Strain Fitness in Pantoea sp. MT58 around IAI47_15650

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,300,286	+		IAI47_15645	0.33	-1.9
3,300,289	+		IAI47_15645	0.33	-0.7
3,300,301	+		IAI47_15645	0.34	-3.5
3,300,347	+		IAI47_15645	0.37	-1.1
3,300,347	+		IAI47_15645	0.37	-1.7
3,300,347	+		IAI47_15645	0.37	-3.1
3,300,347	+		IAI47_15645	0.37	-1.9
3,300,347	+		IAI47_15645	0.37	-0.7
3,300,347	+		IAI47_15645	0.37	-0.1
3,300,350	+		IAI47_15645	0.37	-2.1
3,300,350	+		IAI47_15645	0.37	-1.7
3,300,350	+		IAI47_15645	0.37	-0.7
3,300,350	+		IAI47_15645	0.37	-1.7
3,300,380	+		IAI47_15645	0.39	-1.1
3,300,380	+		IAI47_15645	0.39	-0.7
3,300,380	+		IAI47_15645	0.39	+1.5
3,300,502	+		IAI47_15645	0.48	-2.6
3,300,502	+		IAI47_15645	0.48	-0.1
3,300,508	+		IAI47_15645	0.48	-2.1
3,300,508	+		IAI47_15645	0.48	+0.3
3,300,508	+		IAI47_15645	0.48	-3.5
3,300,508	+		IAI47_15645	0.48	-1.1
3,300,508	+		IAI47_15645	0.48	+0.9
3,300,555	+		IAI47_15645	0.52	+0.1
3,300,555	+		IAI47_15645	0.52	-0.7
3,300,620	+		IAI47_15645	0.56	-0.7
3,300,629	+		IAI47_15645	0.57	-1.1
3,300,629	+		IAI47_15645	0.57	-0.7
3,300,629	+		IAI47_15645	0.57	-0.7
3,300,635	-		IAI47_15645	0.57	-0.1
3,300,647	+		IAI47_15645	0.58	-3.0
3,300,647	+		IAI47_15645	0.58	-1.5
3,300,769	+		IAI47_15645	0.66	-1.5
3,300,769	+		IAI47_15645	0.66	-2.3
3,300,863	+		IAI47_15645	0.73	-2.7
3,300,895	+		IAI47_15645	0.75	-2.3
3,300,937	+		IAI47_15645	0.78	-1.7
3,300,937	+		IAI47_15645	0.78	-2.6
3,300,937	+		IAI47_15645	0.78	-1.9
3,300,940	+		IAI47_15645	0.78	-3.0
3,300,940	+		IAI47_15645	0.78	-2.6
3,300,949	+		IAI47_15645	0.79	-0.7
3,300,975	+		IAI47_15645	0.81	-1.1
3,300,975	+		IAI47_15645	0.81	-3.8
3,300,975	+		IAI47_15645	0.81	+0.9
3,300,975	+		IAI47_15645	0.81	-2.3
3,300,975	+		IAI47_15645	0.81	-2.1
3,301,043	+		IAI47_15645	0.85	-1.1
3,301,043	+		IAI47_15645	0.85	-1.7
3,301,043	+		IAI47_15645	0.85	-0.1
3,301,078	+		IAI47_15645	0.88	+0.4
3,301,078	+		IAI47_15645	0.88	-1.5
3,301,078	+		IAI47_15645	0.88	-0.2
3,301,159	+				+0.9
3,301,189	+				-1.7
3,301,189	+				-0.7
3,301,773	+				+0.2
3,301,781	-				-0.7
3,301,781	-				+0.4
3,301,890	+				-0.7
3,301,890	+				-1.3
3,301,928	+		IAI47_15655	0.14	-0.6
3,301,928	+		IAI47_15655	0.14	-1.5
3,301,928	+		IAI47_15655	0.14	-0.9
3,301,928	+		IAI47_15655	0.14	+0.7
3,301,929	-		IAI47_15655	0.14	-1.9
3,301,929	-		IAI47_15655	0.14	+0.6
3,301,929	-		IAI47_15655	0.14	-0.0
3,301,929	-		IAI47_15655	0.14	-1.2
3,302,016	+		IAI47_15655	0.25	+0.9
3,302,016	+		IAI47_15655	0.25	+0.3
3,302,016	+		IAI47_15655	0.25	+0.7
3,302,017	-		IAI47_15655	0.25	+0.6
3,302,017	-		IAI47_15655	0.25	-0.7
3,302,033	-		IAI47_15655	0.27	-0.2
3,302,078	+		IAI47_15655	0.33	+0.6
3,302,078	+		IAI47_15655	0.33	-0.3
3,302,078	+		IAI47_15655	0.33	+0.2
3,302,078	+		IAI47_15655	0.33	-1.0
3,302,078	+		IAI47_15655	0.33	-0.3
3,302,078	+		IAI47_15655	0.33	-0.0
3,302,078	+		IAI47_15655	0.33	-0.1
3,302,078	+		IAI47_15655	0.33	+1.0
3,302,079	-		IAI47_15655	0.33	+0.5
3,302,079	-		IAI47_15655	0.33	-0.1
3,302,085	+		IAI47_15655	0.34	-0.5
3,302,085	+		IAI47_15655	0.34	-0.5
3,302,085	+		IAI47_15655	0.34	+0.7
3,302,085	+		IAI47_15655	0.34	-1.1
3,302,085	+		IAI47_15655	0.34	-0.6
3,302,085	+		IAI47_15655	0.34	+0.4
3,302,085	+		IAI47_15655	0.34	-0.5
3,302,086	-		IAI47_15655	0.34	-0.7
3,302,086	-		IAI47_15655	0.34	+0.2
3,302,086	-		IAI47_15655	0.34	-1.3
3,302,086	-		IAI47_15655	0.34	-2.7
3,302,144	+		IAI47_15655	0.41	+0.9
3,302,145	-		IAI47_15655	0.41	+0.9
3,302,145	-		IAI47_15655	0.41	-0.0
3,302,145	-		IAI47_15655	0.41	-2.6
3,302,253	-		IAI47_15655	0.55	-0.5
3,302,265	+		IAI47_15655	0.56	+0.6
3,302,267	+		IAI47_15655	0.56	-0.6
3,302,267	+		IAI47_15655	0.56	+1.9
3,302,267	+		IAI47_15655	0.56	+0.1
3,302,268	-		IAI47_15655	0.57	-0.0
3,302,268	-		IAI47_15655	0.57	-0.7
3,302,268	-		IAI47_15655	0.57	-0.1
3,302,272	+		IAI47_15655	0.57	-0.1
3,302,273	-		IAI47_15655	0.57	-0.5
3,302,273	-		IAI47_15655	0.57	-1.1
3,302,353	+		IAI47_15655	0.67	+0.1
3,302,353	+		IAI47_15655	0.67	-0.5
3,302,354	-		IAI47_15655	0.67	+0.9
3,302,391	-		IAI47_15655	0.72	+1.1
3,302,407	+		IAI47_15655	0.74	+1.2
3,302,556	+				+0.4
3,302,556	+				+4.0
3,302,556	+				+0.2
3,302,556	+				-0.1
3,302,557	-				-0.8
3,302,557	-				+0.5
3,302,557	-				+0.9
3,302,557	-				+0.5
3,302,557	-				-0.1
3,302,557	-				-0.7
3,302,557	-				-0.7
3,302,557	-				-0.1
3,302,557	-				-1.9
3,302,559	-				+0.1
3,302,579	+				-0.5
3,302,579	+				+0.3
3,302,580	-				-0.6
3,302,580	-				-2.5