Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19385 and IAI47_19390 overlap by 4 nucleotides IAI47_19390 and IAI47_19395 overlap by 4 nucleotides
IAI47_19385: IAI47_19385 - (2Fe-2S)-binding protein, at 103,125 to 103,589
_19385
IAI47_19390: IAI47_19390 - xanthine dehydrogenase family protein subunit M, at 103,586 to 104,578
_19390
IAI47_19395: IAI47_19395 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 104,575 to 106,884
_19395
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 102.593 kb on + strand at 102.607 kb on + strand at 102.607 kb on + strand at 102.607 kb on + strand at 102.608 kb on - strand at 102.612 kb on + strand at 102.612 kb on + strand at 102.612 kb on + strand at 102.613 kb on - strand at 102.613 kb on - strand at 102.705 kb on + strand at 102.706 kb on - strand at 102.706 kb on - strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.711 kb on - strand at 102.711 kb on - strand at 102.711 kb on - strand at 102.724 kb on + strand at 102.725 kb on - strand at 102.725 kb on - strand at 102.747 kb on + strand at 102.747 kb on + strand at 102.784 kb on + strand at 102.802 kb on - strand at 102.837 kb on + strand at 102.837 kb on + strand at 102.838 kb on - strand at 102.838 kb on - strand at 102.838 kb on - strand at 102.838 kb on - strand at 102.887 kb on + strand at 102.933 kb on - strand at 102.945 kb on + strand at 102.979 kb on + strand at 102.997 kb on + strand at 102.997 kb on + strand at 102.997 kb on + strand at 102.997 kb on + strand at 102.998 kb on - strand at 102.998 kb on - strand at 102.998 kb on - strand at 103.005 kb on + strand at 103.005 kb on + strand at 103.019 kb on - strand at 103.055 kb on + strand at 103.056 kb on - strand at 103.076 kb on - strand at 103.114 kb on + strand at 103.114 kb on + strand at 103.114 kb on + strand at 103.115 kb on - strand at 103.115 kb on - strand at 103.120 kb on + strand at 103.121 kb on - strand at 103.203 kb on - strand, within IAI47_19385 at 103.214 kb on + strand, within IAI47_19385 at 103.385 kb on + strand, within IAI47_19385 at 103.413 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.434 kb on - strand, within IAI47_19385 at 103.452 kb on - strand, within IAI47_19385 at 103.452 kb on - strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.640 kb on - strand at 103.726 kb on - strand, within IAI47_19390 at 103.726 kb on - strand, within IAI47_19390 at 103.743 kb on + strand, within IAI47_19390 at 103.743 kb on + strand, within IAI47_19390 at 103.753 kb on + strand, within IAI47_19390 at 103.778 kb on - strand, within IAI47_19390 at 103.856 kb on + strand, within IAI47_19390 at 103.894 kb on + strand, within IAI47_19390 at 103.895 kb on - strand, within IAI47_19390 at 103.895 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.920 kb on + strand, within IAI47_19390 at 103.920 kb on + strand, within IAI47_19390 at 103.930 kb on + strand, within IAI47_19390 at 103.944 kb on - strand, within IAI47_19390 at 103.946 kb on + strand, within IAI47_19390 at 103.966 kb on + strand, within IAI47_19390 at 103.967 kb on - strand, within IAI47_19390 at 103.976 kb on - strand, within IAI47_19390 at 104.225 kb on - strand, within IAI47_19390 at 104.273 kb on + strand, within IAI47_19390 at 104.274 kb on - strand, within IAI47_19390 at 104.278 kb on + strand, within IAI47_19390 at 104.301 kb on - strand, within IAI47_19390 at 104.301 kb on - strand, within IAI47_19390 at 104.301 kb on - strand, within IAI47_19390 at 104.368 kb on + strand, within IAI47_19390 at 104.443 kb on + strand, within IAI47_19390 at 104.444 kb on - strand, within IAI47_19390 at 104.513 kb on + strand at 104.514 kb on - strand at 104.514 kb on - strand at 104.514 kb on - strand at 104.514 kb on - strand at 104.515 kb on + strand at 104.515 kb on + strand at 104.515 kb on + strand at 104.516 kb on - strand at 104.516 kb on - strand at 104.585 kb on + strand at 104.586 kb on - strand at 104.586 kb on - strand at 104.708 kb on - strand at 104.740 kb on + strand at 104.760 kb on + strand at 104.760 kb on + strand at 104.760 kb on + strand at 104.760 kb on + strand at 104.760 kb on + strand at 104.760 kb on + strand at 104.761 kb on - strand at 104.778 kb on + strand at 104.778 kb on + strand at 104.779 kb on - strand at 104.834 kb on - strand, within IAI47_19395 at 104.834 kb on - strand, within IAI47_19395 at 104.869 kb on - strand, within IAI47_19395 at 104.905 kb on + strand, within IAI47_19395 at 104.905 kb on + strand, within IAI47_19395 at 104.905 kb on + strand, within IAI47_19395 at 104.905 kb on + strand, within IAI47_19395 at 104.905 kb on + strand, within IAI47_19395 at 104.906 kb on - strand, within IAI47_19395 at 104.906 kb on - strand, within IAI47_19395 at 104.906 kb on - strand, within IAI47_19395 at 104.931 kb on + strand, within IAI47_19395 at 104.932 kb on - strand, within IAI47_19395 at 104.932 kb on - strand, within IAI47_19395 at 104.950 kb on - strand, within IAI47_19395 at 104.989 kb on + strand, within IAI47_19395 at 104.989 kb on + strand, within IAI47_19395 at 104.989 kb on + strand, within IAI47_19395 at 104.990 kb on - strand, within IAI47_19395 at 104.990 kb on - strand, within IAI47_19395 at 104.990 kb on - strand, within IAI47_19395 at 104.990 kb on - strand, within IAI47_19395 at 104.990 kb on - strand, within IAI47_19395 at 104.990 kb on - strand, within IAI47_19395 at 105.017 kb on - strand, within IAI47_19395 at 105.017 kb on - strand, within IAI47_19395 at 105.017 kb on - strand, within IAI47_19395 at 105.059 kb on + strand, within IAI47_19395 at 105.060 kb on - strand, within IAI47_19395 at 105.148 kb on + strand, within IAI47_19395 at 105.167 kb on - strand, within IAI47_19395 at 105.167 kb on - strand, within IAI47_19395 at 105.167 kb on - strand, within IAI47_19395 at 105.171 kb on + strand, within IAI47_19395 at 105.171 kb on + strand, within IAI47_19395 at 105.172 kb on - strand, within IAI47_19395 at 105.172 kb on - strand, within IAI47_19395 at 105.172 kb on - strand, within IAI47_19395 at 105.172 kb on - strand, within IAI47_19395 at 105.172 kb on - strand, within IAI47_19395 at 105.319 kb on + strand, within IAI47_19395 at 105.319 kb on + strand, within IAI47_19395 at 105.319 kb on + strand, within IAI47_19395 at 105.320 kb on - strand, within IAI47_19395 at 105.320 kb on - strand, within IAI47_19395 at 105.355 kb on + strand, within IAI47_19395 at 105.355 kb on + strand, within IAI47_19395 at 105.355 kb on + strand, within IAI47_19395 at 105.356 kb on - strand, within IAI47_19395 at 105.356 kb on - strand, within IAI47_19395 at 105.357 kb on + strand, within IAI47_19395 at 105.357 kb on + strand, within IAI47_19395 at 105.462 kb on + strand, within IAI47_19395 at 105.462 kb on + strand, within IAI47_19395 at 105.463 kb on - strand, within IAI47_19395 at 105.463 kb on - strand, within IAI47_19395 at 105.463 kb on - strand, within IAI47_19395 at 105.463 kb on - strand, within IAI47_19395
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 102,593 + -1.0 102,607 + +0.9 102,607 + +0.7 102,607 + -0.9 102,608 - +0.2 102,612 + +0.1 102,612 + +1.2 102,612 + -0.4 102,613 - -0.6 102,613 - +0.2 102,705 + +0.2 102,706 - -0.1 102,706 - -0.4 102,710 + -1.0 102,710 + -0.3 102,710 + +0.0 102,710 + -0.2 102,711 - +0.2 102,711 - +2.1 102,711 - +0.3 102,724 + +0.2 102,725 - +3.4 102,725 - -1.9 102,747 + -1.4 102,747 + -1.1 102,784 + -0.2 102,802 - +0.1 102,837 + +0.2 102,837 + -0.2 102,838 - -0.4 102,838 - +0.1 102,838 - -0.3 102,838 - +0.3 102,887 + -1.3 102,933 - -0.1 102,945 + -1.1 102,979 + +0.9 102,997 + +0.9 102,997 + +0.5 102,997 + +1.4 102,997 + +0.6 102,998 - +0.5 102,998 - +0.0 102,998 - +0.2 103,005 + +0.4 103,005 + -0.6 103,019 - +0.7 103,055 + -0.4 103,056 - +1.3 103,076 - -0.4 103,114 + +0.4 103,114 + +0.8 103,114 + -0.3 103,115 - +0.5 103,115 - +0.4 103,120 + +0.6 103,121 - -0.3 103,203 - IAI47_19385 0.17 +0.3 103,214 + IAI47_19385 0.19 +0.9 103,385 + IAI47_19385 0.56 -0.3 103,413 + IAI47_19385 0.62 -1.1 103,433 + IAI47_19385 0.66 -0.3 103,433 + IAI47_19385 0.66 -1.5 103,433 + IAI47_19385 0.66 -0.7 103,433 + IAI47_19385 0.66 +2.8 103,433 + IAI47_19385 0.66 +0.2 103,433 + IAI47_19385 0.66 -1.4 103,434 - IAI47_19385 0.66 -2.4 103,452 - IAI47_19385 0.70 +1.6 103,452 - IAI47_19385 0.70 +0.3 103,494 + IAI47_19385 0.79 -0.8 103,494 + IAI47_19385 0.79 -0.5 103,494 + IAI47_19385 0.79 +0.2 103,494 + IAI47_19385 0.79 +0.1 103,494 + IAI47_19385 0.79 +2.7 103,494 + IAI47_19385 0.79 +0.3 103,494 + IAI47_19385 0.79 -0.8 103,495 - IAI47_19385 0.80 -0.3 103,495 - IAI47_19385 0.80 +1.8 103,495 - IAI47_19385 0.80 +0.3 103,495 - IAI47_19385 0.80 -1.9 103,495 - IAI47_19385 0.80 -0.2 103,495 - IAI47_19385 0.80 +0.2 103,495 - IAI47_19385 0.80 +1.6 103,496 + IAI47_19385 0.80 +0.3 103,496 + IAI47_19385 0.80 +1.4 103,496 + IAI47_19385 0.80 -1.3 103,496 + IAI47_19385 0.80 -0.1 103,496 + IAI47_19385 0.80 +0.2 103,496 + IAI47_19385 0.80 +0.5 103,496 + IAI47_19385 0.80 -1.4 103,496 + IAI47_19385 0.80 -1.1 103,497 - IAI47_19385 0.80 -1.1 103,497 - IAI47_19385 0.80 +2.5 103,497 - IAI47_19385 0.80 +1.7 103,497 - IAI47_19385 0.80 -0.3 103,497 - IAI47_19385 0.80 -0.0 103,497 - IAI47_19385 0.80 +3.2 103,497 - IAI47_19385 0.80 +0.5 103,640 - -0.4 103,726 - IAI47_19390 0.14 +0.7 103,726 - IAI47_19390 0.14 -0.3 103,743 + IAI47_19390 0.16 +2.1 103,743 + IAI47_19390 0.16 +1.9 103,753 + IAI47_19390 0.17 +0.6 103,778 - IAI47_19390 0.19 +0.3 103,856 + IAI47_19390 0.27 -0.6 103,894 + IAI47_19390 0.31 +0.6 103,895 - IAI47_19390 0.31 -0.1 103,895 - IAI47_19390 0.31 +0.7 103,898 - IAI47_19390 0.31 -0.4 103,898 - IAI47_19390 0.31 +0.2 103,898 - IAI47_19390 0.31 +0.1 103,898 - IAI47_19390 0.31 -0.0 103,920 + IAI47_19390 0.34 -0.4 103,920 + IAI47_19390 0.34 +1.1 103,930 + IAI47_19390 0.35 +1.5 103,944 - IAI47_19390 0.36 +0.1 103,946 + IAI47_19390 0.36 +0.2 103,966 + IAI47_19390 0.38 +0.5 103,967 - IAI47_19390 0.38 +0.7 103,976 - IAI47_19390 0.39 -0.1 104,225 - IAI47_19390 0.64 +0.2 104,273 + IAI47_19390 0.69 +0.3 104,274 - IAI47_19390 0.69 -0.0 104,278 + IAI47_19390 0.70 +0.5 104,301 - IAI47_19390 0.72 +0.2 104,301 - IAI47_19390 0.72 +0.2 104,301 - IAI47_19390 0.72 +0.1 104,368 + IAI47_19390 0.79 -0.8 104,443 + IAI47_19390 0.86 +1.2 104,444 - IAI47_19390 0.86 -0.6 104,513 + +1.0 104,514 - -1.1 104,514 - +1.9 104,514 - +1.9 104,514 - +0.6 104,515 + +0.7 104,515 + -0.6 104,515 + +0.7 104,516 - -1.4 104,516 - -0.1 104,585 + +0.9 104,586 - +1.2 104,586 - -0.5 104,708 - +1.0 104,740 + +1.2 104,760 + +0.7 104,760 + -0.5 104,760 + +0.2 104,760 + +2.2 104,760 + +0.5 104,760 + +1.1 104,761 - -1.1 104,778 + -2.1 104,778 + -0.3 104,779 - +0.2 104,834 - IAI47_19395 0.11 +0.6 104,834 - IAI47_19395 0.11 -0.5 104,869 - IAI47_19395 0.13 +1.2 104,905 + IAI47_19395 0.14 -1.1 104,905 + IAI47_19395 0.14 +0.1 104,905 + IAI47_19395 0.14 -0.3 104,905 + IAI47_19395 0.14 +0.3 104,905 + IAI47_19395 0.14 -1.0 104,906 - IAI47_19395 0.14 +2.2 104,906 - IAI47_19395 0.14 -0.4 104,906 - IAI47_19395 0.14 +0.4 104,931 + IAI47_19395 0.15 -0.0 104,932 - IAI47_19395 0.15 -1.1 104,932 - IAI47_19395 0.15 -0.9 104,950 - IAI47_19395 0.16 -1.2 104,989 + IAI47_19395 0.18 +0.6 104,989 + IAI47_19395 0.18 -2.6 104,989 + IAI47_19395 0.18 +0.4 104,990 - IAI47_19395 0.18 +0.4 104,990 - IAI47_19395 0.18 -0.6 104,990 - IAI47_19395 0.18 +0.2 104,990 - IAI47_19395 0.18 -0.3 104,990 - IAI47_19395 0.18 +1.3 104,990 - IAI47_19395 0.18 +0.4 105,017 - IAI47_19395 0.19 +0.5 105,017 - IAI47_19395 0.19 -1.4 105,017 - IAI47_19395 0.19 +0.0 105,059 + IAI47_19395 0.21 -0.1 105,060 - IAI47_19395 0.21 -0.3 105,148 + IAI47_19395 0.25 +1.0 105,167 - IAI47_19395 0.26 -0.1 105,167 - IAI47_19395 0.26 -0.9 105,167 - IAI47_19395 0.26 -0.6 105,171 + IAI47_19395 0.26 +0.0 105,171 + IAI47_19395 0.26 -0.1 105,172 - IAI47_19395 0.26 +0.1 105,172 - IAI47_19395 0.26 -0.4 105,172 - IAI47_19395 0.26 +0.2 105,172 - IAI47_19395 0.26 +0.7 105,172 - IAI47_19395 0.26 -0.1 105,319 + IAI47_19395 0.32 -0.4 105,319 + IAI47_19395 0.32 +1.9 105,319 + IAI47_19395 0.32 +0.9 105,320 - IAI47_19395 0.32 +0.2 105,320 - IAI47_19395 0.32 -0.6 105,355 + IAI47_19395 0.34 -0.2 105,355 + IAI47_19395 0.34 -0.1 105,355 + IAI47_19395 0.34 -0.5 105,356 - IAI47_19395 0.34 -0.3 105,356 - IAI47_19395 0.34 +0.2 105,357 + IAI47_19395 0.34 -0.4 105,357 + IAI47_19395 0.34 +1.6 105,462 + IAI47_19395 0.38 +0.7 105,462 + IAI47_19395 0.38 +0.3 105,463 - IAI47_19395 0.38 +1.5 105,463 - IAI47_19395 0.38 -1.0 105,463 - IAI47_19395 0.38 +0.2 105,463 - IAI47_19395 0.38 -0.4
Or see this region's nucleotide sequence