Strain Fitness in Pantoea sp. MT58 around IAI47_18300

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,892,907	+		IAI47_18295	0.28	+0.9
3,892,908	-		IAI47_18295	0.29	+0.5
3,892,908	-		IAI47_18295	0.29	+0.6
3,892,995	+		IAI47_18295	0.35	-0.6
3,893,006	+		IAI47_18295	0.36	+1.1
3,893,006	+		IAI47_18295	0.36	-0.4
3,893,006	+		IAI47_18295	0.36	-0.8
3,893,006	+		IAI47_18295	0.36	+0.6
3,893,006	+		IAI47_18295	0.36	-0.3
3,893,007	-		IAI47_18295	0.36	-0.3
3,893,007	-		IAI47_18295	0.36	-0.3
3,893,007	-		IAI47_18295	0.36	-0.5
3,893,007	-		IAI47_18295	0.36	-0.2
3,893,007	-		IAI47_18295	0.36	+1.2
3,893,007	-		IAI47_18295	0.36	-0.1
3,893,016	+		IAI47_18295	0.37	-1.2
3,893,016	+		IAI47_18295	0.37	+0.9
3,893,016	+		IAI47_18295	0.37	+0.9
3,893,016	+		IAI47_18295	0.37	+0.4
3,893,017	-		IAI47_18295	0.37	-1.1
3,893,017	-		IAI47_18295	0.37	-0.5
3,893,017	-		IAI47_18295	0.37	-0.1
3,893,030	+		IAI47_18295	0.38	-0.9
3,893,030	+		IAI47_18295	0.38	-0.8
3,893,030	+		IAI47_18295	0.38	+0.1
3,893,031	-		IAI47_18295	0.38	-2.3
3,893,031	-		IAI47_18295	0.38	+1.1
3,893,053	-		IAI47_18295	0.40	+0.3
3,893,104	-		IAI47_18295	0.44	-0.2
3,893,104	-		IAI47_18295	0.44	-0.1
3,893,156	+		IAI47_18295	0.48	+0.3
3,893,156	+		IAI47_18295	0.48	-0.3
3,893,156	+		IAI47_18295	0.48	-2.4
3,893,156	+		IAI47_18295	0.48	+0.1
3,893,156	+		IAI47_18295	0.48	-0.3
3,893,157	-		IAI47_18295	0.48	-2.1
3,893,157	-		IAI47_18295	0.48	+1.2
3,893,157	-		IAI47_18295	0.48	-1.9
3,893,178	+		IAI47_18295	0.50	+0.8
3,893,178	+		IAI47_18295	0.50	-0.3
3,893,178	+		IAI47_18295	0.50	-0.3
3,893,178	+		IAI47_18295	0.50	-1.9
3,893,178	+		IAI47_18295	0.50	+0.7
3,893,179	-		IAI47_18295	0.50	+1.2
3,893,179	-		IAI47_18295	0.50	-1.0
3,893,179	-		IAI47_18295	0.50	-0.4
3,893,246	+		IAI47_18295	0.55	-0.2
3,893,246	+		IAI47_18295	0.55	+1.1
3,893,246	+		IAI47_18295	0.55	+0.0
3,893,246	+		IAI47_18295	0.55	-0.0
3,893,246	+		IAI47_18295	0.55	+0.4
3,893,246	+		IAI47_18295	0.55	+0.1
3,893,246	+		IAI47_18295	0.55	-0.2
3,893,247	-		IAI47_18295	0.55	-0.7
3,893,247	-		IAI47_18295	0.55	-1.0
3,893,247	-		IAI47_18295	0.55	-2.7
3,893,247	-		IAI47_18295	0.55	-0.3
3,893,247	-		IAI47_18295	0.55	-0.9
3,893,247	-		IAI47_18295	0.55	-0.3
3,893,247	-		IAI47_18295	0.55	-0.1
3,893,247	-		IAI47_18295	0.55	-0.2
3,893,247	-		IAI47_18295	0.55	+0.6
3,893,247	-		IAI47_18295	0.55	+0.3
3,893,271	-		IAI47_18295	0.57	-0.4
3,893,302	+		IAI47_18295	0.60	+0.5
3,893,303	-		IAI47_18295	0.60	-0.1
3,893,303	-		IAI47_18295	0.60	+1.6
3,893,315	+		IAI47_18295	0.61	-0.7
3,893,315	+		IAI47_18295	0.61	-0.7
3,893,316	-		IAI47_18295	0.61	+0.1
3,893,316	-		IAI47_18295	0.61	-0.1
3,893,316	-		IAI47_18295	0.61	+0.6
3,893,316	-		IAI47_18295	0.61	+0.7
3,893,333	+		IAI47_18295	0.62	-0.3
3,893,333	+		IAI47_18295	0.62	-0.1
3,893,333	+		IAI47_18295	0.62	-0.3
3,893,333	+		IAI47_18295	0.62	+0.2
3,893,334	-		IAI47_18295	0.62	+0.2
3,893,334	-		IAI47_18295	0.62	-1.7
3,893,462	+		IAI47_18295	0.72	+0.2
3,893,463	-		IAI47_18295	0.72	-0.7
3,893,463	-		IAI47_18295	0.72	-0.7
3,893,538	+		IAI47_18295	0.78	+0.7
3,893,538	+		IAI47_18295	0.78	-0.2
3,893,538	+		IAI47_18295	0.78	-0.7
3,893,539	-		IAI47_18295	0.78	+0.6
3,893,564	+		IAI47_18295	0.80	-0.1
3,893,564	+		IAI47_18295	0.80	-1.3
3,893,565	-		IAI47_18295	0.80	-1.1
3,893,565	-		IAI47_18295	0.80	+0.4
3,893,565	-		IAI47_18295	0.80	-0.3
3,893,585	+		IAI47_18295	0.82	-0.9
3,893,592	+		IAI47_18295	0.82	-0.7
3,893,592	+		IAI47_18295	0.82	-0.5
3,893,592	+		IAI47_18295	0.82	+0.6
3,893,592	+		IAI47_18295	0.82	+1.2
3,893,592	+		IAI47_18295	0.82	+2.7
3,893,593	-		IAI47_18295	0.83	+0.8
3,893,593	-		IAI47_18295	0.83	-1.5
3,893,593	-		IAI47_18295	0.83	+0.3
3,893,597	+		IAI47_18295	0.83	-0.5
3,893,597	+		IAI47_18295	0.83	+0.9
3,893,597	+		IAI47_18295	0.83	-0.0
3,893,597	+		IAI47_18295	0.83	+2.3
3,893,627	+		IAI47_18295	0.85	+1.8
3,893,627	+		IAI47_18295	0.85	-0.8
3,893,628	-		IAI47_18295	0.85	+0.2
3,893,628	-		IAI47_18295	0.85	+0.2
3,893,699	+				+0.0
3,893,699	+				-0.5
3,893,814	+				-0.1
3,893,815	-				-0.3
3,893,840	+				-0.1
3,893,906	-				+1.3
3,894,057	+		IAI47_18300	0.20	-1.5
3,894,057	+		IAI47_18300	0.20	-0.8
3,894,058	-		IAI47_18300	0.20	-2.3
3,894,066	-		IAI47_18300	0.21	-2.4
3,894,082	+		IAI47_18300	0.23	-2.7
3,894,082	+		IAI47_18300	0.23	-2.1
3,894,082	+		IAI47_18300	0.23	-1.2
3,894,082	+		IAI47_18300	0.23	-2.4
3,894,082	+		IAI47_18300	0.23	-0.9
3,894,082	+		IAI47_18300	0.23	-1.4
3,894,082	+		IAI47_18300	0.23	-2.1
3,894,082	+		IAI47_18300	0.23	-1.1
3,894,083	-		IAI47_18300	0.23	-2.8
3,894,083	-		IAI47_18300	0.23	-0.7
3,894,083	-		IAI47_18300	0.23	-0.9
3,894,083	-		IAI47_18300	0.23	-1.3
3,894,083	-		IAI47_18300	0.23	-0.9
3,894,083	-		IAI47_18300	0.23	-1.1
3,894,083	-		IAI47_18300	0.23	-3.7
3,894,083	-		IAI47_18300	0.23	-3.3
3,894,083	-		IAI47_18300	0.23	+1.9
3,894,086	+		IAI47_18300	0.24	-1.4
3,894,086	+		IAI47_18300	0.24	-0.7
3,894,086	+		IAI47_18300	0.24	-2.7
3,894,086	+		IAI47_18300	0.24	-1.7
3,894,086	+		IAI47_18300	0.24	-1.4
3,894,086	+		IAI47_18300	0.24	-0.7
3,894,086	+		IAI47_18300	0.24	-0.7
3,894,086	+		IAI47_18300	0.24	+0.9
3,894,086	+		IAI47_18300	0.24	-0.1
3,894,086	+		IAI47_18300	0.24	-2.3
3,894,086	+		IAI47_18300	0.24	-2.8
3,894,087	-		IAI47_18300	0.24	-1.0
3,894,087	-		IAI47_18300	0.24	-2.5
3,894,087	-		IAI47_18300	0.24	-2.1
3,894,087	-		IAI47_18300	0.24	-0.7
3,894,087	-		IAI47_18300	0.24	-2.9
3,894,087	-		IAI47_18300	0.24	-1.1
3,894,087	-		IAI47_18300	0.24	-1.7
3,894,087	-		IAI47_18300	0.24	-2.0
3,894,087	-		IAI47_18300	0.24	-1.1
3,894,087	-		IAI47_18300	0.24	-1.4
3,894,087	-		IAI47_18300	0.24	-2.8
3,894,087	-		IAI47_18300	0.24	-0.7
3,894,087	-		IAI47_18300	0.24	-1.5
3,894,087	-		IAI47_18300	0.24	-0.1
3,894,087	-		IAI47_18300	0.24	-1.1
3,894,087	-		IAI47_18300	0.24	-0.1
3,894,087	-		IAI47_18300	0.24	-2.3
3,894,090	+		IAI47_18300	0.24	-0.9
3,894,090	+		IAI47_18300	0.24	-1.3
3,894,090	+		IAI47_18300	0.24	-3.4
3,894,090	+		IAI47_18300	0.24	-1.4
3,894,090	+		IAI47_18300	0.24	-0.1
3,894,091	-		IAI47_18300	0.25	-3.1
3,894,091	-		IAI47_18300	0.25	-2.7
3,894,091	-		IAI47_18300	0.25	-0.1
3,894,091	-		IAI47_18300	0.25	-0.3
3,894,126	-		IAI47_18300	0.29	-0.9
3,894,161	-		IAI47_18300	0.34	-1.9
3,894,178	+		IAI47_18300	0.36	-1.4
3,894,179	-		IAI47_18300	0.36	-2.8
3,894,179	-		IAI47_18300	0.36	-4.0
3,894,179	-		IAI47_18300	0.36	-0.1
3,894,179	-		IAI47_18300	0.36	-2.5
3,894,257	+		IAI47_18300	0.46	-3.3
3,894,258	-		IAI47_18300	0.46	-0.7
3,894,258	-		IAI47_18300	0.46	-1.6
3,894,258	-		IAI47_18300	0.46	-2.9
3,894,258	-		IAI47_18300	0.46	-1.3
3,894,345	+		IAI47_18300	0.58	-3.3
3,894,345	+		IAI47_18300	0.58	-3.0
3,894,345	+		IAI47_18300	0.58	-2.7
3,894,345	+		IAI47_18300	0.58	-0.3
3,894,345	+		IAI47_18300	0.58	-1.4
3,894,345	+		IAI47_18300	0.58	+0.1
3,894,346	-		IAI47_18300	0.58	-2.9
3,894,362	+		IAI47_18300	0.60	-2.1
3,894,362	+		IAI47_18300	0.60	-0.1
3,894,362	+		IAI47_18300	0.60	-3.4
3,894,362	+		IAI47_18300	0.60	-2.5
3,894,362	+		IAI47_18300	0.60	-1.9
3,894,362	+		IAI47_18300	0.60	-1.7
3,894,362	+		IAI47_18300	0.60	-1.9
3,894,362	+		IAI47_18300	0.60	-0.7
3,894,363	-		IAI47_18300	0.60	-0.4
3,894,363	-		IAI47_18300	0.60	-0.9
3,894,363	-		IAI47_18300	0.60	-1.6
3,894,363	-		IAI47_18300	0.60	-1.3
3,894,363	-		IAI47_18300	0.60	-1.7
3,894,363	-		IAI47_18300	0.60	-1.7
3,894,363	-		IAI47_18300	0.60	-1.4
3,894,363	-		IAI47_18300	0.60	+1.9
3,894,363	-		IAI47_18300	0.60	-1.7
3,894,363	-		IAI47_18300	0.60	-2.5
3,894,363	-		IAI47_18300	0.60	-4.1
3,894,363	-		IAI47_18300	0.60	-3.0
3,894,363	-		IAI47_18300	0.60	-0.9
3,894,363	-		IAI47_18300	0.60	-3.2
3,894,363	-		IAI47_18300	0.60	-1.7
3,894,363	-		IAI47_18300	0.60	-1.3
3,894,363	-		IAI47_18300	0.60	-1.1
3,894,462	-		IAI47_18300	0.73	-2.3
3,894,516	-		IAI47_18300	0.80	-2.9
3,894,516	-		IAI47_18300	0.80	-1.3
3,894,681	+				-3.6
3,894,681	+				+0.2
3,894,682	-				+0.9
3,894,682	-				-1.4
3,894,704	+				-1.8
3,894,704	+				-1.5
3,894,705	-				-3.2
3,894,705	-				-1.1
3,894,705	-				-1.9
3,894,725	+				+0.3
3,894,726	-				-1.7
3,894,726	-				-1.2
3,894,789	-				+0.9
3,894,798	+				-0.4
3,894,818	+				-0.2
3,894,818	+				-0.7
3,894,819	-				+0.1
3,894,874	+				+2.9
3,894,875	-				+1.6
3,894,911	+				-0.2
3,894,911	+				-0.1
3,894,911	+				+0.5
3,894,911	+				+0.9
3,894,911	+				+0.3
3,894,911	+				+0.2
3,894,911	+				-0.3
3,894,929	+				-2.3
3,894,929	+				-0.1
3,894,929	+				+0.3
3,894,930	-				-0.3
3,894,930	-				+0.9
3,894,931	+				+0.4
3,894,931	+				+1.6
3,894,931	+				-0.1
3,894,931	+				+1.1
3,894,931	+				-0.0
3,894,931	+				-0.5
3,894,931	+				-0.3
3,894,931	+				+0.2
3,894,932	-				+0.1
3,894,932	-				+0.7
3,894,932	-				-0.1
3,894,932	-				-0.5
3,894,932	-				-3.0
3,894,932	-				+0.8
3,894,932	-				+0.1
3,894,932	-				-1.4
3,894,932	-				-0.3
3,894,935	+				-1.1
3,894,935	+				+0.1
3,894,935	+				-0.5
3,894,935	+				-0.1
3,894,935	+				-0.3
3,894,935	+				-1.7
3,894,935	+				-0.1
3,894,935	+				-0.3
3,894,935	+				+0.8
3,894,935	+				-0.1
3,894,935	+				+0.8
3,894,936	-				+1.3
3,894,936	-				+0.7
3,894,936	-				+1.1
3,894,936	-				-0.3
3,894,936	-				-0.4
3,894,936	-				+1.6
3,894,936	-				+1.2
3,894,936	-				+0.4
3,894,936	-				-1.0
3,894,968	+				+0.6
3,894,968	+				+0.6
3,894,968	+				+0.1
3,894,969	-				+2.1
3,894,969	-				-0.1
3,894,969	-				-0.4
3,894,984	+				-0.7
3,894,984	+				+0.1
3,894,984	+				-0.7
3,894,984	+				+0.7
3,894,984	+				-0.5
3,894,984	+				-0.1
3,894,984	+				-0.5
3,894,985	-				-0.1
3,894,985	-				-1.4
3,894,985	-				+0.4
3,894,985	-				-0.7
3,894,985	-				-0.5
3,894,985	-				-0.1
3,894,985	-				+0.9
3,894,987	+				-0.2
3,894,987	+				+0.9
3,894,987	+				+0.6
3,894,987	+				-0.6
3,894,987	+				+0.9
3,894,988	-				+0.5
3,894,988	-				-1.2
3,895,213	-		IAI47_18305	0.29	+1.9
3,895,240	+		IAI47_18305	0.32	-0.9
3,895,240	+		IAI47_18305	0.32	-1.0
3,895,264	+		IAI47_18305	0.35	-0.1
3,895,264	+		IAI47_18305	0.35	-1.9
3,895,265	-		IAI47_18305	0.35	-0.9
3,895,265	-		IAI47_18305	0.35	+1.5
3,895,265	-		IAI47_18305	0.35	+0.1
3,895,291	+		IAI47_18305	0.38	+0.7
3,895,291	+		IAI47_18305	0.38	-0.1
3,895,291	+		IAI47_18305	0.38	-0.3
3,895,291	+		IAI47_18305	0.38	-0.7
3,895,292	-		IAI47_18305	0.39	+0.5
3,895,292	-		IAI47_18305	0.39	-0.3
3,895,292	-		IAI47_18305	0.39	-1.7
3,895,310	+		IAI47_18305	0.41	-0.4
3,895,311	-		IAI47_18305	0.41	+0.2
3,895,329	+		IAI47_18305	0.43	+0.9
3,895,329	+		IAI47_18305	0.43	-1.0
3,895,330	-		IAI47_18305	0.43	+0.8
3,895,401	+		IAI47_18305	0.52	+0.7
3,895,467	+		IAI47_18305	0.60	+0.3
3,895,545	+		IAI47_18305	0.69	+1.1
3,895,545	+		IAI47_18305	0.69	+0.3
3,895,545	+		IAI47_18305	0.69	-0.2
3,895,545	+		IAI47_18305	0.69	+0.4
3,895,545	+		IAI47_18305	0.69	+0.9
3,895,545	+		IAI47_18305	0.69	+0.8
3,895,545	+		IAI47_18305	0.69	-2.1
3,895,545	+		IAI47_18305	0.69	-0.3
3,895,545	+		IAI47_18305	0.69	+0.3
3,895,546	-		IAI47_18305	0.69	-0.7
3,895,546	-		IAI47_18305	0.69	-1.4
3,895,546	-		IAI47_18305	0.69	+0.9
3,895,546	-		IAI47_18305	0.69	+0.4
3,895,546	-		IAI47_18305	0.69	+0.3
3,895,546	-		IAI47_18305	0.69	+0.4
3,895,546	-		IAI47_18305	0.69	+0.3
3,895,546	-		IAI47_18305	0.69	+0.2
3,895,546	-		IAI47_18305	0.69	+1.7
3,895,551	+		IAI47_18305	0.70	+0.1
3,895,551	+		IAI47_18305	0.70	+1.9
3,895,551	+		IAI47_18305	0.70	-0.4
3,895,551	+		IAI47_18305	0.70	-0.4
3,895,551	+		IAI47_18305	0.70	+1.3
3,895,552	-		IAI47_18305	0.70	+0.0
3,895,552	-		IAI47_18305	0.70	+0.4
3,895,581	-		IAI47_18305	0.73	-0.7
3,895,581	-		IAI47_18305	0.73	+0.7
3,895,588	+		IAI47_18305	0.74	-1.1
3,895,588	+		IAI47_18305	0.74	-0.1
3,895,588	+		IAI47_18305	0.74	-0.3
3,895,589	-		IAI47_18305	0.74	-0.7
3,895,589	-		IAI47_18305	0.74	+1.7
3,895,589	-		IAI47_18305	0.74	+1.9
3,895,589	-		IAI47_18305	0.74	-0.6
3,895,589	-		IAI47_18305	0.74	+0.9
3,895,589	-		IAI47_18305	0.74	-0.3
3,895,589	-		IAI47_18305	0.74	-0.2
3,895,589	-		IAI47_18305	0.74	+0.9