + strand, within IAI47_20700 at 389.556 kb on + strand at 389.567 kb on - strand at 389.601 kb on + strand at 389.612 kb on + strand at 389.613 kb on - strand at 389.676 kb on - strand, within IAI47_20705 at 389.793 kb on + strand at 389.794 kb on - strand at 389.881 kb on - strand at 389.940 kb on + strand, within IAI47_20710 at 389.940 kb on + strand, within IAI47_20710 at 389.940 kb on + strand, within IAI47_20710 at 389.940 kb on + strand, within IAI47_20710 at 389.940 kb on + strand, within IAI47_20710 at 390.006 kb on + strand, within IAI47_20710 at 390.006 kb on + strand, within IAI47_20710 at 390.006 kb on + strand, within IAI47_20710 at 390.007 kb on - strand, within IAI47_20710 at 390.007 kb on - strand, within IAI47_20710 at 390.007 kb on - strand, within IAI47_20710 at 390.018 kb on - strand, within IAI47_20710 at 390.018 kb on - strand, within IAI47_20710 at 390.018 kb on - strand, within IAI47_20710 at 390.117 kb on + strand, within IAI47_20710 at 390.118 kb on - strand, within IAI47_20710 at 390.118 kb on - strand, within IAI47_20710 at 390.201 kb on - strand, within IAI47_20710 at 390.280 kb on + strand, within IAI47_20710 at 390.281 kb on + strand, within IAI47_20710 at 390.281 kb on + strand, within IAI47_20710 at 390.282 kb on - strand, within IAI47_20710 at 390.282 kb on - strand, within IAI47_20710 at 390.302 kb on + strand, within IAI47_20710 at 390.302 kb on + strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.303 kb on - strand, within IAI47_20710 at 390.363 kb on + strand, within IAI47_20710 at 390.363 kb on + strand, within IAI47_20710 at 390.364 kb on - strand, within IAI47_20710 at 390.467 kb on - strand, within IAI47_20710 at 390.494 kb on - strand, within IAI47_20710 at 390.776 kb on + strand at 390.777 kb on - strand at 390.777 kb on - strand at 390.777 kb on - strand at 390.777 kb on - strand at 390.777 kb on - strand at 390.795 kb on + strand at 390.795 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.797 kb on + strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.798 kb on - strand at 390.865 kb on + strand at 390.865 kb on + strand at 390.865 kb on + strand at 390.865 kb on + strand at 390.866 kb on - strand at 390.866 kb on - strand at 390.889 kb on + strand at 390.890 kb on - strand at 390.890 kb on - strand at 390.890 kb on - strand at 390.897 kb on + strand at 390.897 kb on + strand at 390.897 kb on + strand at 390.898 kb on - strand at 390.916 kb on + strand at 390.916 kb on + strand at 390.916 kb on + strand at 390.916 kb on + strand at 390.916 kb on + strand at 390.917 kb on - strand at 390.917 kb on - strand at 390.917 kb on - strand at 390.917 kb on - strand at 390.927 kb on - strand at 390.943 kb on + strand at 390.946 kb on + strand at 390.947 kb on - strand at 390.986 kb on + strand at 390.987 kb on - strand at 390.992 kb on + strand at 390.993 kb on - strand at 390.993 kb on - strand at 391.036 kb on + strand at 391.037 kb on - strand at 391.089 kb on + strand at 391.095 kb on + strand at 391.095 kb on + strand at 391.095 kb on + strand at 391.096 kb on - strand at 391.115 kb on - strand at 391.131 kb on - strand at 391.176 kb on + strand, within IAI47_20715 at 391.176 kb on + strand, within IAI47_20715 at 391.177 kb on - strand, within IAI47_20715 at 391.197 kb on - strand, within IAI47_20715 at 391.197 kb on - strand, within IAI47_20715 at 391.199 kb on + strand, within IAI47_20715 at 391.199 kb on + strand, within IAI47_20715 at 391.199 kb on + strand at 391.199 kb on + strand, within IAI47_20715 at 391.199 kb on + strand, within IAI47_20715 at 391.199 kb on + strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.200 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.283 kb on - strand, within IAI47_20715 at 391.301 kb on - strand, within IAI47_20715 at 391.301 kb on - strand, within IAI47_20715 at 391.322 kb on + strand, within IAI47_20715 at 391.323 kb on - strand, within IAI47_20715 at 391.323 kb on - strand, within IAI47_20715 at 391.323 kb on - strand, within IAI47_20715 at 391.323 kb on - strand, within IAI47_20715 at 391.338 kb on - strand, within IAI47_20715 at 391.347 kb on + strand, within IAI47_20715 at 391.348 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.378 kb on - strand, within IAI47_20715 at 391.418 kb on - strand at 391.418 kb on - strand at 391.459 kb on - strand at 391.480 kb on - strand at 391.485 kb on + strand at 391.486 kb on + strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.487 kb on - strand at 391.488 kb on + strand at 391.489 kb on - strand at 391.489 kb on - strand at 391.489 kb on - strand at 391.509 kb on + strand at 391.552 kb on + strand at 391.552 kb on + strand at 391.553 kb on - strand at 391.583 kb on - strand, within IAI47_20720 at 391.628 kb on + strand, within IAI47_20720 at 391.629 kb on - strand, within IAI47_20720 at 391.629 kb on - strand, within IAI47_20720 at 391.629 kb on - strand, within IAI47_20720 at 391.629 kb on - strand, within IAI47_20720 at 391.653 kb on + strand, within IAI47_20720 at 391.653 kb on + strand, within IAI47_20720 at 391.665 kb on + strand, within IAI47_20720 at 391.665 kb on + strand, within IAI47_20720 at 391.665 kb on + strand, within IAI47_20720 at 391.666 kb on - strand, within IAI47_20720 at 391.666 kb on - strand, within IAI47_20720 at 391.666 kb on - strand, within IAI47_20720 at 391.666 kb on - strand, within IAI47_20720 at 391.729 kb on + strand, within IAI47_20720 at 391.729 kb on + strand, within IAI47_20720 at 391.729 kb on + strand, within IAI47_20720 at 391.730 kb on - strand, within IAI47_20720 at 391.730 kb on - strand, within IAI47_20720 at 391.730 kb on - strand, within IAI47_20720 at 391.732 kb on + strand, within IAI47_20720 at 391.733 kb on - strand, within IAI47_20720
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 388,898 - +0.4 388,898 - +1.5 388,898 - -0.2 388,898 - -3.1 389,081 - IAI47_20700 0.30 -0.4 389,098 + IAI47_20700 0.32 -2.1 389,099 - IAI47_20700 0.33 -1.2 389,131 + IAI47_20700 0.37 -1.3 389,233 + IAI47_20700 0.50 -1.1 389,233 + IAI47_20700 0.50 -1.0 389,235 + IAI47_20700 0.51 +0.5 389,236 - IAI47_20700 0.51 -2.4 389,415 + IAI47_20700 0.74 -2.3 389,416 + IAI47_20700 0.74 +0.9 389,416 + IAI47_20700 0.74 -0.3 389,416 + IAI47_20700 0.74 -2.0 389,450 + IAI47_20700 0.79 -0.8 389,450 + IAI47_20700 0.79 -2.9 389,450 + IAI47_20700 0.79 -0.9 389,500 + IAI47_20700 0.86 -0.1 389,500 + IAI47_20700 0.86 +0.9 389,556 + -0.9 389,567 - +0.0 389,601 + +0.3 389,612 + -1.1 389,613 - +0.3 389,676 - IAI47_20705 0.33 -1.3 389,793 + -0.9 389,794 - -1.5 389,881 - -0.4 389,940 + IAI47_20710 0.16 -1.6 389,940 + IAI47_20710 0.16 -0.6 389,940 + IAI47_20710 0.16 -0.6 389,940 + IAI47_20710 0.16 -0.1 389,940 + IAI47_20710 0.16 -1.3 390,006 + IAI47_20710 0.23 -2.1 390,006 + IAI47_20710 0.23 -1.5 390,006 + IAI47_20710 0.23 -0.8 390,007 - IAI47_20710 0.23 -1.1 390,007 - IAI47_20710 0.23 -1.6 390,007 - IAI47_20710 0.23 -0.8 390,018 - IAI47_20710 0.24 -1.3 390,018 - IAI47_20710 0.24 -0.4 390,018 - IAI47_20710 0.24 +0.2 390,117 + IAI47_20710 0.34 -1.0 390,118 - IAI47_20710 0.34 -1.5 390,118 - IAI47_20710 0.34 +1.9 390,201 - IAI47_20710 0.43 -2.3 390,280 + IAI47_20710 0.52 -3.3 390,281 + IAI47_20710 0.52 -0.6 390,281 + IAI47_20710 0.52 -1.3 390,282 - IAI47_20710 0.52 -0.4 390,282 - IAI47_20710 0.52 -1.4 390,302 + IAI47_20710 0.54 -1.0 390,302 + IAI47_20710 0.54 +0.4 390,303 - IAI47_20710 0.54 +0.9 390,303 - IAI47_20710 0.54 -0.1 390,303 - IAI47_20710 0.54 +0.5 390,303 - IAI47_20710 0.54 -1.5 390,303 - IAI47_20710 0.54 -1.0 390,363 + IAI47_20710 0.60 -1.2 390,363 + IAI47_20710 0.60 -1.1 390,364 - IAI47_20710 0.61 -2.1 390,467 - IAI47_20710 0.71 +0.5 390,494 - IAI47_20710 0.74 -1.1 390,776 + -0.3 390,777 - -0.1 390,777 - -1.2 390,777 - -0.8 390,777 - -0.6 390,777 - -1.1 390,795 + -2.2 390,795 + -2.1 390,797 + -0.1 390,797 + +0.3 390,797 + -2.4 390,797 + -1.2 390,797 + -1.1 390,797 + -1.6 390,797 + +0.9 390,798 - -0.1 390,798 - -1.3 390,798 - -0.4 390,798 - +0.6 390,798 - -0.1 390,798 - +0.9 390,798 - -0.5 390,865 + -1.7 390,865 + -0.1 390,865 + -0.1 390,865 + -1.4 390,866 - -0.1 390,866 - -2.8 390,889 + +0.9 390,890 - -1.3 390,890 - +0.9 390,890 - -0.7 390,897 + -0.4 390,897 + -0.3 390,897 + -1.3 390,898 - -1.1 390,916 + +0.2 390,916 + +0.0 390,916 + -1.7 390,916 + -1.3 390,916 + -1.4 390,917 - +0.5 390,917 - +0.2 390,917 - -0.7 390,917 - +0.4 390,927 - -0.8 390,943 + +0.9 390,946 + -1.1 390,947 - +0.9 390,986 + -1.9 390,987 - -1.4 390,992 + -1.9 390,993 - +0.6 390,993 - -2.4 391,036 + -0.4 391,037 - -0.5 391,089 + -1.4 391,095 + +1.5 391,095 + -0.7 391,095 + +0.5 391,096 - -0.3 391,115 - +0.2 391,131 - +0.5 391,176 + IAI47_20715 0.15 +0.9 391,176 + IAI47_20715 0.15 +0.3 391,177 - IAI47_20715 0.15 -0.4 391,197 - IAI47_20715 0.22 +0.1 391,197 - IAI47_20715 0.22 +0.6 391,199 + IAI47_20715 0.22 +0.5 391,199 + IAI47_20715 0.22 -0.6 391,199 + -1.0 391,199 + IAI47_20715 0.22 +0.5 391,199 + IAI47_20715 0.22 +1.9 391,199 + IAI47_20715 0.22 -0.3 391,200 - IAI47_20715 0.23 +0.1 391,200 - IAI47_20715 0.23 -0.4 391,200 - IAI47_20715 0.23 -0.1 391,200 - IAI47_20715 0.23 +0.9 391,200 - IAI47_20715 0.23 +0.1 391,200 - IAI47_20715 0.23 -0.4 391,200 - IAI47_20715 0.23 -0.3 391,200 - IAI47_20715 0.23 +0.0 391,200 - IAI47_20715 0.23 -0.3 391,200 - IAI47_20715 0.23 -0.7 391,200 - IAI47_20715 0.23 +1.5 391,200 - IAI47_20715 0.23 -0.8 391,200 - IAI47_20715 0.23 -0.3 391,283 - IAI47_20715 0.49 -0.6 391,283 - IAI47_20715 0.49 +1.3 391,283 - IAI47_20715 0.49 +0.5 391,283 - IAI47_20715 0.49 -0.4 391,283 - IAI47_20715 0.49 -0.4 391,301 - IAI47_20715 0.55 -1.2 391,301 - IAI47_20715 0.55 +0.5 391,322 + IAI47_20715 0.61 -0.2 391,323 - IAI47_20715 0.62 +0.9 391,323 - IAI47_20715 0.62 +0.7 391,323 - IAI47_20715 0.62 +0.7 391,323 - IAI47_20715 0.62 -0.8 391,338 - IAI47_20715 0.66 -0.2 391,347 + IAI47_20715 0.69 +0.5 391,348 - IAI47_20715 0.70 +0.9 391,378 - IAI47_20715 0.79 +2.1 391,378 - IAI47_20715 0.79 -0.0 391,378 - IAI47_20715 0.79 -0.3 391,378 - IAI47_20715 0.79 -0.9 391,378 - IAI47_20715 0.79 +0.9 391,378 - IAI47_20715 0.79 +0.2 391,418 - +0.1 391,418 - -0.6 391,459 - +0.1 391,480 - +1.2 391,485 + +1.5 391,486 + +1.6 391,487 - +0.3 391,487 - +1.4 391,487 - -0.1 391,487 - -0.5 391,487 - +0.5 391,487 - -2.3 391,487 - +0.5 391,488 + +1.0 391,489 - +0.9 391,489 - -0.6 391,489 - +2.2 391,509 + +0.7 391,552 + -0.1 391,552 + -0.9 391,553 - +1.4 391,583 - IAI47_20720 0.11 -1.8 391,628 + IAI47_20720 0.15 +0.6 391,629 - IAI47_20720 0.15 +1.2 391,629 - IAI47_20720 0.15 -0.5 391,629 - IAI47_20720 0.15 -0.1 391,629 - IAI47_20720 0.15 -0.5 391,653 + IAI47_20720 0.17 -0.8 391,653 + IAI47_20720 0.17 +0.5 391,665 + IAI47_20720 0.18 -0.1 391,665 + IAI47_20720 0.18 -0.4 391,665 + IAI47_20720 0.18 -0.4 391,666 - IAI47_20720 0.18 +0.8 391,666 - IAI47_20720 0.18 -0.3 391,666 - IAI47_20720 0.18 -0.4 391,666 - IAI47_20720 0.18 +2.2 391,729 + IAI47_20720 0.24 -0.2 391,729 + IAI47_20720 0.24 -0.6 391,729 + IAI47_20720 0.24 -0.1 391,730 - IAI47_20720 0.24 +1.2 391,730 - IAI47_20720 0.24 -0.5 391,730 - IAI47_20720 0.24 +0.9 391,732 + IAI47_20720 0.24 +0.2 391,733 - IAI47_20720 0.24 -0.5
Or see this region's nucleotide sequence