Strain Fitness in Pantoea sp. MT58 around IAI47_16360

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,468,421	+				-0.1
3,468,421	+				-1.7
3,468,421	+				+1.2
3,468,421	+				+0.8
3,468,421	+				+0.3
3,468,422	-				+0.5
3,468,436	+				+0.4
3,468,437	-				+1.9
3,468,437	-				-0.5
3,468,443	+				-0.3
3,468,443	+				-1.3
3,468,443	+				+0.9
3,468,466	+				-0.5
3,468,467	-				-0.1
3,468,587	+		IAI47_16355	0.23	+1.0
3,468,587	+		IAI47_16355	0.23	-0.3
3,468,587	+		IAI47_16355	0.23	-0.3
3,468,587	+		IAI47_16355	0.23	+0.5
3,468,587	+		IAI47_16355	0.23	+0.6
3,468,587	+		IAI47_16355	0.23	+0.9
3,468,587	+		IAI47_16355	0.23	-1.3
3,468,587	+		IAI47_16355	0.23	-0.5
3,468,587	+		IAI47_16355	0.23	-0.1
3,468,587	+		IAI47_16355	0.23	-0.3
3,468,587	+		IAI47_16355	0.23	-1.7
3,468,587	+		IAI47_16355	0.23	-0.5
3,468,587	+		IAI47_16355	0.23	+0.3
3,468,587	+		IAI47_16355	0.23	+0.7
3,468,587	+		IAI47_16355	0.23	-0.3
3,468,587	+		IAI47_16355	0.23	-1.3
3,468,587	+		IAI47_16355	0.23	+1.6
3,468,588	-		IAI47_16355	0.23	+0.6
3,468,588	-		IAI47_16355	0.23	+1.5
3,468,588	-		IAI47_16355	0.23	+1.0
3,468,588	-		IAI47_16355	0.23	-0.5
3,468,588	-		IAI47_16355	0.23	-0.1
3,468,588	-		IAI47_16355	0.23	-0.3
3,468,588	-		IAI47_16355	0.23	+0.2
3,468,588	-		IAI47_16355	0.23	-0.3
3,468,611	+		IAI47_16355	0.27	-0.1
3,468,617	+		IAI47_16355	0.27	-1.7
3,468,617	+		IAI47_16355	0.27	+0.3
3,468,618	-		IAI47_16355	0.28	+0.4
3,468,658	+		IAI47_16355	0.34	+0.6
3,468,658	+		IAI47_16355	0.34	+0.7
3,468,658	+		IAI47_16355	0.34	+0.1
3,468,658	+		IAI47_16355	0.34	-1.1
3,468,659	-		IAI47_16355	0.34	+1.2
3,468,659	-		IAI47_16355	0.34	+0.2
3,468,659	-		IAI47_16355	0.34	+0.1
3,468,671	+		IAI47_16355	0.36	+0.7
3,468,687	-		IAI47_16355	0.38	-0.1
3,468,696	-		IAI47_16355	0.40	-1.0
3,468,696	-		IAI47_16355	0.40	-0.0
3,468,696	-		IAI47_16355	0.40	-0.4
3,468,714	+		IAI47_16355	0.42	-0.7
3,468,714	+		IAI47_16355	0.42	-0.5
3,468,714	+		IAI47_16355	0.42	+0.1
3,468,715	-		IAI47_16355	0.43	-0.7
3,468,715	-		IAI47_16355	0.43	-0.5
3,468,755	+		IAI47_16355	0.49	+1.2
3,468,755	+		IAI47_16355	0.49	-1.0
3,468,756	-		IAI47_16355	0.49	+0.2
3,468,759	-		IAI47_16355	0.49	+4.5
3,468,759	-		IAI47_16355	0.49	+0.1
3,468,804	+		IAI47_16355	0.56	+0.5
3,468,805	-		IAI47_16355	0.56	-0.3
3,468,805	-		IAI47_16355	0.56	+0.2
3,468,879	-		IAI47_16355	0.68	+0.3
3,468,914	+		IAI47_16355	0.73	+1.0
3,468,926	+		IAI47_16355	0.75	+0.3
3,468,926	+		IAI47_16355	0.75	+0.1
3,468,926	+		IAI47_16355	0.75	-1.2
3,468,926	+		IAI47_16355	0.75	-0.7
3,468,926	+		IAI47_16355	0.75	+0.0
3,468,927	-		IAI47_16355	0.75	-1.1
3,468,927	-		IAI47_16355	0.75	+0.6
3,468,927	-		IAI47_16355	0.75	-0.1
3,468,968	+		IAI47_16355	0.81	-0.1
3,468,968	+		IAI47_16355	0.81	-2.1
3,468,968	+		IAI47_16355	0.81	+0.1
3,468,968	+		IAI47_16355	0.81	+2.2
3,468,969	-		IAI47_16355	0.82	-0.1
3,468,969	-		IAI47_16355	0.82	-0.5
3,468,969	-		IAI47_16355	0.82	-0.5
3,469,086	+				-2.5
3,469,086	+				-0.1
3,469,105	-				+1.0
3,469,110	+				-0.5
3,469,111	-				-0.4
3,469,218	+				-0.8
3,469,218	+				-1.0
3,469,219	-				-0.3
3,469,295	+				+1.8
3,469,296	-				-0.8
3,469,296	-				+1.1
3,469,296	-				+0.8
3,469,303	+				+0.5
3,469,304	-				+2.5
3,469,304	-				+0.6
3,469,371	+				-0.2
3,469,371	+				-1.2
3,469,371	+				-0.4
3,469,371	+				+0.4
3,469,371	+				-2.1
3,469,372	-				-0.1
3,469,372	-				+0.1
3,469,372	-				-0.1
3,469,372	-				-0.3
3,469,372	-				+1.9
3,469,372	-				+0.1
3,469,374	+				-1.0
3,469,375	-				+0.2
3,469,468	+				-2.4
3,469,468	+				-1.0
3,469,468	+				+1.5
3,469,468	+				-1.0
3,469,468	+				+0.1
3,469,468	+				-1.4
3,469,468	+				+0.3
3,469,468	+				+0.2
3,469,468	+				-0.5
3,469,468	+				-1.1
3,469,469	-				+1.3
3,469,469	-				-1.0
3,469,469	-				+0.9
3,469,469	-				-0.7
3,469,469	-				+0.5
3,469,469	-				+1.6
3,469,469	-				-1.4
3,469,469	-				-0.9
3,469,540	+		IAI47_16360	0.19	+1.7
3,469,540	+		IAI47_16360	0.19	+1.1
3,469,540	+		IAI47_16360	0.19	+0.3
3,469,541	-		IAI47_16360	0.19	+0.3
3,469,541	-		IAI47_16360	0.19	+1.4
3,469,677	+		IAI47_16360	0.39	+0.4
3,469,677	+		IAI47_16360	0.39	-1.0
3,469,677	+		IAI47_16360	0.39	+1.0
3,469,678	-		IAI47_16360	0.40	-0.9
3,469,678	-		IAI47_16360	0.40	+0.6
3,469,678	-		IAI47_16360	0.40	-1.8
3,469,678	-		IAI47_16360	0.40	-0.7
3,469,751	+		IAI47_16360	0.50	+0.2
3,469,751	+		IAI47_16360	0.50	+1.3
3,469,751	+		IAI47_16360	0.50	+0.9
3,469,752	-		IAI47_16360	0.50	-0.4
3,469,752	-		IAI47_16360	0.50	-0.7
3,469,752	-		IAI47_16360	0.50	-1.1
3,469,902	-		IAI47_16360	0.72	+0.0
3,469,926	+		IAI47_16360	0.76	-0.4
3,469,959	+		IAI47_16360	0.81	+0.2
3,469,968	+		IAI47_16360	0.82	+1.4
3,469,969	-		IAI47_16360	0.82	+0.2
3,469,995	+		IAI47_16360	0.86	-1.1
3,469,995	+		IAI47_16360	0.86	-1.1
3,470,025	+				+1.7
3,470,026	-				-0.6
3,470,026	-				-0.5
3,470,026	-				-0.1
3,470,026	-				-0.2
3,470,026	-				+0.3
3,470,047	+				-0.1
3,470,080	+				+0.2
3,470,080	+				+0.0
3,470,080	+				-0.2
3,470,080	+				+0.6
3,470,080	+				-0.3
3,470,080	+				-0.1
3,470,081	-				-0.9
3,470,081	-				-0.5
3,470,090	+				-0.3
3,470,090	+				-0.5
3,470,090	+				-1.4
3,470,091	-				+0.7
3,470,091	-				-0.2
3,470,100	+				+0.6
3,470,101	-				-1.4
3,470,109	+				+0.0
3,470,160	+		IAI47_16365	0.12	-1.2
3,470,161	-		IAI47_16365	0.12	-0.6
3,470,161	-		IAI47_16365	0.12	+0.4
3,470,161	-		IAI47_16365	0.12	+0.9
3,470,161	-		IAI47_16365	0.12	-0.6
3,470,163	+		IAI47_16365	0.12	-0.3
3,470,163	+		IAI47_16365	0.12	-1.4
3,470,163	+		IAI47_16365	0.12	+0.9
3,470,163	+		IAI47_16365	0.12	+0.5
3,470,163	+		IAI47_16365	0.12	-0.3
3,470,163	+		IAI47_16365	0.12	-0.2
3,470,163	+		IAI47_16365	0.12	-1.7
3,470,163	+		IAI47_16365	0.12	-0.8
3,470,163	+		IAI47_16365	0.12	+0.7
3,470,163	+		IAI47_16365	0.12	-0.4
3,470,163	+		IAI47_16365	0.12	-0.9
3,470,163	+		IAI47_16365	0.12	-0.1
3,470,163	+		IAI47_16365	0.12	-1.2
3,470,163	+		IAI47_16365	0.12	+2.5
3,470,163	+		IAI47_16365	0.12	-0.1
3,470,163	+		IAI47_16365	0.12	-1.4
3,470,164	-		IAI47_16365	0.13	-2.1
3,470,164	-		IAI47_16365	0.13	-0.5
3,470,164	-		IAI47_16365	0.13	-0.9
3,470,164	-		IAI47_16365	0.13	+1.3
3,470,164	-		IAI47_16365	0.13	-0.1
3,470,164	-		IAI47_16365	0.13	-0.3
3,470,164	-		IAI47_16365	0.13	-0.1
3,470,164	-		IAI47_16365	0.13	-0.4
3,470,164	-		IAI47_16365	0.13	-0.3
3,470,205	+		IAI47_16365	0.22	+1.3
3,470,205	+		IAI47_16365	0.22	+0.7
3,470,205	+		IAI47_16365	0.22	-1.1
3,470,206	-		IAI47_16365	0.22	+1.1
3,470,347	+		IAI47_16365	0.54	-0.2
3,470,380	+		IAI47_16365	0.62	-0.3
3,470,380	+		IAI47_16365	0.62	-0.5
3,470,381	-		IAI47_16365	0.62	-1.4
3,470,381	-		IAI47_16365	0.62	+0.4
3,470,381	-		IAI47_16365	0.62	-1.1
3,470,420	+		IAI47_16365	0.71	-0.1
3,470,420	+		IAI47_16365	0.71	-1.4
3,470,420	+		IAI47_16365	0.71	+1.9
3,470,421	-		IAI47_16365	0.71	-0.3
3,470,421	-		IAI47_16365	0.71	-0.1
3,470,421	-		IAI47_16365	0.71	-0.7
3,470,425	+		IAI47_16365	0.72	+0.2
3,470,425	+		IAI47_16365	0.72	-1.1
3,470,429	-		IAI47_16365	0.73	+2.5
3,470,531	+				+1.3
3,470,531	+				+0.9
3,470,532	-				+0.5
3,470,532	-				-0.7
3,470,532	-				-0.3
3,470,532	-				-0.8
3,470,552	+				+0.9
3,470,552	+				+1.7
3,470,552	+				+1.2
3,470,552	+				+0.9
3,470,553	-				-2.7
3,470,553	-				+1.5
3,470,553	-				+0.2
3,470,553	-				+0.1
3,470,937	-				+0.5
3,470,937	-				-0.7
3,470,965	-				-0.5
3,470,965	-				+0.9
3,470,965	-				-0.0
3,470,965	-				+0.4
3,470,965	-				-1.0
3,470,965	-				+1.4
3,470,969	+				-0.1
3,470,970	-				+1.0
3,470,970	-				+1.7
3,470,970	-				-0.6
3,470,970	-				-0.1
3,471,003	+				-2.7
3,471,003	+				+0.7
3,471,003	+				-1.7
3,471,003	+				-1.7
3,471,004	-				-0.6
3,471,004	-				+0.2
3,471,004	-				-0.4
3,471,004	-				-0.1
3,471,004	-				-1.0
3,471,004	-				-0.1
3,471,004	-				-0.7
3,471,004	-				-0.1
3,471,004	-				+1.5
3,471,005	+				+0.9
3,471,005	+				+0.3
3,471,005	+				-0.5
3,471,005	+				+1.5
3,471,005	+				-1.0
3,471,005	+				+0.0
3,471,005	+				-0.0
3,471,006	-				-0.4
3,471,006	-				-0.2
3,471,006	-				-1.2
3,471,006	-				-0.0
3,471,023	+				+0.7
3,471,023	+				+0.9
3,471,023	+				+0.6
3,471,023	+				+0.6
3,471,034	+				-0.7
3,471,034	+				+1.0
3,471,034	+				+0.1
3,471,034	+				+0.6
3,471,034	+				-0.4
3,471,034	+				-0.1
3,471,034	+				-0.7
3,471,034	+				-1.4
3,471,034	+				-1.8
3,471,034	+				-0.9
3,471,034	+				-1.3
3,471,034	+				+2.5
3,471,034	+				+1.9
3,471,035	-				+0.9
3,471,035	-				-0.5
3,471,035	-				+0.2
3,471,048	+				-2.0
3,471,049	-				+0.9